ViewGene
Locus Name:
GeneID:
Location:

GeneID:583
TrivialName: PA14_69900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69900
PAO1 Ortholog Locus:PA5295
Sequence Length:1677
Protein Length:558
Start: 6235742
Stop: 6234066
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08680.1|AE004942_3 (AE004942) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 558/558 (100%), Positives = 558/558 (100%)
Sequence:
TTGTCAGCGCCCGCAGAACCCTTGCGCCTGCTCCTTCTGGCGGATACGCCGGACTGGGCGCCACTGCTAGGT
GAACGCCTGAGAGCGCTGGGGCCTGCCTTTTCGCTGAGCATCGTCACCACCTGGGAGGGCGCGGCCACCCTG
TTCGCCGCCGAGCCCCGCGGGCTGCTCCTGGCCACGCCGGCCTGCCTGCCGCTGGGGACTCCCTGCCCCTGG
CCGGTGATCCTGCTGTTGCAGCAGGAGCCGGCGCAGGCGCCGGTTGGGGTGGTCGACTGGCTGGCCGCCGAA
CAGCTCTCCGAGGACAGCCTGCGCCGCTGCCTGCGCTACGCGCGCGAGCGCCTGGGCTTGCAGGCGACCCTG
CAACTGCTCGCCGAGCAGGATCCGCTGACCGGCATCGCCAACCGCCAGGGCTTCCAGACCCTGCTCGCGGCG
CGCCTCAGCGAATTCGACGGGCGTGGCCTGGTGCTCGGCCATCTCGACCTGGACAACTTCCGTCACGTCAAC
GATTCCCTCGGCCACCAGGGCGGCGACCGCCTGATCCTGCAGGTGGTCAACCGCCTGCGCGGCTTCATGGAG
AACGGTGACAGCCTGGCGCGCCTGGGCAGCGACGAGTTCGCCCTGCTGCTGGACACCCGTCGCGATCCGCAA
CGCGCCGAGCGGGTCGCCGAACGCATCGTCGAATGCCTCGGCGAGCCCTACTGGATCGATGGCGAGAGCCTC
TTGCTGGGTTGCAGCCTGGGACTCGCCCATGCCCGTGCCGACGAAGGTGCCGATCCGCTGATGTGGCATGCG
CACATCGCCATGCAGCAGGCCAAGAGCCGCCAGGGTTGCACCTTCCATGTCTTCGACGAACGCATCAACCGT
GGCGTGCGCAGCCTAGCCGACCTCGAAGCCGAACTGCGCCGGGCGCTGCGTCGCGACGAGCTGGAGCTGCAC
TACCAGCCGCGACTGTGCCTGGACAGCGGGCGCATCGTCGGCCTGGAGGCGCTGGTGCGCTGGCGCCACGGC
GAGCGGGGCCTGCTCACGCCCAGCGAGTTCGTCCCGCTGGCCGAGGAGAGCGGGCTGATCGTGCCGCTCGGC
TACTGGGTCATCGCCCGCGCCCTGCGCGACATGCAGTGGCTCAACGGGCGCGGCCTGGAGCCGTTGCACATG
GCGGTGAACCTGTCGTTCCGCCAGTTCCAGGACAGCCAGTTGCTGCCGACCCTGCAACGGTTGATCGAAGAG
CACGGCGTCGACGCGCGCTGGCTCGAGTTCGAACTGACCGAGACCGCCGTGATGCGGCGTAGCGACCAGGTG
CTGCAGACCATGCAGGCGCTCGGCCAACTGGGCGTGCGCTTTTCGCTGGACGACTTTGGCACCGGTTTCTCG
TCCTTCGTCCACCTCAATAGCCTGCCGATCACCCTGTTGAAGATCGACCGCAGCTTCGTCGGCGGCATGGAC
CAGCGGGCGGAAAACTTCCAACTGGTGCGGGCGATGATCAACCTGGCGCACAACCTAAACCTGGAAGTGGTT
GCCGAAGGCGTGGAGACCCTGCGCCAGCAGGAGCAGTTGCGCGATTTCGGTTGCGACCAGGTGCAGGGCTAC
TGGATCAGTCCGCCGCTGCCGCTGGCGGAACTGGCGCGTTTCCTGGGCATCGGCGAGCGCTCGGCGCACCGC
GGCCAGCCGCTCGGCAATTGA
Translation:
MSAPAEPLRLLLLADTPDWAPLLGERLRALGPAFSLSIVTTWEGAATLFAAEPRGLLLATPACLPLGTPCPW
PVILLLQQEPAQAPVGVVDWLAAEQLSEDSLRRCLRYARERLGLQATLQLLAEQDPLTGIANRQGFQTLLAA
RLSEFDGRGLVLGHLDLDNFRHVNDSLGHQGGDRLILQVVNRLRGFMENGDSLARLGSDEFALLLDTRRDPQ
RAERVAERIVECLGEPYWIDGESLLLGCSLGLAHARADEGADPLMWHAHIAMQQAKSRQGCTFHVFDERINR
GVRSLADLEAELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHGERGLLTPSEFVPLAEESGLIVPLG
YWVIARALRDMQWLNGRGLEPLHMAVNLSFRQFQDSQLLPTLQRLIEEHGVDARWLEFELTETAVMRRSDQV
LQTMQALGQLGVRFSLDDFGTGFSSFVHLNSLPITLLKIDRSFVGGMDQRAENFQLVRAMINLAHNLNLEVV
AEGVETLRQQEQLRDFGCDQVQGYWISPPLPLAELARFLGIGERSAHRGQPLGN*
AnnotationID:592GeneID:583
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 12:12:46
Gene Name:
Confidence Code:3
GeneProduct:putative signal transduction protein
Cell Localization:()
Synonyms:PA5295
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:putative GGDEF domain/EAL domain protein
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70828.1|AE016727_4 (AE016793) GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 555

 Score =  784 bits (2025), Expect = 0.0
 Identities = 405/543 (74%), Positives = 444/543 (81%)

>gb|AAO53668.1| (AE016856) GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 554

 Score =  734 bits (1895), Expect = 0.0
 Identities = 379/554 (68%), Positives = 426/554 (76%), Gaps = 2/554 (0%)

>gb|AAK25056.1| (AE005972) sensory box/GGDEF family protein [Caulobacter crescentus
           CB15]
          Length = 748

 Score =  316 bits (810), Expect = 2e-85
 Identities = 180/447 (40%), Positives = 271/447 (60%), Gaps = 8/447 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14167




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18311




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34802




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:583_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:583
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
996
                           PA5295_tr
                           translation of PA5295
                           558
                           99.99
                           99.99
                           0
                           2887.0
     

     
     
39337
                           gb|AAG08680.1|AE004942_3
                           (AE004942) hypothetical protein PA5295 [Pseudomonas aeruginosa PAO1]
                           558
                           99.82
                           99.99
                           0
                           2885.0
     

     
     
39338
                           gb|AAN70828.1|AE016727_4
                           (AE016793) GGDEF domain protein [Pseudomonas putida KT2440]
                           567
                           71.42
                           78.65
                           21
                           2013.0
     

     
     
39339
                           gb|AAO53668.1|
                           (AE016856) GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           558
                           67.74
                           76.34
                           4
                           1889.0
     

     
     
39372
                           emb|CAD17964.1|
                           (AL646081) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           692
                           31.93
                           44.21
                           163
                           742.0
     

     






      

          
GC ORFID: 43585How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5295Glimmer Score: 

          
Start: 5499430Stop: 5497754

          
Length: 1677


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5295 translation of PA5295Homolog Bit Score 1116.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4057 (ORF: BLASTX 736.0), t_PA5295 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGTCAGCGCCCGCAGAACCCTTGCGCCTGCTCCTTCTGGCGGATACGCCGGACTGGGCGCCACTGCTAGGT 
GAACGCCTGAGAGCGCTGGGGCCTGCCTTTTCGCTGAGCATCGTCACCACCTGGGAGGGCGCGGCCACCCTG 
TTCGCCGCCGAGCCCCGCGGGCTGCTCCTGGCCACGCCGGCCTGCCTGCCGCTGGGGACTCCCTGCCCCTGG 
CCGGTGATCCTGCTGTTGCAGCAGGAGCCGGCGCAGGCGCCGGTTGGGGTGGTCGACTGGCTGGCCGCCGAA 
CAGCTCTCCGAGGACAGCCTGCGCCGCTGCCTGCGCTACGCGCGCGAGCGCCTGGGCTTGCAGGCGACCCTG 
CAACTGCTCGCCGAGCAGGATCCGCTGACCGGCATCGCCAACCGCCAGGGCTTCCAGACCCTGCTCGCGGCG 
CGCCTCAGCGAATTCGACGGGCGTGGCCTGGTGCTCGGCCATCTCGACCTGGACAACTTCCGTCACGTCAAC 
GATTCCCTCGGCCACCAGGGCGGCGACCGCCTGATCCTGCAGGTGGTCAACCGCCTGCGCGGCTTCATGGAG 
AACGGTGACAGCCTGGCGCGCCTGGGCAGCGACGAGTTCGCCCTGCTGCTGGACACCCGTCGCGATCCGCAA 
CGCGCCGAGCGGGTCGCCGAACGCATCGTCGAATGCCTCGGCGAGCCCTACTGGATCGATGGCGAGAGCCTC 
TTGCTGGGTTGCAGCCTGGGACTCGCCCATGCCCGTGCCGACGAAGGTGCCGATCCGCTGATGTGGCATGCG 
CACATCGCCATGCAGCAGGCCAAGAGCCGCCAGGGTTGCACCTTCCATGTCTTCGACGAACGCATCAACCGT 
GGCGTGCGCAGCCTAGCCGACCTCGAAGCCGAACTGCGCCGGGCGCTGCGTCGCGACGAGCTGGAGCTGCAC 
TACCAGCCGCGACTGTGCCTGGACAGCGGGCGCATCGTCGGCCTGGAGGCGCTGGTGCGCTGGCGCCACGGC 
GAGCGGGGCCTGCTCACGCCCAGCGAGTTCGTCCCGCTGGCCGAGGAGAGCGGGCTGATCGTGCCGCTCGGC 
TACTGGGTCATCGCCCGCGCCCTGCGCGACATGCAGTGGCTCAACGGGCGCGGCCTGGAGCCGTTGCACATG 
GCGGTGAACCTGTCGTTCCGCCAGTTCCAGGACAGCCAGTTGCTGCCGACCCTGCAACGGTTGATCGAAGAG 
CACGGCGTCGACGCGCGCTGGCTCGAGTTCGAACTGACCGAGACCGCCGTGATGCGGCGTAGCGACCAGGTG 
CTGCAGACCATGCAGGCGCTCGGCCAACTGGGCGTGCGCTTTTCGCTGGACGACTTTGGCACCGGTTTCTCG 
TCCTTCGTCCACCTCAATAGCCTGCCGATCACCCTGTTGAAGATCGACCGCAGCTTCGTCGGCGGCATGGAC 
CAGCGGGCGGAAAACTTCCAACTGGTGCGGGCGATGATCAACCTGGCGCACAACCTAAACCTGGAAGTGGTT 
GCCGAAGGCGTGGAGACCCTGCGCCAGCAGGAGCAGTTGCGCGATTTCGGTTGCGACCAGGTGCAGGGCTAC 
TGGATCAGTCCGCCGCTGCCGCTGGCGGAACTGGCGCGTTTCCTGGGCATCGGCGAGCGCTCGGCGCACCGC 
GGCCAGCCGCTCGGCAATTGA