ViewGene
Locus Name:
GeneID:
Location:

GeneID:587
TrivialName: PA14_46960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46960
PAO1 Ortholog Locus:PA1338
Sequence Length:1674
Protein Length:557
Start: 4181255
Stop: 4182928
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04727.1|AE004563_4 (AE004563) gamma-glutamyltranspeptidase precursor [Pseudomonas aeruginosa PAO1]
Identities = 557/557 (100%), Positives = 557/557 (100%)
Sequence:
ATGCAACCTGTGCTCTTCAGAACCCTGTCCCTCGGCGTCGCCATTGCCGCCGCATCCTCCTCGGCCTTCGCC
GCCACGCTCGACGGCGGCGCCGTCGCCGCGCCCGACGAGTACGGCGCCAAGGTCGCCGCGCAGATCCTCAAG
GCCGGCGGCAACGCGGTGGACGCCGCGGTGGCCACCGCCTTCACCCTGGCGGTCACCTACCCCGAGGCCGGC
AACATCGGCGGCGGCGGCTTCATGACCCTGTACATGGACGGCAAGCCGTACTTCCTCGACTACCGCGAGGTG
GCGCCGAAGGCCGCGAGCAAAACCATGTACCTGGACGACAAGGGCGAGGTGATCGAGAACCTCAGCCTGGTC
GGCGCCAAGGCCGCCGGCGTGCCGGGCACCGTGATGGGCCTCTGGGAAGCCCACAAGCGTTTCGGCAAGCTG
CCCTGGAGCGAGCTGCTGACCCCGGCCATCGGCTACGCGCAAAAGGGCTTCAAGGTCGCCGACAAGCAGTTC
CAGTACCGCCAGGACGCCGTCGCGCTGTTCAACGGCAAGACCAACTTCGGCGACTACTTCGGCCACATGAAG
GCCGGCGAGGCGTTCCTCCAGCCGGACCTGGCGAAGACCCTGGAGCGTATCGCCGACAAGGGCCCGGACGAG
TTCTACAAAGGCCATACCGCCGACCTGCTGGTGGCACAGATGCAGCAGGACAAGGGACTGATCACCCACCAG
GACCTCGCCGACTACAAGGTCAGGTGGCGCGAACCGATGCGCGTCGACTGGCAGGGCAACACACTCTATACC
GCGCCGCTGCCAAGCTCCGGCGGGATCGCCCTGGCCCAGTTGCTGGGCATCAAGGAAAACCGTGCCGCCGAC
TTCAAGGGCGTCGAGCTGAATTCCGCGCGCTACATCCACCTGCTGGCGGAGATCGAGAAACGCGTGTTCGCC
GACCGCGCCGACTACCTCGGCGATCCGGACTTCTCCAAGGTCCCGGTGGCGCGCCTGACCGATCCGGCATAC
CTGAAGCAGCGTGCCGCCGAGGTCAACCCGACGGCGATCTCGCCGACCGAGAAGGTCCGTCCCGGCCTGGAA
CCGCACCAGACCACGCACTTCTCCATCGTCGACGCCGACGGCAACGCGGTGAGCAACACCTACACCCTCAAC
TGGGACTTCGGCAGCGGCGTGGTGGTCAAGGGCGCCGGCTTCCTGCTCAACGACGAGATGGACGACTTCAGC
GCCAAACCGGGCGTGGCCAACGCCTTCGGCGTGGTCGGCAGCGACGCCAACGCCATCGAGCCGGGCAAGCGC
ATGCTCTCCTCGATGAGCCCGAGCATCGTCACCCGCGACGGCAAGGTCAGCCTGGTGGTCGGCACGCCCGGC
GGCTCGCGGATCTTCACCTCGATCTTCCAGGTGCTGAACAACATCTACGACTTCCACCTGCCGCTGGAGAAG
GCCGTGGCCGCGCAGCGCGTGCACCACCAGTTGCTGCCCAAGGACACGATCTACTACGACGCCTACGCGCCG
CTCGCCGGCAAGGTCGCCGAGGAGCTGAAGGCGATGGGCTACACCCTGGAGGACCAGGGCTGGAACATGGGC
GATATCCAGGCCATCCGCGTCGACGGCAAGGCCCTGGAGACCGCCTCCGATCCCCGTGGCCGCGGCGTCGGC
CTGGTGGTGAAACCCTGA
Translation:
MQPVLFRTLSLGVAIAAASSSAFAATLDGGAVAAPDEYGAKVAAQILKAGGNAVDAAVATAFTLAVTYPEAG
NIGGGGFMTLYMDGKPYFLDYREVAPKAASKTMYLDDKGEVIENLSLVGAKAAGVPGTVMGLWEAHKRFGKL
PWSELLTPAIGYAQKGFKVADKQFQYRQDAVALFNGKTNFGDYFGHMKAGEAFLQPDLAKTLERIADKGPDE
FYKGHTADLLVAQMQQDKGLITHQDLADYKVRWREPMRVDWQGNTLYTAPLPSSGGIALAQLLGIKENRAAD
FKGVELNSARYIHLLAEIEKRVFADRADYLGDPDFSKVPVARLTDPAYLKQRAAEVNPTAISPTEKVRPGLE
PHQTTHFSIVDADGNAVSNTYTLNWDFGSGVVVKGAGFLLNDEMDDFSAKPGVANAFGVVGSDANAIEPGKR
MLSSMSPSIVTRDGKVSLVVGTPGGSRIFTSIFQVLNNIYDFHLPLEKAVAAQRVHHQLLPKDTIYYDAYAP
LAGKVAEELKAMGYTLEDQGWNMGDIQAIRVDGKALETASDPRGRGVGLVVKP*
AnnotationID:596GeneID:587
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 09:09:27
Gene Name:ggt
Confidence Code:2
GeneProduct:gamma-glutamyltranspeptidase precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01019
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:2.3.2.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70232.1|AE016662_8 (AE016791) gamma-glutamyltransferase [Pseudomonas putida KT2440]
          Length = 555

 Score =  902 bits (2332), Expect = 0.0
 Identities = 446/556 (80%), Positives = 496/556 (89%), Gaps = 1/556 (0%)

>gb|AAK22091.1| (AE005685) gamma-glutamyltransferase [Caulobacter crescentus CB15]
          Length = 583

 Score =  635 bits (1638), Expect = 0.0
 Identities = 332/540 (61%), Positives = 396/540 (73%), Gaps = 4/540 (0%)

>gb|AAO71440.1| (AE016847) gamma-glutamyltranspeptidase precursor [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
          Length = 580

 Score =  428 bits (1101), Expect = e-119
 Identities = 245/530 (46%), Positives = 335/530 (63%), Gaps = 19/530 (3%)






 
Structural Features:
pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase.
CD-Length = 504 residues, 100.0% aligned
Score =  541 bits (1395), Expect = 9e-155
Identities = 244/522 (46%), Positives = 300/522 (57%), Gaps = 33/522 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1177




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18319




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37463




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:587_cdd.html


    		




 
URL:

















    ReferenceID:38008




  
Author/Investigator(s):
        Suzuki H, Kumagai H, Echigo T, Tochikura T.





  
Title:
        DNA sequence of the Escherichia coli K-12 gamma-glutamyltranspeptidase gene, ggt.




  
PubMed:
        2570061


MedLine:
        




    
Source:
J Bacteriol. 1989 Sep;171(9):5169-72.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2570061









           
Homologs By Global Alignment 

           

       



     
Gene ID:587
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1007
                           PA1338_tr
                           translation of PA1338
                           557
                           99.99
                           99.99
                           0
                           2875.0
     

     
     
39549
                           gb|AAG04727.1|AE004563_4
                           (AE004563) gamma-glutamyltranspeptidase precursor [Pseudomonas aeruginosa PAO1]
                           557
                           99.99
                           99.99
                           0
                           2875.0
     

     
     
39550
                           gb|AAN70232.1|AE016662_8
                           (AE016791) gamma-glutamyltransferase [Pseudomonas putida KT2440]
                           557
                           80.07
                           89.04
                           2
                           2334.0
     

     
     
39551
                           gb|AAQ59090.1|
                           (AE016914) g-glutamyltransferase precursor [Chromobacterium violaceum ATCC 12472]
                           560
                           74.28
                           84.28
                           9
                           2171.0
     

     
     
39552
                           gb|AAK22091.1|
                           (AE005685) gamma-glutamyltransferase [Caulobacter crescentus CB15]
                           600
                           56.66
                           68.16
                           60
                           1648.0
     

     






      

          
GC ORFID: 43589How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1338Glimmer Score: 

          
Start: 772654Stop: 770981

          
Length: 1674


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1338 translation of PA1338Homolog Bit Score 1112.0

          
Other Homologs:  t_PA1338 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACCTGTGCTCTTCAGAACCCTGTCCCTCGGCGTCGCCATTGCCGCCGCATCCTCCTCGGCCTTCGCC 
GCCACGCTCGACGGCGGCGCCGTCGCCGCGCCCGACGAGTACGGCGCCAAGGTCGCCGCGCAGATCCTCAAG 
GCCGGCGGCAACGCGGTGGACGCCGCGGTGGCCACCGCCTTCACCCTGGCGGTCACCTACCCCGAGGCCGGC 
AACATCGGCGGCGGCGGCTTCATGACCCTGTACATGGACGGCAAGCCGTACTTCCTCGACTACCGCGAGGTG 
GCGCCGAAGGCCGCGAGCAAAACCATGTACCTGGACGACAAGGGCGAGGTGATCGAGAACCTCAGCCTGGTC 
GGCGCCAAGGCCGCCGGCGTGCCGGGCACCGTGATGGGCCTCTGGGAAGCCCACAAGCGTTTCGGCAAGCTG 
CCCTGGAGCGAGCTGCTGACCCCGGCCATCGGCTACGCGCAAAAGGGCTTCAAGGTCGCCGACAAGCAGTTC 
CAGTACCGCCAGGACGCCGTCGCGCTGTTCAACGGCAAGACCAACTTCGGCGACTACTTCGGCCACATGAAG 
GCCGGCGAGGCGTTCCTCCAGCCGGACCTGGCGAAGACCCTGGAGCGTATCGCCGACAAGGGCCCGGACGAG 
TTCTACAAAGGCCATACCGCCGACCTGCTGGTGGCACAGATGCAGCAGGACAAGGGACTGATCACCCACCAG 
GACCTCGCCGACTACAAGGTCAGGTGGCGCGAACCGATGCGCGTCGACTGGCAGGGCAACACACTCTATACC 
GCGCCGCTGCCAAGCTCCGGCGGGATCGCCCTGGCCCAGTTGCTGGGCATCAAGGAAAACCGTGCCGCCGAC 
TTCAAGGGCGTCGAGCTGAATTCCGCGCGCTACATCCACCTGCTGGCGGAGATCGAGAAACGCGTGTTCGCC 
GACCGCGCCGACTACCTCGGCGATCCGGACTTCTCCAAGGTCCCGGTGGCGCGCCTGACCGATCCGGCATAC 
CTGAAGCAGCGTGCCGCCGAGGTCAACCCGACGGCGATCTCGCCGACCGAGAAGGTCCGTCCCGGCCTGGAA 
CCGCACCAGACCACGCACTTCTCCATCGTCGACGCCGACGGCAACGCGGTGAGCAACACCTACACCCTCAAC 
TGGGACTTCGGCAGCGGCGTGGTGGTCAAGGGCGCCGGCTTCCTGCTCAACGACGAGATGGACGACTTCAGC 
GCCAAACCGGGCGTGGCCAACGCCTTCGGCGTGGTCGGCAGCGACGCCAACGCCATCGAGCCGGGCAAGCGC 
ATGCTCTCCTCGATGAGCCCGAGCATCGTCACCCGCGACGGCAAGGTCAGCCTGGTGGTCGGCACGCCCGGC 
GGCTCGCGGATCTTCACCTCGATCTTCCAGGTGCTGAACAACATCTACGACTTCCACCTGCCGCTGGAGAAG 
GCCGTGGCCGCGCAGCGCGTGCACCACCAGTTGCTGCCCAAGGACACGATCTACTACGACGCCTACGCGCCG 
CTCGCCGGCAAGGTCGCCGAGGAGCTGAAGGCGATGGGCTACACCCTGGAGGACCAGGGCTGGAACATGGGC 
GATATCCAGGCCATCCGCGTCGACGGCAAGGCCCTGGAGACCGCCTCCGATCCCCGTGGCCGCGGCGTCGGC 
CTGGTGGTGAAACCCTGA