ViewGene

Locus Name:
GeneID:
Location:

GeneID:5858
TrivialName: PA14_38740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38740
PAO1 Ortholog Locus:PA1992
Sequence Length:1785
Protein Length:594
Start: 3456069
Stop: 3454285
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05380.1|AE004625_10 (AE004625) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 560/563 (99%), Positives = 561/563 (99%)
Sequence:
ATGGCGAGGCCCTCTGAGCAGCAGCAGGAGGCCCTGGCCGGGTTGCTCGGCCTGGGCAGCCACTCCGCGCGC
AAGAGCCACTACCCGGAGCTGCTGGCGCGCCTGGAGGAGCTGGAGGCCGAGCGCAACCGCTACAAATGGCTG
TTCGAGCACGCGGTGCACGGCATCTTCCAGGCCAGCCTCGGCCAGGGGCTGCGCGCCGCCAATCCGGCGCTG
GCGCAGATGCTCGGCTACGACGATCCGCAACAGGTGCTCTGGTCGCTGGAGGACATGGCCGGGCAACTGTTC
GTCGGCGGCGAGGCCGAGATGCGACGGATCCGCGCGCTGCTGCGCGAGCGCGGCGGCCTGTTCGGCTACGAG
ACGCGCCTCTGGCGCAGGGACGGCAGTCACATCGAGGTATTGATGAACCTGCTGCTCAGGCACGACGAGGAA
GAATTGGTCGAAGGTTTTGTCGCCGACATCACCGAGCGGGTCCAGGCCCAGCAGCGCCTGCAGACCATGAAC
GAGGAGCTGGAGCGGCGGGTAGCCGAGCGCACCCACGAGCTGGAAGAGCTCAACCGCCAGTTGCGCCAGGCG
CGCGACGCCGCCGAAGCCGCCAACCACAGCAAGGACAAGTACCTCGCCGCCGCCAGCCACGACCTGCTGCAA
CCGCTCAACGCGGCGCGGCTGCTGGTCGACACCCTGCGTGAGCGGGGCCTGCCGGCCGCCGAACTGCAACTG
GTGGAGCGCACCCACCTGGCCCTGGAAGGCGCCGAGACCTTGCTCACCGACCTGCTGGAAATCGCCCGGCTC
GACCAGAGCGCGATCCGTCCGGACCTGGACGACTATTCCCTCGACGAACTGCTCGCTCCGCTGGCCTCGGAG
TTCGAGGAAGTCGCGCGTGCCGCCGGCCTGGCCCTGCGTGCGCGGATCCCACGACTGGCAGTGCGCACCGAC
GCGCGCCTGCTGTCGCGGATCCTGCGCAACTTGCTCAGCAACGCCTGCCGCTACACCGAGCGCGGCAGCGTG
CTGCTGGGCGCGCGCCGGCGTGGCGGCAAGGTACGCCTGGAGGTATGGGACACTGGCCGGGGCATCCCCGCC
GACCAGTTGCAGGCGATCTTCCTCGAGTTCAACCAACTGGACGCCGGGCGCGCTTCCGAGCGCCGTGGCGTC
GGGCTCGGGTTGGCCATCGTCGACCGTATCGCCGGCATCCTCGGCTACCGCATCGAGGTGCATTCGACTCCC
GGCCGAGGCTCGCTGTTCGCCATCGAGGTGCCGCTGGTCCGCAAGCCAGCGCGGCCAGTGCCCGGCGAGGCG
ACTGCGCGGCTTTCGGCCGGCGATCCGCTGCCGGGACGGCGGCTGCTGGTGGTGGACAACGAGACCGAGATT
CTCTTCAGCATGTCCGCGCTGCTCGGCCAGTGGGGCTGCGAGGTGCTTACCGCCACCGACCTGGAAGGCGCG
CGCAAGGCGCTCGATGGCCGCGCGCCGGATGCGATCCTGGTCGACTACCACCTGGACCACGGCGCTACCGGT
TGCCAGTTGCTGGGCGCCTTGCGCGAGGACTACGGCGCGGAGATCGCCGCGGTGATGATCACCGCCGACCGC
AGCGACGATTGCCGCCGCGCGCTGGCCCGCCTGGGCGTGCCGCTGCTCAACAAGCCGCTGAAGCCCGGCAAG
TTGCGCGCGGCGCTAAGCGCCTTGCTCGGCGAGGCCCAGGGCGCTCCCCGCGGCGCCGGAGAAGGTGCAGGT
CCTAGCCCGGCCGGCGGCTGCGTCGGTGCAGCGCAATGGCCAGGGCCAGCCCGCTGA
Translation:
MARPSEQQQEALAGLLGLGSHSARKSHYPELLARLEELEAERNRYKWLFEHAVHGIFQASLGQGLRAANPAL
AQMLGYDDPQQVLWSLEDMAGQLFVGGEAEMRRIRALLRERGGLFGYETRLWRRDGSHIEVLMNLLLRHDEE
ELVEGFVADITERVQAQQRLQTMNEELERRVAERTHELEELNRQLRQARDAAEAANHSKDKYLAAASHDLLQ
PLNAARLLVDTLRERGLPAAELQLVERTHLALEGAETLLTDLLEIARLDQSAIRPDLDDYSLDELLAPLASE
FEEVARAAGLALRARIPRLAVRTDARLLSRILRNLLSNACRYTERGSVLLGARRRGGKVRLEVWDTGRGIPA
DQLQAIFLEFNQLDAGRASERRGVGLGLAIVDRIAGILGYRIEVHSTPGRGSLFAIEVPLVRKPARPVPGEA
TARLSAGDPLPGRRLLVVDNETEILFSMSALLGQWGCEVLTATDLEGARKALDGRAPDAILVDYHLDHGATG
CQLLGALREDYGAEIAAVMITADRSDDCRRALARLGVPLLNKPLKPGKLRAALSALLGEAQGAPRGAGEGAG
PSPAGGCVGAAQWPGPAR*
AnnotationID:5859GeneID:5858
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 17:05:22
Gene Name:
Confidence Code:3
GeneProduct:putative sensory box histidine kinase/response regulator
Cell Localization:()
Synonyms:PA1992
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68291.1|AE016463_5 (AE016784) sensory box histidine kinase/response regulator
           [Pseudomonas putida KT2440]
          Length = 567

 Score =  758 bits (1958), Expect = 0.0
 Identities = 402/561 (71%), Positives = 451/561 (80%), Gaps = 8/561 (1%)

>dbj|BAC51154.1| (AP005956) two-component hybrid sensor and regulator [Bradyrhizobium
            japonicum USDA 110]
          Length = 1190

 Score =  321 bits (823), Expect = 7e-87
 Identities = 202/472 (42%), Positives = 271/472 (57%), Gaps = 47/472 (9%)

>emb|CAC45125.1| (AL591784) PUTATIVE SENSORY TRANSDUCTION HISTIDINE KINASE
            TRANSMEMBRANE PROTEIN [Sinorhizobium meliloti]
          Length = 1168

 Score =  317 bits (811), Expect = 2e-85
 Identities = 184/418 (44%), Positives = 255/418 (61%), Gaps = 5/418 (1%)

Structural Features:
COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
CD-Length = 336 residues,  98.2% aligned
Score =  134 bits (337), Expect = 3e-32
Identities = 90/335 (26%), Positives = 137/335 (40%), Gaps = 7/335 (2%)
Genomic Context:
Comment:
ReferenceID:11632
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28839
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32734
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5858_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5858

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7923 PA1992_tr translation of PA1992 594 94.27 94.44 30 2811.0
197793 gb|AAG05380.1|AE004625_10 (AE004625) probable two-component sensor [Pseudomonas aeruginosa PAO1] 594 94.27 94.44 30 2811.0
197794 gb|AAN68291.1|AE016463_5 (AE016784) sensory box histidine kinase/response regulator [Pseudomonas putida KT2440] 611 65.95 73.97 61 1960.0
197799 gb|AAN68272.1|AE016461_8 (AE016784) sensory box histidine kinase/response regulator [Pseudomonas putida KT2440] 704 32.52 44.60 159 838.0
197809 dbj|BAB48575.1| (AP002996) probable two-component sensor [Mesorhizobium loti] 613 30.01 41.59 186 743.0
GC ORFID: 48860How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1497842Stop: 1499626
Length: 1785
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1992 translation of PA1992Homolog Bit Score 1087.0
Other Homologs: t_PA1992 translation of PA1992 (BLASTP 1087), t_PA1976 translation of PA1976 (BLASTP 321), t_PA3271 translation of PA3271 (BLASTP 321), psyr_15may02_Scaffold10_revised_gene1526 related to: gi|15598467|ref|NP_251961.1| (NC_002516) probable two-component sensor [Pseudomonas aeruginosa] pir||E83237 probable two-component sensor PA3271 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06659.1|AE004749_8 (AE004749) probable two--TRUNCATED- (BLASTP 311)
GC ORF Sequence
ATGGCGAGGCCCTCTGAGCAGCAGCAGGAGGCCCTGGCCGGGTTGCTCGGCCTGGGCAGCCACTCCGCGCGC
AAGAGCCACTACCCGGAGCTGCTGGCGCGCCTGGAGGAGCTGGAGGCCGAGCGCAACCGCTACAAATGGCTG
TTCGAGCACGCGGTGCACGGCATCTTCCAGGCCAGCCTCGGCCAGGGGCTGCGCGCCGCCAATCCGGCGCTG
GCGCAGATGCTCGGCTACGACGATCCGCAACAGGTGCTCTGGTCGCTGGAGGACATGGCCGGGCAACTGTTC
GTCGGCGGCGAGGCCGAGATGCGACGGATCCGCGCGCTGCTGCGCGAGCGCGGCGGCCTGTTCGGCTACGAG
ACGCGCCTCTGGCGCAGGGACGGCAGTCACATCGAGGTATTGATGAACCTGCTGCTCAGGCACGACGAGGAA
GAATTGGTCGAAGGTTTTGTCGCCGACATCACCGAGCGGGTCCAGGCCCAGCAGCGCCTGCAGACCATGAAC
GAGGAGCTGGAGCGGCGGGTAGCCGAGCGCACCCACGAGCTGGAAGAGCTCAACCGCCAGTTGCGCCAGGCG
CGCGACGCCGCCGAAGCCGCCAACCACAGCAAGGACAAGTACCTCGCCGCCGCCAGCCACGACCTGCTGCAA
CCGCTCAACGCGGCGCGGCTGCTGGTCGACACCCTGCGTGAGCGGGGCCTGCCGGCCGCCGAACTGCAACTG
GTGGAGCGCACCCACCTGGCCCTGGAAGGCGCCGAGACCTTGCTCACCGACCTGCTGGAAATCGCCCGGCTC
GACCAGAGCGCGATCCGTCCGGACCTGGACGACTATTCCCTCGACGAACTGCTCGCTCCGCTGGCCTCGGAG
TTCGAGGAAGTCGCGCGTGCCGCCGGCCTGGCCCTGCGTGCGCGGATCCCACGACTGGCAGTGCGCACCGAC
GCGCGCCTGCTGTCGCGGATCCTGCGCAACTTGCTCAGCAACGCCTGCCGCTACACCGAGCGCGGCAGCGTG
CTGCTGGGCGCGCGCCGGCGTGGCGGCAAGGTACGCCTGGAGGTATGGGACACTGGCCGGGGCATCCCCGCC
GACCAGTTGCAGGCGATCTTCCTCGAGTTCAACCAACTGGACGCCGGGCGCGCTTCCGAGCGCCGTGGCGTC
GGGCTCGGGTTGGCCATCGTCGACCGTATCGCCGGCATCCTCGGCTACCGCATCGAGGTGCATTCGACTCCC
GGCCGAGGCTCGCTGTTCGCCATCGAGGTGCCGCTGGTCCGCAAGCCAGCGCGGCCAGTGCCCGGCGAGGCG
ACTGCGCGGCTTTCGGCCGGCGATCCGCTGCCGGGACGGCGGCTGCTGGTGGTGGACAACGAGACCGAGATT
CTCTTCAGCATGTCCGCGCTGCTCGGCCAGTGGGGCTGCGAGGTGCTTACCGCCACCGACCTGGAAGGCGCG
CGCAAGGCGCTCGATGGCCGCGCGCCGGATGCGATCCTGGTCGACTACCACCTGGACCACGGCGCTACCGGT
TGCCAGTTGCTGGGCGCCTTGCGCGAGGACTACGGCGCGGAGATCGCCGCGGTGATGATCACCGCCGACCGC
AGCGACGATTGCCGCCGCGCGCTGGCCCGCCTGGGCGTGCCGCTGCTCAACAAGCCGCTGAAGCCCGGCAAG
TTGCGCGCGGCGCTAAGCGCCTTGCTCGGCGAGGCCCAGGGCGCTCCCCGCGGCGCCGGAGAAGGTGCAGGT
CCTAGCCCGGCCGGCGGCTGCGTCGGTGCAGCGCAATGGCCAGGGCCAGCCCGCTGA