ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5804

TrivialName: PA14_40820

AnnotatorUID: danlee

Modification Date/Time: 2006-05-02 16:04:12

LocusName: PA14_40820

PAO1 Ortholog Locus:

Sequence Length: 876

Protein Length: 291

Start: 3641311

Stop: 3642186

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04628.1|AE004553_5 (AE004553) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 101/264 (38%), Positives = 138/264 (52%), Gaps = 8/264 (3%)

Sequence:

ATGAACCCTCCGCAACCACGCCTCATCGATAACGGCAACGGCCATCCGCTGGCCAGCCATTGGTACCGGCCT
GCCGGGGAGCCGCGCGGCTATCTCCTGATCGTCCCGGCGATGGGAGTGGAACAGCGGTTCTACGCGCCCTTC
GCCGCCTGGCTGGCAGAGCGCGGCTACCTGGCCATCACCTTCGACTACCTGGGCATGGGGCAATCGCGCAAC
GGCTCGCTGCGCGGTCTCGAGGTCGATGTGCTGGGTTGGGCCCGTCATGACTGCAGCGCCATGCTCGCCGCC
GCGCTCGCCGAGAGCGGGAGCAAGCCCCTGTACTGGATCGGCCATAGCCTGGGCGGCCAGATCCTGCCCTTC
GTCGAAGGGCGCGAGCGTATCGAGAGGGTCTTCAGCATCGCCAGCGGCAGTGGCTACTGGAAGGAAAACAGC
CCGCGGTTGCGCAACAAGGTCTGGTTGTTCTGGTACCTCGTCGCGCCCCTGCTGACGCCGCTGCTCGGCTAT
TTTCCCGGGCGCCGCCTGGGCATGGTCGGCGACCTGCCGCGCGGGGTGATCGAACAATGGCGACGCTGGTGC
CTGCATCCGCAGTACGCCCTCGCGGATGGCGAGGCTATCCGCCGCGCCTTCTCCGCCGTACGCACGCCCATC
GTGTCGCTGTCGTTCACCGACGATGAAATGATGTCCCGACGCAGCATCGAGTCGCTGCTGGGCTTCTACCGC
GAAGCGCCGAAAACCGCCTGGCGCATCGCTCCCGAGGAAATCGGCGCCCGCCACATCGGCCATTTCGGCTTC
TTCCGGCCGCAGTTCGCCGAATCGCTCTGGGCGGGCTACCTGTTGCCGGAGCTGGGCTCCGGCAACGCCCTC
AGCCGAGGTTGA

Translation:

MNPPQPRLIDNGNGHPLASHWYRPAGEPRGYLLIVPAMGVEQRFYAPFAAWLAERGYLAITFDYLGMGQSRN
GSLRGLEVDVLGWARHDCSAMLAAALAESGSKPLYWIGHSLGGQILPFVEGRERIERVFSIASGSGYWKENS
PRLRNKVWLFWYLVAPLLTPLLGYFPGRRLGMVGDLPRGVIEQWRRWCLHPQYALADGEAIRRAFSAVRTPI
VSLSFTDDEMMSRRSIESLLGFYREAPKTAWRIAPEEIGARHIGHFGFFRPQFAESLWAGYLLPELGSGNAL
SRG*

AnnotationID:5806 GeneID:5804

AnnotatorUID: danlee

Modification Date/Time: 2006-05-02 16:04:45

Gene Name:

Confidence Code: 3

GeneProduct: putative hydrolase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG4757

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|84327870|ref|ZP_00975884.1|  COG4757: Predicted alpha/beta hydrolase [Pseudomonas aeruginosa 
2192]
 gi|84321296|ref|ZP_00969654.1|  COG4757: Predicted alpha/beta hydrolase [Pseudomonas aeruginosa 
C3719]
Length=291

 Score =  607 bits (1566),  Expect = 1e-172
 Identities = 290/291 (99%), Positives = 291/291 (100%), Gaps = 0/291 (0%)

gi|94416310|ref|ZP_01296139.1|  hypothetical protein PaerP_01001898 [Pseudomonas aeruginosa PA7]
Length=291

 Score =  540 bits (1390),  Expect = 3e-152
 Identities = 258/291 (88%), Positives = 269/291 (92%), Gaps = 0/291 (0%)

Structural Features:

COG4757, Predicted alpha/beta hydrolase [General function prediction only].
             CD-Length = 281 residues,  92.5% aligned
             Score =  170 bits (431), Expect = 2e-43

Genomic Context:

Comment:

PA14_40820 (GeneID5804) is opposite a putative ORF that would be the ortholog of PAO1 PA1834.

ReferenceID:11532

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28738

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37060

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5804_cdd.html

URL:

GC ORFID: `48806`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1312599`	Stop: `1311724`
Length: `876`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAACCCTCCGCAACCACGCCTCATCGATAACGGCAACGGCCATCCGCTGGCCAGCCATTGGTACCGGCCT GCCGGGGAGCCGCGCGGCTATCTCCTGATCGTCCCGGCGATGGGAGTGGAACAGCGGTTCTACGCGCCCTTC GCCGCCTGGCTGGCAGAGCGCGGCTACCTGGCCATCACCTTCGACTACCTGGGCATGGGGCAATCGCGCAAC GGCTCGCTGCGCGGTCTCGAGGTCGATGTGCTGGGTTGGGCCCGTCATGACTGCAGCGCCATGCTCGCCGCC GCGCTCGCCGAGAGCGGGAGCAAGCCCCTGTACTGGATCGGCCATAGCCTGGGCGGCCAGATCCTGCCCTTC GTCGAAGGGCGCGAGCGTATCGAGAGGGTCTTCAGCATCGCCAGCGGCAGTGGCTACTGGAAGGAAAACAGC CCGCGGTTGCGCAACAAGGTCTGGTTGTTCTGGTACCTCGTCGCGCCCCTGCTGACGCCGCTGCTCGGCTAT TTTCCCGGGCGCCGCCTGGGCATGGTCGGCGACCTGCCGCGCGGGGTGATCGAACAATGGCGACGCTGGTGC CTGCATCCGCAGTACGCCCTCGCGGATGGCGAGGCTATCCGCCGCGCCTTCTCCGCCGTACGCACGCCCATC GTGTCGCTGTCGTTCACCGACGATGAAATGATGTCCCGACGCAGCATCGAGTCGCTGCTGGGCTTCTACCGC GAAGCGCCGAAAACCGCCTGGCGCATCGCTCCCGAGGAAATCGGCGCCCGCCACATCGGCCATTTCGGCTTC TTCCGGCCGCAGTTCGCCGAATCGCTCTGGGCGGGCTACCTGTTGCCGGAGCTGGGCTCCGGCAACGCCCTC AGCCGAGGTTGA