ViewGene
Locus Name:
GeneID:
Location:

GeneID:585
TrivialName: PA14_21210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21210
PAO1 Ortholog Locus:PA3310
Sequence Length:1656
Protein Length:551
Start: 1834819
Stop: 1836474
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06698.1|AE004753_6 (AE004753) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 551/551 (100%), Positives = 551/551 (100%)
Sequence:
ATGGGTGGGGGTATCAAGCGTTTCTTGCCGGCTATCGGTTCGACCCGGCTGGTGATGCTGTTCGCGCTGGTT
CTGGTGGTGTTCTACAACGCGGCGACCTGGAAGGCCCTGCATGGCCTGGTGCCGCTGCAAGGCTTGAAGGGC
TTCGCGTTCTTCGCTTCGTTCGCGGCGTTCCTGTGGGCCGCCTTCACGCTCCTGCTGACCCTGGTTTCCTTC
CGCCCGCTGCTCAAGCCGGCCTTGACCCTGGTCGCCCTGTGCTCGGCCGGCGCGACCTACTTCATGGGTAGC
TACGGCATCAGCATCGACACGGTGATGGTGCAGAACGTCTTCGAGACCAACGCCACCGAGGCCGGCGACCTG
GTCAACCCAACCCTGCTCGGCTATCTGCTGTTGCTCGGTGTCCTGCCTTCGCTGCTGATCTGGCTCTGGCCG
GTACGCTACCGGCCGTTCTTCCGCGGCCTGCTGAACAAGATCCTGACGCTGCTCGGCTGCCTGCTGATCGTC
GCGGTAATGGTAGGCAGCTTCTATTCCACCTACGCGCCGATCTTCCGCGAGGAAGACAAGCTGACCCACTTC
ATCAACCCGACCAACTACATCTACGCGGTGGGCAAGTACGCCAAGCAGCGCCTGGTGATCAAGGAGCACCTG
GTGGTCGAGCCGATCGGCCTGGACGCCCGCCAGGCGCCGGCTGCGCTGCAGCGACAGAAGAAATCGCTGCTG
GTGTTCGTGGTCGGCGAGACCGCCCGTGCCGACCATTTCTCGCTGAACGGCTACGCCCGCGAGACCAACCCG
GAGCTGAGCAAGCAGGACATCGTCAACTTCACCCAGGTCCGTTCCTGCGGCACTTCCACCGCGGTCTCGGTG
CCCTGCATGTTCTCCCAGTACCCGCGCGAGGACTACAGCGACAAGAAGGCCAAGACCCACGAAGGCCTGCTG
GACATTCTCCAGCGTGCCGGCGTGCAGGTGTTGTGGCTGGAGAACAACAGCGACTGCAAGGGCACCTGCCTG
CGGGTGCCCAACCGGGACATCCCGAAGACCCAGCCGAGTCCGTTCTGCGACGGCAAGAACTGCCTGGACGAG
TCGCTGCTGGTAGGCCTGCAGGAGTACATCGACGGGTTGCAGGACGACGCCATCATCGTCCTGCACTCCGAT
GGCAGCCACGGTCCCGAGTACTACGAGCGCTACCCGAAGGAGATGGAGCGCTTCCAGCCGGTATGCCGGACC
AACCAGCTCGGCAGTTGCAGCAAGGAAGAGCTGGTGAACGTCTACGACAACACCATCCTCTATACCGACCAC
TTCCTGACGAAGGTGATCGAATTGCTCAAGCGGAATGCCGACAAGCGCGATACGGCGATGATCTACGTGTCC
GACCACGGCGAGTCGCTGGGCGAGAATGGCGTCTACCTGCACGCGGCGCCCTATTCGATCGCGCCCCAGGCG
CAGATCCACGTGCCGATGGTCATGTGGTTCGCCCCGCAGGCGCTGGGCAACTGGGGCATCCAGCGCAGTTGC
CTGGACGGCAAGCGCGACGACAAGGACCTGAGCCACGACAACCTGTTCCACTCGGTTCTCGGCCTGCTGGAC
GTACAGACTTCGTTGTACCAGCCGGCGCTGGACATCTTCGCCAGTTGCCGCGCGCCCAGGGCAGCCCAGTGA
Translation:
MGGGIKRFLPAIGSTRLVMLFALVLVVFYNAATWKALHGLVPLQGLKGFAFFASFAAFLWAAFTLLLTLVSF
RPLLKPALTLVALCSAGATYFMGSYGISIDTVMVQNVFETNATEAGDLVNPTLLGYLLLLGVLPSLLIWLWP
VRYRPFFRGLLNKILTLLGCLLIVAVMVGSFYSTYAPIFREEDKLTHFINPTNYIYAVGKYAKQRLVIKEHL
VVEPIGLDARQAPAALQRQKKSLLVFVVGETARADHFSLNGYARETNPELSKQDIVNFTQVRSCGTSTAVSV
PCMFSQYPREDYSDKKAKTHEGLLDILQRAGVQVLWLENNSDCKGTCLRVPNRDIPKTQPSPFCDGKNCLDE
SLLVGLQEYIDGLQDDAIIVLHSDGSHGPEYYERYPKEMERFQPVCRTNQLGSCSKEELVNVYDNTILYTDH
FLTKVIELLKRNADKRDTAMIYVSDHGESLGENGVYLHAAPYSIAPQAQIHVPMVMWFAPQALGNWGIQRSC
LDGKRDDKDLSHDNLFHSVLGLLDVQTSLYQPALDIFASCRAPRAAQ*
AnnotationID:594GeneID:585
AnnotatorUID: diggins
Modification Date/Time: 2006-01-15 16:04:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3310
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:putative membrane protein
Functional Category Confidence Code:5
COGs:COG2194
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58999.1| (AE016876) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 549

 Score =  477 bits (1228), Expect = e-134
 Identities = 244/533 (45%), Positives = 341/533 (63%), Gaps = 6/533 (1%)

>gb|AAN70165.1|AE016655_10 (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 545

 Score =  474 bits (1219), Expect = e-133
 Identities = 244/536 (45%), Positives = 338/536 (63%), Gaps = 4/536 (0%)

>emb|CAC91182.1| (AJ414152) putative membrane protein [Yersinia pestis CO92]
          Length = 545

 Score =  456 bits (1174), Expect = e-127
 Identities = 225/530 (42%), Positives = 329/530 (62%), Gaps = 2/530 (0%)








 
Structural Features:
COG2194, Predicted membrane-associated, metal-dependent hydrolase
CD-Length = 555 residues,  98.6% aligned
Score =  573 bits (1477), Expect = 2e-164
Identities = 238/556 (42%), Positives = 325/556 (58%), Gaps = 20/556 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1173




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18315




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:585
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1004
                           PA3310_tr
                           translation of PA3310
                           551
                           99.99
                           99.99
                           0
                           2881.0
     

     
     
39415
                           gb|AAG06698.1|AE004753_6
                           (AE004753) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           551
                           99.99
                           99.99
                           0
                           2881.0
     

     
     
1005
                           PA1972_tr
                           translation of PA1972
                           582
                           45.87
                           62.02
                           46
                           1361.0
     

     
     
39416
                           gb|AAG05360.1|AE004623_10
                           (AE004623) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           582
                           45.87
                           62.02
                           46
                           1361.0
     

     
     
39418
                           gb|AAN70165.1|AE016655_10
                           (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
                           553
                           44.30
                           62.02
                           10
                           1219.0
     

     






      

          
GC ORFID: 43587How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3310Glimmer Score: 

          
Start: 3119112Stop: 3117457

          
Length: 1656


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3310 translation of PA3310Homolog Bit Score 1114.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1734 (ORF: BLASTX 468.0), t_PA3310 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTGGGGGTATCAAGCGTTTCTTGCCGGCTATCGGTTCGACCCGGCTGGTGATGCTGTTCGCGCTGGTT 
CTGGTGGTGTTCTACAACGCGGCGACCTGGAAGGCCCTGCATGGCCTGGTGCCGCTGCAAGGCTTGAAGGGC 
TTCGCGTTCTTCGCTTCGTTCGCGGCGTTCCTGTGGGCCGCCTTCACGCTCCTGCTGACCCTGGTTTCCTTC 
CGCCCGCTGCTCAAGCCGGCCTTGACCCTGGTCGCCCTGTGCTCGGCCGGCGCGACCTACTTCATGGGTAGC 
TACGGCATCAGCATCGACACGGTGATGGTGCAGAACGTCTTCGAGACCAACGCCACCGAGGCCGGCGACCTG 
GTCAACCCAACCCTGCTCGGCTATCTGCTGTTGCTCGGTGTCCTGCCTTCGCTGCTGATCTGGCTCTGGCCG 
GTACGCTACCGGCCGTTCTTCCGCGGCCTGCTGAACAAGATCCTGACGCTGCTCGGCTGCCTGCTGATCGTC 
GCGGTAATGGTAGGCAGCTTCTATTCCACCTACGCGCCGATCTTCCGCGAGGAAGACAAGCTGACCCACTTC 
ATCAACCCGACCAACTACATCTACGCGGTGGGCAAGTACGCCAAGCAGCGCCTGGTGATCAAGGAGCACCTG 
GTGGTCGAGCCGATCGGCCTGGACGCCCGCCAGGCGCCGGCTGCGCTGCAGCGACAGAAGAAATCGCTGCTG 
GTGTTCGTGGTCGGCGAGACCGCCCGTGCCGACCATTTCTCGCTGAACGGCTACGCCCGCGAGACCAACCCG 
GAGCTGAGCAAGCAGGACATCGTCAACTTCACCCAGGTCCGTTCCTGCGGCACTTCCACCGCGGTCTCGGTG 
CCCTGCATGTTCTCCCAGTACCCGCGCGAGGACTACAGCGACAAGAAGGCCAAGACCCACGAAGGCCTGCTG 
GACATTCTCCAGCGTGCCGGCGTGCAGGTGTTGTGGCTGGAGAACAACAGCGACTGCAAGGGCACCTGCCTG 
CGGGTGCCCAACCGGGACATCCCGAAGACCCAGCCGAGTCCGTTCTGCGACGGCAAGAACTGCCTGGACGAG 
TCGCTGCTGGTAGGCCTGCAGGAGTACATCGACGGGTTGCAGGACGACGCCATCATCGTCCTGCACTCCGAT 
GGCAGCCACGGTCCCGAGTACTACGAGCGCTACCCGAAGGAGATGGAGCGCTTCCAGCCGGTATGCCGGACC 
AACCAGCTCGGCAGTTGCAGCAAGGAAGAGCTGGTGAACGTCTACGACAACACCATCCTCTATACCGACCAC 
TTCCTGACGAAGGTGATCGAATTGCTCAAGCGGAATGCCGACAAGCGCGATACGGCGATGATCTACGTGTCC 
GACCACGGCGAGTCGCTGGGCGAGAATGGCGTCTACCTGCACGCGGCGCCCTATTCGATCGCGCCCCAGGCG 
CAGATCCACGTGCCGATGGTCATGTGGTTCGCCCCGCAGGCGCTGGGCAACTGGGGCATCCAGCGCAGTTGC 
CTGGACGGCAAGCGCGACGACAAGGACCTGAGCCACGACAACCTGTTCCACTCGGTTCTCGGCCTGCTGGAC 
GTACAGACTTCGTTGTACCAGCCGGCGCTGGACATCTTCGCCAGTTGCCGCGCGCCCAGGGCAGCCCAGTGA