ViewGene
Locus Name:
GeneID:
Location:

GeneID:5875
TrivialName: PA14_38000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38000
PAO1 Ortholog Locus:
Sequence Length:465
Protein Length:154
Start: 3390035
Stop: 3390499
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN67780.1|AE016409_6 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 76/146 (52%), Positives = 92/146 (63%), Gaps = 16/146 (10%)
Sequence:
ATGTCCGCCTCGCTCCCCAACGACACCCCGCCCAACGACACCCTGCCCCTGGTCCTGGCCGGCCCCCTGCTG
CGCCGCGCAGAGCCCGAGCGCCTGGTGTTCTGGCTGGCCACGTCATGCCCGACGACCATCGAACTGATCCTC
GCCAGCGAAGGCGAGGCGGAGCGTCGGATCCGCCTCGCGGAAGGAACCCACTCggCCATCCGCATCGGCACC
CATGCCTGGCTGCACCTGCTGGATGTCGCGCTCGACCCGCCGTTGCCCTGCGCCCGCCTGGTCGACTACGAC
CTGCGCCTCgccgccGACggcgGGGAGCCCGCgGGAaTCGCCGAATGGGCGCCGCATCTGCTCTACCCCGGT
CGCCAGCGCGCCAGcCTGGTGCTCAAGCCACGTCTCGACcagttgCtccacggctcCTGCcGCAAGCCGCAt
cACCCGGGcggccgatggGccTGCTGCAGgtag
Translation:
MSASLPNDTPPNDTLPLVLAGPLLRRAEPERLVFWLATSCPTTIELILASEGEAERRIRLAEGTHSAIRIGT
HAWLHLLDVALDPPLPCARLVDYDLRLAADGGEPAGIAEWAPHLLYPGRQRASLVLKPRLDQLLHGSCRKPH
HPGGRWACCR*
AnnotationID:5876GeneID:5875
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 01:01:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84327567|ref|ZP_00975585.1|  hypothetical protein Paer2_01001159 [Pseudomonas aeruginosa 2192]
Length=664

 Score =  288 bits (736),  Expect = 6e-77
 Identities = 139/146 (95%), Positives = 142/146 (97%), Gaps = 0/146 (0%)

gi|94416405|ref|ZP_01296231.1|  hypothetical protein PaerP_01001728 [Pseudomonas aeruginosa PA7]
Length=659

 Score =  218 bits (555),  Expect = 6e-56
 Identities = 110/143 (76%), Positives = 116/143 (81%), Gaps = 3/143 (2%)

gi|67157339|ref|ZP_00418641.1|  conserved hypothetical protein [Azotobacter vinelandii AvOP]
 gi|67085606|gb|EAM05079.1|  conserved hypothetical protein [Azotobacter vinelandii AvOP]
Length=668

 Score =  152 bits (383),  Expect = 5e-36
 Identities = 80/146 (54%), Positives = 95/146 (65%), Gaps = 4/146 (2%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:11663




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28870




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5875
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197892
                           gb|AAN67780.1|AE016409_6
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           638
                           12.06
                           14.73
                           506
                           367.0
     

     
     
197893
                           gb|AAO54535.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           679
                           10.30
                           12.81
                           533
                           304.0
     

     






      

          
GC ORFID: 48877How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1563875Stop: 1563411

          
Length: 465


          
Start Codon: ATGTruncated Start:

          
Stop Codon: tagTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold3_revised_gene5151 related to: gi|15597245|ref|NP_250739.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||H83389 hypothetical protein PA2049 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05437.1|AE004631_6 (Homolog Bit Score 112.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5151 related to: gi|15597245|ref|NP_250739.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||H83389 hypothetical protein PA2049 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05437.1|AE004631_6 (AE004631) hypothetical protein [Pseudomonas-TRUNCATED- (BLASTP 112)

          
GC ORF Sequence

           
ATGTCCGCCTCGCTCCCCAACGACACCCCGCCCAACGACACCCTGCCCCTGGTCCTGGCCGGCCCCCTGCTG 
CGCCGCGCAGAGCCCGAGCGCCTGGTGTTCTGGCTGGCCACGTCATGCCCGACGACCATCGAACTGATCCTC 
GCCAGCGAAGGCGAGGCGGAGCGTCGGATCCGCCTCGCGGAAGGAACCCACTCggCCATCCGCATCGGCACC 
CATGCCTGGCTGCACCTGCTGGATGTCGCGCTCGACCCGCCGTTGCCCTGCGCCCGCCTGGTCGACTACGAC 
CTGCGCCTCgccgccGACggcgGGGAGCCCGCgGGAaTCGCCGAATGGGCGCCGCATCTGCTCTACCCCGGT 
CGCCAGCGCGCCAGcCTGGTGCTCAAGCCACGTCTCGACcagttgCtccacggctcCTGCcGCAAGCCGCAt 
cACCCGGGcggccgatggGccTGCTGCAGgtag