ViewGene

Locus Name:
GeneID:
Location:

GeneID:5807
TrivialName: PA14_40740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40740
PAO1 Ortholog Locus:
Sequence Length:228
Protein Length:75
Start: 3637233
Stop: 3637460
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN67987.1|AE016431_3 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 46/63 (73%), Positives = 55/63 (87%)
Sequence:
ATGGGTATCGAGACGGAAGAACCGAACCAGAAGCCGCCGACCTTCTGGCAGATGCTGCACAGCGTGATGGCT
GCCGCCTTCGGCGTACAGAGCGGGCGAAACCGCGCCCGCGACTTCAGCCACGGCAAGCCCGTGCACTTCATC
ATGCTGGGCCTGCTCTTCACCCTGGTGTTCGTGCTGTTGCTGGCCGGGATCGTGAAACTGGTGCTGAGCCTC
AGCGGCCTGTGA
Translation:
MGIETEEPNQKPPTFWQMLHSVMAAAFGVQSGRNRARDFSHGKPVHFIMLGLLFTLVFVLLLAGIVKLVLSL
SGL*
AnnotationID:5809GeneID:5807
AnnotatorUID: danlee
Modification Date/Time: 2006-05-02 16:04:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ORF present in PAO1 but not annotated.
ReferenceID:11538
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28743
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5807

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
197717 gb|AAN67987.1|AE016431_3 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 81 59.25 74.07 7 250.0
GC ORFID: 48809How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1316677Stop: 1316450
Length: 228
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGGTATCGAGACGGAAGAACCGAACCAGAAGCCGCCGACCTTCTGGCAGATGCTGCACAGCGTGATGGCT
GCCGCCTTCGGCGTACAGAGCGGGCGAAACCGCGCCCGCGACTTCAGCCACGGCAAGCCCGTGCACTTCATC
ATGCTGGGCCTGCTCTTCACCCTGGTGTTCGTGCTGTTGCTGGCCGGGATCGTGAAACTGGTGCTGAGCCTC
AGCGGCCTGTGA