ViewGene
Locus Name:
GeneID:
Location:

GeneID:588
TrivialName: PA14_72940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72940
PAO1 Ortholog Locus:PA5529
Sequence Length:1758
Protein Length:585
Start: 6494339
Stop: 6496096
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08914.1|AE004965_6 (AE004965) probable sodium/proton antiporter [Pseudomonas aeruginosa PAO1]
Identities = 583/585 (99%), Positives = 584/585 (99%)
Sequence:
ATGCATGCCGTCGATTTCATCCAGGACCTCGCCGTGATCATGCTGGTGGCCGGCGTGGTCACCATTCTCTTC
CACCGCCTGCGCCAACCGGTGGTCCTCGGCTACATCGTCGCCGGCTTCATCATCGGCCCGCACACCCCGCCC
TTCGGGCTGATCCACGACGAAGACACGATCAAGACCCTGGCCGAACTCGGGGTGATCTTCCTGATGTTCTGC
CTCGGCCTGGAATTCAGCCTGCGCAAGCTCTTCCAGGTCGGCGCCACGGCGTTCATCGCGGCGTTCCTGGAA
ATCGTCCTGATGATCTGGATCGGCTTCGAGATCGGTCGCTTCTTCGAGTGGAGCACCATGGACTCGCTGTTC
CTCGGCGCGATCCTGGCGATCTCCTCCACCACCATCATCGTCAAGGCGCTCGGCGACCTGAAGATGAAGAAC
GAGCGCTTCGCCCAACTGATCTTCGGCGTGCTGATCGTCGAGGACATCCTCGGCATCGGCATCATCGCCCTG
CTGTCGGGAATCGCCGTGAGCGGTTCGGTGGAAACCGGCGAGGTGTTCTCCACGGTCGGCAAGCTCAGCCTG
TTCATGATCGTCGCGCTGGTCGTCGGCATCCTCCTGGTGCCGCGCCTGCTGGCCTACGTGGCGAAGTTCGAG
AGCAACGAGATGCTGCTGGTCACCGTGCTCGGCCTGTGCTTCGGCTTCTGCCTGCTGGTGGTGAAGCTGGAG
TACAGCATGGTGCTCGGCGCCTTCCTGATCGGCGCGATCATGGCCGAGTCGCGCCAGTTGGTGCAGATCGAA
CGGCTGATCGAGCCGGTCCGTGACATGTTCAGTGCGATCTTCTTCGTCGCCATCGGCCTGCTGATCGATCCG
AAGATCCTCGTCGAGTACGCCTGGCCGATCGCCCTGATCACCGTCGCGGTGGTGCTCGGCAAGATGTTTTCC
TGCGGCATGGGCGCGTTCATCGCCGGCAACGATGGACGCACCTCGCTGCGGGTCGGCATGGGCCTGTCGCAG
ATCGGCGAGTTCTCCTTCATCATCGCCGCCCTGGGCATGACCCTGAAAGTCACCAGTGACTTCCTCTACCCG
GTGGCGGTAGCGGTCTCGGCCATCACCACCCTGCTCACCCCGTACCTGATCCGCGCCGCCGATCCGCTCTCG
CAGCACCTGGCCAACGCCATGCCGCAGCGCATGGCGAGGATCTTCGGCCACTACGGCGACTGGCTGCGCAGC
ATCCAGCCGCAGGGCGACCGTGCGGTGCTGGCGGCGATGATCCGGCGCATCCTGCTGCAAGTCGGGGTGAAC
CTGGCGCTGGTGATCGCGATCTTCCTCGCCGGCGGTTATTTCGCCGATACGCTTTCCGCCTGGATGAGCCAG
TGGGTCGCCTACGATGGACTGCACAAGGCATTGATCTGGGGCGGCGCGCTGCTGGTCTCGCTGGCCTTCCTG
ATCGCCGCGTACCGCAAGCTCAAGGCTCTGTCGATGCTGCTGGCCGAACTCGGGGTCAAGCCGGAGAAAGCC
GGACGCCATACGGCGCGGGTACGTCGGGTGATCTCCGAGATCATCCCGCTGCTGTCGCTGGCCGGCATGATG
GTGCTGCTGGCTGCGCTCAGCTCGAGCATCCTGCCGCCGGGCGAGTTGCTGATCGTGGTGGCGCTGGTCGCC
GGCCTGGTGATCGCAGTGCTCTGGCGCTGGCTGATCCGCGTGCATTCGCGGATGCAGATCGCCCTGATGGAA
ACCCTCGACCAGGAAAAGGGCAGCCACTGA
Translation:
MHAVDFIQDLAVIMLVAGVVTILFHRLRQPVVLGYIVAGFIIGPHTPPFGLIHDEDTIKTLAELGVIFLMFC
LGLEFSLRKLFQVGATAFIAAFLEIVLMIWIGFEIGRFFEWSTMDSLFLGAILAISSTTIIVKALGDLKMKN
ERFAQLIFGVLIVEDILGIGIIALLSGIAVSGSVETGEVFSTVGKLSLFMIVALVVGILLVPRLLAYVAKFE
SNEMLLVTVLGLCFGFCLLVVKLEYSMVLGAFLIGAIMAESRQLVQIERLIEPVRDMFSAIFFVAIGLLIDP
KILVEYAWPIALITVAVVLGKMFSCGMGAFIAGNDGRTSLRVGMGLSQIGEFSFIIAALGMTLKVTSDFLYP
VAVAVSAITTLLTPYLIRAADPLSQHLANAMPQRMARIFGHYGDWLRSIQPQGDRAVLAAMIRRILLQVGVN
LALVIAIFLAGGYFADTLSAWMSQWVAYDGLHKALIWGGALLVSLAFLIAAYRKLKALSMLLAELGVKPEKA
GRHTARVRRVISEIIPLLSLAGMMVLLAALSSSILPPGELLIVVALVAGLVIAVLWRWLIRVHSRMQIALME
TLDQEKGSH*
AnnotationID:597GeneID:588
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 10:10:33
Gene Name:
Confidence Code:3
GeneProduct:putative sodium/proton antiporter
Cell Localization:()
Synonyms:PA5529
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0475,COG465
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70920.1|AE016736_3 (AE016794) sodium/proton antiporter, putative [Pseudomonas putida
           KT2440]
          Length = 586

 Score =  964 bits (2491), Expect = 0.0
 Identities = 493/582 (84%), Positives = 545/582 (93%)

>gb|AAO58938.1| (AE016876) sodium/hydrogen exchanger family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 587

 Score =  950 bits (2456), Expect = 0.0
 Identities = 496/587 (84%), Positives = 539/587 (91%), Gaps = 2/587 (0%)

>gb|AAO79690.1| (AE016945) putative Na+/H+ anitporter [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 757

 Score =  380 bits (976), Expect = e-104
 Identities = 221/562 (39%), Positives = 338/562 (60%), Gaps = 37/562 (6%)






 
Structural Features:
COG0475, KefB, Kef-type K+ transport systems, membrane components 
[Inorganic ion transport and metabolism]
CD-Length = 397 residues,  99.7% aligned
Score =  196 bits (499), Expect = 8e-51
Identities = 134/398 (33%), Positives = 218/398 (54%), Gaps = 6/398 (1%)

COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component 
[Inorganic ion transport and metabolism]
CD-Length = 408 residues,  97.8% aligned
Score =  182 bits (463), Expect = 1e-46
Identities = 125/401 (31%), Positives = 207/401 (51%), Gaps = 10/401 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1179




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18321




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33313




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:588_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:588
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1008
                           PA5529_tr
                           translation of PA5529
                           585
                           99.65
                           99.82
                           0
                           2876.0
     

     
     
39584
                           gb|AAG08914.1|AE004965_6
                           (AE004965) probable sodium/proton antiporter [Pseudomonas aeruginosa PAO1]
                           585
                           99.65
                           99.82
                           0
                           2876.0
     

     
     
39586
                           gb|AAO58938.1|
                           (AE016876) sodium/hydrogen exchanger family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           587
                           84.49
                           91.82
                           2
                           2458.0
     

     
     
39585
                           gb|AAN70920.1|AE016736_3
                           (AE016794) sodium/proton antiporter, putative [Pseudomonas putida KT2440]
                           586
                           84.47
                           93.34
                           1
                           2493.0
     

     






      

          
GC ORFID: 43590How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5529Glimmer Score: 

          
Start: 5758028Stop: 5759785

          
Length: 1758


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5529 translation of PA5529Homolog Bit Score 1112.0

          
Other Homologs:  t_PA5529 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATGCCGTCGATTTCATCCAGGACCTCGCCGTGATCATGCTGGTGGCCGGCGTGGTCACCATTCTCTTC 
CACCGCCTGCGCCAACCGGTGGTCCTCGGCTACATCGTCGCCGGCTTCATCATCGGCCCGCACACCCCGCCC 
TTCGGGCTGATCCACGACGAAGACACGATCAAGACCCTGGCCGAACTCGGGGTGATCTTCCTGATGTTCTGC 
CTCGGCCTGGAATTCAGCCTGCGCAAGCTCTTCCAGGTCGGCGCCACGGCGTTCATCGCGGCGTTCCTGGAA 
ATCGTCCTGATGATCTGGATCGGCTTCGAGATCGGTCGCTTCTTCGAGTGGAGCACCATGGACTCGCTGTTC 
CTCGGCGCGATCCTGGCGATCTCCTCCACCACCATCATCGTCAAGGCGCTCGGCGACCTGAAGATGAAGAAC 
GAGCGCTTCGCCCAACTGATCTTCGGCGTGCTGATCGTCGAGGACATCCTCGGCATCGGCATCATCGCCCTG 
CTGTCGGGAATCGCCGTGAGCGGTTCGGTGGAAACCGGCGAGGTGTTCTCCACGGTCGGCAAGCTCAGCCTG 
TTCATGATCGTCGCGCTGGTCGTCGGCATCCTCCTGGTGCCGCGCCTGCTGGCCTACGTGGCGAAGTTCGAG 
AGCAACGAGATGCTGCTGGTCACCGTGCTCGGCCTGTGCTTCGGCTTCTGCCTGCTGGTGGTGAAGCTGGAG 
TACAGCATGGTGCTCGGCGCCTTCCTGATCGGCGCGATCATGGCCGAGTCGCGCCAGTTGGTGCAGATCGAA 
CGGCTGATCGAGCCGGTCCGTGACATGTTCAGTGCGATCTTCTTCGTCGCCATCGGCCTGCTGATCGATCCG 
AAGATCCTCGTCGAGTACGCCTGGCCGATCGCCCTGATCACCGTCGCGGTGGTGCTCGGCAAGATGTTTTCC 
TGCGGCATGGGCGCGTTCATCGCCGGCAACGATGGACGCACCTCGCTGCGGGTCGGCATGGGCCTGTCGCAG 
ATCGGCGAGTTCTCCTTCATCATCGCCGCCCTGGGCATGACCCTGAAAGTCACCAGTGACTTCCTCTACCCG 
GTGGCGGTAGCGGTCTCGGCCATCACCACCCTGCTCACCCCGTACCTGATCCGCGCCGCCGATCCGCTCTCG 
CAGCACCTGGCCAACGCCATGCCGCAGCGCATGGCGAGGATCTTCGGCCACTACGGCGACTGGCTGCGCAGC 
ATCCAGCCGCAGGGCGACCGTGCGGTGCTGGCGGCGATGATCCGGCGCATCCTGCTGCAAGTCGGGGTGAAC 
CTGGCGCTGGTGATCGCGATCTTCCTCGCCGGCGGTTATTTCGCCGATACGCTTTCCGCCTGGATGAGCCAG 
TGGGTCGCCTACGATGGACTGCACAAGGCATTGATCTGGGGCGGCGCGCTGCTGGTCTCGCTGGCCTTCCTG 
ATCGCCGCGTACCGCAAGCTCAAGGCTCTGTCGATGCTGCTGGCCGAACTCGGGGTCAAGCCGGAGAAAGCC 
GGACGCCATACGGCGCGGGTACGTCGGGTGATCTCCGAGATCATCCCGCTGCTGTCGCTGGCCGGCATGATG 
GTGCTGCTGGCTGCGCTCAGCTCGAGCATCCTGCCGCCGGGCGAGTTGCTGATCGTGGTGGCGCTGGTCGCC 
GGCCTGGTGATCGCAGTGCTCTGGCGCTGGCTGATCCGCGTGCATTCGCGGATGCAGATCGCCCTGATGGAA 
ACCCTCGACCAGGAAAAGGGCAGCCACTGA