ViewGene

Locus Name:
GeneID:
Location:

GeneID:580
TrivialName: PA14_43610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43610
PAO1 Ortholog Locus:PA1617
Sequence Length:1668
Protein Length:555
Start: 3882786
Stop: 3881119
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05006.1|AE004589_9 (AE004589) probable AMP-binding enzyme [Pseudomonas aeruginosa PAO1]
Identities = 552/555 (99%), Positives = 555/555 (100%)
Sequence:
GTGGTCACTGCAAATCGTCTGCCGCTCGAAGTCTTCTTCGAGCGCGAAAAGCGTCATCCGCAACGGCGTTAC
CTGGTGCAGCCCATCGGTGGCGGCCGGGTCGAGGAGCTGAGCTGGGGCGAGGTGGGCGACCAGGCGCGGCGT
GCAGCCGCCTGGTTGCGCAGCCTGGATCTCCCCGCCGGCAGCCGTATCGCGATCATCTCGAAGAACTGTGCG
CACTGGATCGTCACTGACCTGGCGATCTGGATGGCCGGGCACGTTTCCGTCCCCCTCTATCCCAATCTCACC
GCCGAGTCGGCGCGCCAGGTGCTGGAGCATTCCGAGTCGGCGGTGGTCTTCGTCGGCAAGCTCGACGACTGG
CCGGCGATGGCGCCCGGAGTCCCCGAGGGCATACCGACCGTGGCCATGCCGTTGCACCCGGAAGGGCGTTTC
GACCGCCAGTGGAGCGACCTGCAGGCCTGCGCGCCGCTCGAAGGCGACACGCCGACCGCCGCCGAGCAACTC
GCCACCCTGATCTACACCTCTGGAACCACCGGCGTGCCCAAGGGGGTGATGCACAACTTCAGCAGTTTCGCC
TTCGCCGCCAGCCGCGGCGTGGAACTGTTCGGCACTCGCGAAGACGACCGGATGCTCTCCTACCTGCCGCTG
TGCCACGTGGCGGAGCGGATGTTCGTCGAGATGGGGTCGCTCTACGGGGGAACCACGGTGTTCTTCGCCGAA
AGCCTGGACACCTTCCTCGAGGACATGAAGCGTGCGCGGCCGACCCTGCTGTTCGGCGTGCCGCGCATCTGG
ACCAAGTTCCAGATGGGGGTGTATTCGAAGATGCCGGCGCAGAAGCTCGACCGCCTGCTGAAGCTGCCGATC
CTCGGCCGCATCGTCGGTCGCAAGGTGCTCGCCGGGCTAGGCCTGGACGCGGTGCGCTACGCGCTCTGCGGC
GCGGCGCCGGTACCCGAGGCGCTGCTGCTCTGGTATCGCCGCCTGGGCCTGGACGTGCTCGAGGTCTACGGG
ATGACCGAGAACAGCGGCTACTCCCACGTCTGCCGGCCCGGCCGGCAGAAGACCGGCTGGATCGGCCAGAAC
AGCCCCGGCGTCGAGGTACGCATCAGCGACGAGGGCGAGGTGCAGGTGCGTAGCGGCGCAACCATGGTCGGC
TACTACAAGGAGCCGGAGAAGACCGCCGAGGTGCTCACCTCCGACGGTTTCCTGCGCACCGGCGACAAGGGC
GAGCAGGACGCCGACGGCAACCTGCGCCTGACCGGGCGGATGAAGGAAATCTTCAAGACCAGCAAGGGCAAG
TACGTGGCGCCGGCGCCGATCGAGAATCGCCTGGCGGTGCACGATCGCATCGAGCAGGTCTGCGTGGTCGGC
GAGGGCCTCAGCGCGCCGCTGGGGCTCTGCGTGCTCTCCGAGGTCGGTCGCCGGGAGGCCCTCAACGGTACC
CGCGGGGCGCTGGAAAGCAGCCTGCGGGCGCACCTGGAACAGGTCAACGGTGCGCTCGACAAGCACGAGCGC
CTGGTCGGCCTGGTTCTGGTGCAGGAAACCTGGGCGGTGGACAACGGTTTCCTCACGCCGACCTTGAAGATC
AAGCGCAATATGGTGGAAGGTGCCTATGGCTCGCGCTTCCACGAATGGGTGGAACGCCGCGAGGCCGTGCTC
TGGCACGAATGA
Translation:
MVTANRLPLEVFFEREKRHPQRRYLVQPIGGGRVEELSWGEVGDQARRAAAWLRSLDLPAGSRIAIISKNCA
HWIVTDLAIWMAGHVSVPLYPNLTAESARQVLEHSESAVVFVGKLDDWPAMAPGVPEGIPTVAMPLHPEGRF
DRQWSDLQACAPLEGDTPTAAEQLATLIYTSGTTGVPKGVMHNFSSFAFAASRGVELFGTREDDRMLSYLPL
CHVAERMFVEMGSLYGGTTVFFAESLDTFLEDMKRARPTLLFGVPRIWTKFQMGVYSKMPAQKLDRLLKLPI
LGRIVGRKVLAGLGLDAVRYALCGAAPVPEALLLWYRRLGLDVLEVYGMTENSGYSHVCRPGRQKTGWIGQN
SPGVEVRISDEGEVQVRSGATMVGYYKEPEKTAEVLTSDGFLRTGDKGEQDADGNLRLTGRMKEIFKTSKGK
YVAPAPIENRLAVHDRIEQVCVVGEGLSAPLGLCVLSEVGRREALNGTRGALESSLRAHLEQVNGALDKHER
LVGLVLVQETWAVDNGFLTPTLKIKRNMVEGAYGSRFHEWVERREAVLWHE*
AnnotationID:589GeneID:580
AnnotatorUID: diggins
Modification Date/Time: 2005-05-18 12:12:07
Gene Name:
Confidence Code:3
GeneProduct:putative AMP-binding protein
Cell Localization:()
Synonyms:PA1617
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative long-chain acyl-CoA synthetases (AMP-forming)
Functional Category Confidence Code:5
COGs:COG1022,pfam00501,COG0318
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:6.2.1.3
Status:ACTIVE
Pathway:
Homology:
>gb|AAF95484.1| (AE004304) long-chain-fatty-acid--CoA ligase, putative [Vibrio
           cholerae]
          Length = 563

 Score =  424 bits (1090), Expect = e-118
 Identities = 222/552 (40%), Positives = 334/552 (60%), Gaps = 11/552 (1%)

>gb|AAN53440.1|AE015483_6 (AE015483) AMP-binding protein [Shewanella oneidensis MR-1]
          Length = 554

 Score =  423 bits (1087), Expect = e-117
 Identities = 223/542 (41%), Positives = 327/542 (60%), Gaps = 8/542 (1%)

>dbj|BAC60688.1| (AP005081) putative long-chain-fatty-acid-CoA ligase [Vibrio
           parahaemolyticus]
          Length = 568

 Score =  413 bits (1062), Expect = e-114
 Identities = 221/553 (39%), Positives = 331/553 (59%), Gaps = 13/553 (2%)
Structural Features:
COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) 
[Lipid metabolism]
CD-Length = 613 residues,  98.4% aligned
Score =  517 bits (1332), Expect = 2e-147
Identities = 213/605 (35%), Positives = 292/605 (48%), Gaps = 56/605 (9%)

pfam00501, AMP-binding, AMP-binding enzyme.
CD-Length = 412 residues, 100.0% aligned
Score =  269 bits (689), Expect = 6e-73
Identities = 133/438 (30%), Positives = 187/438 (42%), Gaps = 47/438 (10%)

COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 534 residues,  84.5% aligned
Score =  245 bits (627), Expect = 7e-66
Identities = 142/479 (29%), Positives = 206/479 (43%), Gaps = 51/479 (10%)
Genomic Context:
Comment:
ReferenceID:14165
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18305
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37267
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:580_cdd.html
URL:
Homologs By Global Alignment
Gene ID:580

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
992 PA1617_tr translation of PA1617 555 99.45 99.99 0 2892.0
39297 gb|AAG05006.1|AE004589_9 (AE004589) probable AMP-binding enzyme [Pseudomonas aeruginosa PAO1] 555 99.27 99.99 0 2889.0
39299 gb|AAN53440.1|AE015483_6 (AE015483) AMP-binding protein [Shewanella oneidensis MR-1] 570 40.17 58.94 31 1099.0
39298 gb|AAF95484.1| (AE004304) long-chain-fatty-acid--CoA ligase, putative [Vibrio cholerae O1 biovar eltor str. N16961] 571 39.40 59.71 24 1100.0
GC ORFID: 43582How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1617Glimmer Score:
Start: 1071123Stop: 1072790
Length: 1668
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1617 translation of PA1617Homolog Bit Score 1118.0
Other Homologs: t_PA1617 (ORF: GLIMMER)
GC ORF Sequence
GTGGTCACTGCAAATCGTCTGCCGCTCGAAGTCTTCTTCGAGCGCGAAAAGCGTCATCCGCAACGGCGTTAC
CTGGTGCAGCCCATCGGTGGCGGCCGGGTCGAGGAGCTGAGCTGGGGCGAGGTGGGCGACCAGGCGCGGCGT
GCAGCCGCCTGGTTGCGCAGCCTGGATCTCCCCGCCGGCAGCCGTATCGCGATCATCTCGAAGAACTGTGCG
CACTGGATCGTCACTGACCTGGCGATCTGGATGGCCGGGCACGTTTCCGTCCCCCTCTATCCCAATCTCACC
GCCGAGTCGGCGCGCCAGGTGCTGGAGCATTCCGAGTCGGCGGTGGTCTTCGTCGGCAAGCTCGACGACTGG
CCGGCGATGGCGCCCGGAGTCCCCGAGGGCATACCGACCGTGGCCATGCCGTTGCACCCGGAAGGGCGTTTC
GACCGCCAGTGGAGCGACCTGCAGGCCTGCGCGCCGCTCGAAGGCGACACGCCGACCGCCGCCGAGCAACTC
GCCACCCTGATCTACACCTCTGGAACCACCGGCGTGCCCAAGGGGGTGATGCACAACTTCAGCAGTTTCGCC
TTCGCCGCCAGCCGCGGCGTGGAACTGTTCGGCACTCGCGAAGACGACCGGATGCTCTCCTACCTGCCGCTG
TGCCACGTGGCGGAGCGGATGTTCGTCGAGATGGGGTCGCTCTACGGGGGAACCACGGTGTTCTTCGCCGAA
AGCCTGGACACCTTCCTCGAGGACATGAAGCGTGCGCGGCCGACCCTGCTGTTCGGCGTGCCGCGCATCTGG
ACCAAGTTCCAGATGGGGGTGTATTCGAAGATGCCGGCGCAGAAGCTCGACCGCCTGCTGAAGCTGCCGATC
CTCGGCCGCATCGTCGGTCGCAAGGTGCTCGCCGGGCTAGGCCTGGACGCGGTGCGCTACGCGCTCTGCGGC
GCGGCGCCGGTACCCGAGGCGCTGCTGCTCTGGTATCGCCGCCTGGGCCTGGACGTGCTCGAGGTCTACGGG
ATGACCGAGAACAGCGGCTACTCCCACGTCTGCCGGCCCGGCCGGCAGAAGACCGGCTGGATCGGCCAGAAC
AGCCCCGGCGTCGAGGTACGCATCAGCGACGAGGGCGAGGTGCAGGTGCGTAGCGGCGCAACCATGGTCGGC
TACTACAAGGAGCCGGAGAAGACCGCCGAGGTGCTCACCTCCGACGGTTTCCTGCGCACCGGCGACAAGGGC
GAGCAGGACGCCGACGGCAACCTGCGCCTGACCGGGCGGATGAAGGAAATCTTCAAGACCAGCAAGGGCAAG
TACGTGGCGCCGGCGCCGATCGAGAATCGCCTGGCGGTGCACGATCGCATCGAGCAGGTCTGCGTGGTCGGC
GAGGGCCTCAGCGCGCCGCTGGGGCTCTGCGTGCTCTCCGAGGTCGGTCGCCGGGAGGCCCTCAACGGTACC
CGCGGGGCGCTGGAAAGCAGCCTGCGGGCGCACCTGGAACAGGTCAACGGTGCGCTCGACAAGCACGAGCGC
CTGGTCGGCCTGGTTCTGGTGCAGGAAACCTGGGCGGTGGACAACGGTTTCCTCACGCCGACCTTGAAGATC
AAGCGCAATATGGTGGAAGGTGCCTATGGCTCGCGCTTCCACGAATGGGTGGAACGCCGCGAGGCCGTGCTC
TGGCACGAATGA