ViewGene

Locus Name:
GeneID:
Location:

GeneID:586
TrivialName: PA14_15780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15780
PAO1 Ortholog Locus:PA3761
Sequence Length:1713
Protein Length:570
Start: 1345156
Stop: 1343444
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07148.1|AE004794_13 (AE004794) probable phosphotransferase system protein [Pseudomonas aeruginosa PAO1]
Identities = 569/570 (99%), Positives = 570/570 (100%)
Sequence:
ATGCCCCCGTTCCTGATCGAAAGCCTGCAACGCCTGGGCCGCGCCCTGATGCTGCCGATCGCGATCCTGCCG
ATCGCCGGCCTGCTGCTGCGCCTGGGCGACGTCGACCTGCTCGACATTCCGCTGGTCCACGACGCCGGCAAG
GCGATCTTCGCCAACCTGGCGCTGATCTTCGCCATCGGCATCGCCGTCGGTTTCGCTCGCGACAACAACGGC
ACCGCCGGCCTGGCCGGCGCCATCGGCTACCTGGTGATGATCTCGGTGCTCAAGGTGATCGATCCGGGCATC
GACATGGGCGTGCTCTCCGGCATCATCAGCGGCCTGGTGGCTGGCGCCCTGTATAACCGCTTCAAGGACGTG
AAGCTGCCGGAATACCTGGCGTTCTTCGGCGGCCGCCGCTTCGTGCCGATCGCCACCGGGATCAGCGCGGTC
TGCCTGGGCCTGCTGTTCGGGGTGATCTGGCCACCGCTGCAACAGGGCATCAACGGCCTCGGCCAACTCATG
CTGGAAAGCGGCAGCTTCGGCGCCTTCGCCTTCGGCGTGCTGAACCGCCTGCTGATCGTCACTGGGTTGCAC
CACATCCTCAACAACCTGGTGTGGTTCGTCTTCGGCAGCTTCACCGACCCGGAAACCGGGCGCGTCGTCACC
GGCGACCTGGCGCGTTATTTCGCCGGCGACCCGAAGGGCGGCCAGTTCATGGCCGGGATGTTCCCGGTGATG
ATGTTCGGCCTGCCCGCCGCCTGCCTGGCGATGTACCGCAACGCCCGTCCGGAGCGGCGCAAGCTGATCGGC
GGGCTGCTCCTGTCGATGGCCTTGACCGCCTTCCTCACCGGCGTCACCGAGCCGGTGGAGTTCGCCTTCATG
TTCCTCGCGCCGCTGCTCTACCTGCTGCATGCGCTGCTCACCGGCCTGTCCATGGCCCTCACCGACCTGCTC
GACATCCGCCTCGGCTTCACCTTCTCCGGTGGCGCCATCGACCTCGCCCTGGGCTGGGGCCGCTCCACCCAC
GGCTGGATGCTCTGGCCGCTGGGCCTGCTCTATGCCGGCATCTATTACCTGGTGTTCGACTTCTGCATCCGC
CGCTTCAACCTGAAGACCCCGGGCCGCGAAGACGACGCGAGCAGCGAATCGGGCGACAACGCCGAAGCCGAG
CGCGCCCCGGCATTCATCCGCGCCTTGGGTGGCGCAGCCAACCTCGAAGTGGTGGACGCCTGCACCACGCGC
CTGCGTCTGCGCCTGGTCGACCGCGACAAGGCCTCGGACGCCCAGCTCAAGGCCCTCGGTGCGATGGCCGTG
GTACGTCCGGGCAAGGCCGGCAGCCTGCAGGTGGTGGTCGGCCCACAGGCCGACAGCATCGCCGACGAGATC
CGCCGCGCCCTGCCCTTCGATACGCAACCGGGCGAAGCCGTACCGCCGCTGGGCAGTCCGCACACAGCCGAA
GAGGTGGTGGCGATGCAGGCCACCGTCGACGCCGCCGAAGCCCAGGCCTGGCTCGGCGCCCTCGGCGGCGCC
GGCAACCTGCGCGAGGTACGGGACGTCGCACTGACCCGCCTGCGGGTCAGCGTGGCGGACGAACGCAAGCTG
GCCACCGAGCAACTGCGTCGTCTCGGCGGACAGGGCGTCAGTTCCCTCGCCGGCGGCATCTGCCATATCCTG
GTGGGCCCCCGCGCCGCGGCCCTGAGCCAGGCCCTGCAACCGCTGCTGCGGCGCTGA
Translation:
MPPFLIESLQRLGRALMLPIAILPIAGLLLRLGDVDLLDIPLVHDAGKAIFANLALIFAIGIAVGFARDNNG
TAGLAGAIGYLVMISVLKVIDPGIDMGVLSGIISGLVAGALYNRFKDVKLPEYLAFFGGRRFVPIATGISAV
CLGLLFGVIWPPLQQGINGLGQLMLESGSFGAFAFGVLNRLLIVTGLHHILNNLVWFVFGSFTDPETGRVVT
GDLARYFAGDPKGGQFMAGMFPVMMFGLPAACLAMYRNARPERRKLIGGLLLSMALTAFLTGVTEPVEFAFM
FLAPLLYLLHALLTGLSMALTDLLDIRLGFTFSGGAIDLALGWGRSTHGWMLWPLGLLYAGIYYLVFDFCIR
RFNLKTPGREDDASSESGDNAEAERAPAFIRALGGAANLEVVDACTTRLRLRLVDRDKASDAQLKALGAMAV
VRPGKAGSLQVVVGPQADSIADEIRRALPFDTQPGEAVPPLGSPHTAEEVVAMQATVDAAEAQAWLGALGGA
GNLREVRDVALTRLRVSVADERKLATEQLRRLGGQGVSSLAGGICHILVGPRAAALSQALQPLLRR*
AnnotationID:595GeneID:586
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 11:11:27
Gene Name:
Confidence Code:3
GeneProduct:putative Phosphotransferase system, N-acetylglucosamine-specific enzyme IIABC
Cell Localization:()
Synonyms:nagE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1263,pfam02378
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAB04141.1| (AP001508) PTS system, N-acetylglucosamine-specific enzyme II, ABC
           component [Bacillus halodurans]
          Length = 455

 Score =  493 bits (1269), Expect = e-138
 Identities = 248/458 (54%), Positives = 331/458 (72%), Gaps = 12/458 (2%)

>gb|AAC73773.1| (AE000171) PTS system, N-acetylglucosamine-specific enzyme IIABC
           [Escherichia coli K12]
          Length = 648

 Score =  484 bits (1245), Expect = e-136
 Identities = 255/504 (50%), Positives = 340/504 (67%), Gaps = 14/504 (2%)

Structural Features:
COG1263, PtsG, Phosphotransferase system IIC components, 
glucose/maltose/N-acetylglucosamine-specific 
[Carbohydrate transport and metabolism]
CD-Length = 393 residues,  99.5% aligned
Score =  287 bits (737), Expect = 4e-78
Identities = 166/411 (40%), Positives = 221/411 (53%), Gaps = 53/411 (12%)

pfam02378, PTS_EIIC, Phosphotransferase system, EIIC.
CD-Length = 306 residues, 100.0% aligned
Score =  158 bits (400), Expect = 4e-39
Identities = 109/320 (34%), Positives = 142/320 (44%), Gaps = 43/320 (13%)
Genomic Context:
Comment:
ReferenceID:1175
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18317
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31797
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:586_cdd.html
URL:
Homologs By Global Alignment
Gene ID:586

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1006 PA3761_tr translation of PA3761 570 99.82 99.99 0 2881.0
39457 gb|AAG07148.1|AE004794_13 (AE004794) probable phosphotransferase system protein [Pseudomonas aeruginosa PAO1] 570 99.82 99.99 0 2881.0
39458 gb|AAQ58235.1| (AE016911) protein-N p-phosphohistidine-sugar phosphotransferase [Chromobacterium violaceum ATCC 12472] 575 57.04 71.82 18 1626.0
39459 gb|AAK22525.1| (AE005726) PTS system, N-acetylglucosamine-specific IIABC component [Caulobacter crescentus CB15] 613 49.59 63.78 74 1419.0
39460 gb|AAK22436.1| (AE005718) PTS system, N-acetylglucosamine-specific IIABC component [Caulobacter crescentus CB15] 613 49.10 63.45 72 1399.0
GC ORFID: 43588How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3761Glimmer Score:
Start: 3608781Stop: 3610493
Length: 1713
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3761 translation of PA3761Homolog Bit Score 1114.0
Other Homologs: t_PA3761 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCCCGTTCCTGATCGAAAGCCTGCAACGCCTGGGCCGCGCCCTGATGCTGCCGATCGCGATCCTGCCG
ATCGCCGGCCTGCTGCTGCGCCTGGGCGACGTCGACCTGCTCGACATTCCGCTGGTCCACGACGCCGGCAAG
GCGATCTTCGCCAACCTGGCGCTGATCTTCGCCATCGGCATCGCCGTCGGTTTCGCTCGCGACAACAACGGC
ACCGCCGGCCTGGCCGGCGCCATCGGCTACCTGGTGATGATCTCGGTGCTCAAGGTGATCGATCCGGGCATC
GACATGGGCGTGCTCTCCGGCATCATCAGCGGCCTGGTGGCTGGCGCCCTGTATAACCGCTTCAAGGACGTG
AAGCTGCCGGAATACCTGGCGTTCTTCGGCGGCCGCCGCTTCGTGCCGATCGCCACCGGGATCAGCGCGGTC
TGCCTGGGCCTGCTGTTCGGGGTGATCTGGCCACCGCTGCAACAGGGCATCAACGGCCTCGGCCAACTCATG
CTGGAAAGCGGCAGCTTCGGCGCCTTCGCCTTCGGCGTGCTGAACCGCCTGCTGATCGTCACTGGGTTGCAC
CACATCCTCAACAACCTGGTGTGGTTCGTCTTCGGCAGCTTCACCGACCCGGAAACCGGGCGCGTCGTCACC
GGCGACCTGGCGCGTTATTTCGCCGGCGACCCGAAGGGCGGCCAGTTCATGGCCGGGATGTTCCCGGTGATG
ATGTTCGGCCTGCCCGCCGCCTGCCTGGCGATGTACCGCAACGCCCGTCCGGAGCGGCGCAAGCTGATCGGC
GGGCTGCTCCTGTCGATGGCCTTGACCGCCTTCCTCACCGGCGTCACCGAGCCGGTGGAGTTCGCCTTCATG
TTCCTCGCGCCGCTGCTCTACCTGCTGCATGCGCTGCTCACCGGCCTGTCCATGGCCCTCACCGACCTGCTC
GACATCCGCCTCGGCTTCACCTTCTCCGGTGGCGCCATCGACCTCGCCCTGGGCTGGGGCCGCTCCACCCAC
GGCTGGATGCTCTGGCCGCTGGGCCTGCTCTATGCCGGCATCTATTACCTGGTGTTCGACTTCTGCATCCGC
CGCTTCAACCTGAAGACCCCGGGCCGCGAAGACGACGCGAGCAGCGAATCGGGCGACAACGCCGAAGCCGAG
CGCGCCCCGGCATTCATCCGCGCCTTGGGTGGCGCAGCCAACCTCGAAGTGGTGGACGCCTGCACCACGCGC
CTGCGTCTGCGCCTGGTCGACCGCGACAAGGCCTCGGACGCCCAGCTCAAGGCCCTCGGTGCGATGGCCGTG
GTACGTCCGGGCAAGGCCGGCAGCCTGCAGGTGGTGGTCGGCCCACAGGCCGACAGCATCGCCGACGAGATC
CGCCGCGCCCTGCCCTTCGATACGCAACCGGGCGAAGCCGTACCGCCGCTGGGCAGTCCGCACACAGCCGAA
GAGGTGGTGGCGATGCAGGCCACCGTCGACGCCGCCGAAGCCCAGGCCTGGCTCGGCGCCCTCGGCGGCGCC
GGCAACCTGCGCGAGGTACGGGACGTCGCACTGACCCGCCTGCGGGTCAGCGTGGCGGACGAACGCAAGCTG
GCCACCGAGCAACTGCGTCGTCTCGGCGGACAGGGCGTCAGTTCCCTCGCCGGCGGCATCTGCCATATCCTG
GTGGGCCCCCGCGCCGCGGCCCTGAGCCAGGCCCTGCAACCGCTGCTGCGGCGCTGA