ViewGene
Locus Name:
GeneID:
Location:

GeneID:58
TrivialName: PA14_55610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55610
PAO1 Ortholog Locus:PA0669
Sequence Length:3096
Protein Length:1031
Start: 4948578
Stop: 4951673
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04058.1|AE004502_1 (AE004502) probable DNA polymerase alpha chain [Pseudomonas aeruginosa PAO1]
Identities = 1022/1031 (99%), Positives = 1025/1031 (99%)
Sequence:
GTGGCTGCATGGCTGGTTCGCATGAGCGCCTACGCCGAACTGCATTGCCTGTCCAACTTCAGTTTCCAGCGC
GGCGCCTCCAGCGCCGCGGAACTCTTCGCCCGTGCAGCGCGCCTGGGCTATCGGGCCCTGGCGATCACCGAC
GAATGCAGCCTGGCCGGTATCGTGCGGGCCTGGCAGGCGGCGCGGGAGCATCAGGTACAACTGATCGTCGGC
AGCGAAATCCGCCTCGAACAGGGGCCCAAGCTGGTCCTCCTGGCGGAGGACCTGGAGGGCTACCAGAACCTC
TGTCGCCTCATCACCCGCGGCCGGCGACAAGCCGACAAGGGCCACTACCGGCTGCTGCGCGAAGACCTGCAA
CAGCCGCTCGCCGGCCTGTTGGCGATCTGGTTGCCGAACGACCATGAGGACGAGCAGGCTGCCTGGCTCCGC
GAACGCTTCCCCCAGCGCCTTTGGCTGGGCGTCGAGTTGCATCGCGGCGCCGATGACGATGCCCGCCTGGAC
AAACTGCTCGCGCTCGCCTCGCATCTCCGGCTACCGCCCGTGGCCTGCGGCGACGTCCACATGCACGCCCGC
GGCAGGCGAGCCCTGCAGGACTGCATGACAGCGATCCGCAACCATCTGCCGGTCAGCGAGGCCGGCGCCTAT
CTCTTCCCCAACGGGGAACGCCACCTGCGTACCCTGGAGGCCCTGCAGGGTATCTACCCGCAAGCCCTGCTG
GCGGAAACCCTGAAGATCGCCGAACGCTGCCGGTTCGATCTGGAACAGCTGAAATACCAGTATCCACGCGAA
TTGGTACCGGCCGGACACGACCCGGCGTCATGGCTCCGCCATCTCACCGAACAGGGCATCGCCAGGCGCTGG
CCGAACGGCGCGAGCGCCAAGGTCCGCAAGCAGATCGAGAGAGAACTCGAGCTGATCGCCGAACTGGGCTAT
GAAAGCTATTTCCTCACCGTGCAGGACATCGTCGCCTTCGCCCGGGGCCGAGAAATCCTTTGCCAGGGCCGC
GGCTCGGCGGCCAATTCAGCAGTGTGCTTCGCCCTCGGCATCACTGAGTTGGACCCGGACCGGACCAACCTG
CTGTTCGAGCGCTTCCTTTCCCGCGAGCGCAACGAACCACCGGACATCGACGTGGATTTCGAACACGAGCGC
CGCGAGGAGGTCATCCAGTACGTTTTCACACGCTACGGACGCCAGCGCGCGGCGCTGACCGCGGTGGTCAGC
ACCTACCACGGCGCCGGCGCGGTGCGCGACGTAGCCAAGGCCCTGGGTCTGCCGCCCGAGCAGGTCGACGTC
CTGGCCAACTGCTGCGGCCGCTGGAGCGACCAGGCCCCCAGCGCCGAACGCCTGGAAGAGGCCGGCTTCGAT
CCGCAGAGTCCGATCCTGCGCCGGGTGCTGGCCCTGACCGGCGAGTTGATCGGTTTTCCGCGCCACCTCTCG
CAGCACCCCGGCGGCTTCGTCATCTCCGAGCAGCCATTGGACACCCTGGTCCCGGTGGAGAATGCCAGCATG
GCCGAACGCACGGTGATCCAGTGGGACAAGGACGATCTCGACGCGGTCGGCCTGCTCAAGGTCGACGTCCTC
GCCCTGGGCATGCTCAGCGCCCTGCGCCGCAGCTTCGACCTGATCCACGCGCTGCGCGGCGGCAAGCGGTTG
AGCATCGCCAGTATCCCGAGCGAAGACCCGGCCACCTACGAAATGATCAGCCGCGCCGATACCATCGGTGTG
TTCCAGATCGAATCGCGCGCACAGATGGCCATGCTGCCACGCCTGCGCCCGCAGAAGTTCTACGACCTGGTG
ATCCAGGTCGCCATCGTCCGCCCAGGGCCGATCCAGGGCGACATGGTGCATCCTTACCTGCGCCGGCGAAAC
GGAGAAGAGCCGGTGGCCTATCCGTCAGCCGAACTGGAGGAAGTCTTCGAACGAACCCTGGGCGTCCCGTTG
TTCCAGGAACAGGTCATGGAACTGGCGATCGTCGCCGCCGACTACACGCCGGGCGAGGCGGACGAACTGCGT
CGTTCGATGGCCGCCTGGAAGCGTCATGGCGGCCTGGAACACCACCGCGAGCGGCTGACCCGGGGCATGCTC
GCCAACGGCTACGAGGCCGACTTCGCAGCGCGCATCTTCGAGCAGATCAAAGGCTTCGGCAGCTACGGTTTC
CCTGAATCCCACGCCGCCAGCTTCGCCCTGCTCACCTACGCCAGCAGTTGGCTGAAACGTCACGAGCCGGCG
GCCTTCGCCTGCGCCTTGATAAACAGTTGGCCGATGGGCTTCTACAGCCCCGACCAGTTGCTCCAGGACGCC
CGCCGCCACGCCCTGCAGACACGCCCGGTGGATGTCCGCCACAGCGGTTGGGATTGCAGCCTGGAGCCGTTC
GGCCAGGCGCAACCGGCCATACGCCTTGGCCTGCGGATGATCCGAGGCTTTCGCGAGGAGGATGCCAGGCGT
ATCGAGCAGGTCCGGGAGGCCCAACCGTTCCTCGACGTGCACGATCTTGGCCGACGCGCCAGGCTCGACGCC
CGGGCCCTGGAGTTGCTGGCCGATGCCGGCGCCCTGCGCGGTCTCGCCGGACACCGGCACAAGGCGCGCTGG
GCCGTCGCCAGCGTCGAGCCGCAATTGCCGCTGTTCGCCGAAGGGACCGTCATCGAAGAGAGCACGGTCAGC
CTGCCACTGCCTTCGCGCGGCGAGGAACTGCTGAGCGATTACGCTCTCCTCGGCACCACCCTCGGCCCGCAT
CCGCTGAAACTCTTGCGTGGACAGCTCAAGGCCCGCCGCTGCCGCGACTCCCGCGAACTGGCGAAACTGGGA
CATGGACGACCGATACGGGTCGCCGGCCTGGTGGTCGGCCGGCAGCGCCCACAGACCGCCAGCGGCATCACC
TTCATCACCCTGGAGGACGAGTTCGGCATGGTCAACGTGGTGGTCCGGCACGACCTTGCCGAACGGCAGAGG
CGGCCATTCCTCGAGTCCCGGCTGCTGCAGGTGGAGGGCATCCTGGAGTCCTCCGGCGAGGTGCGCCACGTC
ATCGCCGGGCGCCTGCATGACCTGAGCCCTCTACTCACCGGCCTGGACGTCCGCAGCCGGGATTTCCATTGA
Translation:
MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQLIVG
SEIRLEQGPKLVLLAEDLEGYQNLCRLITRGRRQADKGHYRLLREDLQQPLAGLLAIWLPNDHEDEQAAWLR
ERFPQRLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAGAY
LFPNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHDPASWLRHLTEQGIARRW
PNGASAKVRKQIERELELIAELGYESYFLTVQDIVAFARGREILCQGRGSAANSAVCFALGITELDPDRTNL
LFERFLSRERNEPPDIDVDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDV
LANCCGRWSDQAPSAERLEEAGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPLDTLVPVENASM
AERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASIPSEDPATYEMISRADTIGV
FQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPL
FQEQVMELAIVAADYTPGEADELRRSMAAWKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGF
PESHAASFALLTYASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLEPF
GQAQPAIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRARLDARALELLADAGALRGLAGHRHKARW
AVASVEPQLPLFAEGTVIEESTVSLPLPSRGEELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLG
HGRPIRVAGLVVGRQRPQTASGITFITLEDEFGMVNVVVRHDLAERQRRPFLESRLLQVEGILESSGEVRHV
IAGRLHDLSPLLTGLDVRSRDFH*
AnnotationID:68GeneID:58
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 13:01:14
Gene Name:
Confidence Code:3
GeneProduct:probable DNA polymerase alpha chain
Cell Localization:(1) Cytoplasmic
Synonyms:PA0669
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication], Bit score: 966,  E value = 0.0






   
Genomic Context:






   
Comment:


















    ReferenceID:14043




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17261




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:58
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
111
                           PA0669_tr
                           translation of PA0669
                           1031
                           99.12
                           99.41
                           0
                           5274.0
     

     
     
12430
                           gb|AAG04058.1|AE004502_1
                           (AE004502) probable DNA polymerase alpha chain [Pseudomonas aeruginosa PAO1]
                           1031
                           99.03
                           99.41
                           0
                           5271.0
     

     
     
12431
                           gb|AAN68727.1|AE016504_10
                           (AE016785) DNA polymerase III, alpha subunit, putative [Pseudomonas putida KT2440]
                           1034
                           72.82
                           81.72
                           4
                           3839.0
     

     
     
12432
                           gb|AAO56295.1|
                           (AE016865) DNA polymerase III, alpha subunit, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           1040
                           71.92
                           81.73
                           18
                           3815.0
     

     
     
12434
                           gb|AAM36071.1|
                           (AE011749) DNA polymerase III alpha chain [Xanthomonas axonopodis pv. citri str. 306]
                           1068
                           57.86
                           70.31
                           40
                           3031.0
     

     






      

          
GC ORFID: 43060How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0669Glimmer Score: 

          
Start: 5329Stop: 2234

          
Length: 3096


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0669 translation of PA0669Homolog Bit Score 2036.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7447 (ORF: BLASTX 1468.0), t_PA0669 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCTGCATGGCTGGTTCGCATGAGCGCCTACGCCGAACTGCATTGCCTGTCCAACTTCAGTTTCCAGCGC 
GGCGCCTCCAGCGCCGCGGAACTCTTCGCCCGTGCAGCGCGCCTGGGCTATCGGGCCCTGGCGATCACCGAC 
GAATGCAGCCTGGCCGGTATCGTGCGGGCCTGGCAGGCGGCGCGGGAGCATCAGGTACAACTGATCGTCGGC 
AGCGAAATCCGCCTCGAACAGGGGCCCAAGCTGGTCCTCCTGGCGGAGGACCTGGAGGGCTACCAGAACCTC 
TGTCGCCTCATCACCCGCGGCCGGCGACAAGCCGACAAGGGCCACTACCGGCTGCTGCGCGAAGACCTGCAA 
CAGCCGCTCGCCGGCCTGTTGGCGATCTGGTTGCCGAACGACCATGAGGACGAGCAGGCTGCCTGGCTCCGC 
GAACGCTTCCCCCAGCGCCTTTGGCTGGGCGTCGAGTTGCATCGCGGCGCCGATGACGATGCCCGCCTGGAC 
AAACTGCTCGCGCTCGCCTCGCATCTCCGGCTACCGCCCGTGGCCTGCGGCGACGTCCACATGCACGCCCGC 
GGCAGGCGAGCCCTGCAGGACTGCATGACAGCGATCCGCAACCATCTGCCGGTCAGCGAGGCCGGCGCCTAT 
CTCTTCCCCAACGGGGAACGCCACCTGCGTACCCTGGAGGCCCTGCAGGGTATCTACCCGCAAGCCCTGCTG 
GCGGAAACCCTGAAGATCGCCGAACGCTGCCGGTTCGATCTGGAACAGCTGAAATACCAGTATCCACGCGAA 
TTGGTACCGGCCGGACACGACCCGGCGTCATGGCTCCGCCATCTCACCGAACAGGGCATCGCCAGGCGCTGG 
CCGAACGGCGCGAGCGCCAAGGTCCGCAAGCAGATCGAGAGAGAACTCGAGCTGATCGCCGAACTGGGCTAT 
GAAAGCTATTTCCTCACCGTGCAGGACATCGTCGCCTTCGCCCGGGGCCGAGAAATCCTTTGCCAGGGCCGC 
GGCTCGGCGGCCAATTCAGCAGTGTGCTTCGCCCTCGGCATCACTGAGTTGGACCCGGACCGGACCAACCTG 
CTGTTCGAGCGCTTCCTTTCCCGCGAGCGCAACGAACCACCGGACATCGACGTGGATTTCGAACACGAGCGC 
CGCGAGGAGGTCATCCAGTACGTTTTCACACGCTACGGACGCCAGCGCGCGGCGCTGACCGCGGTGGTCAGC 
ACCTACCACGGCGCCGGCGCGGTGCGCGACGTAGCCAAGGCCCTGGGTCTGCCGCCCGAGCAGGTCGACGTC 
CTGGCCAACTGCTGCGGCCGCTGGAGCGACCAGGCCCCCAGCGCCGAACGCCTGGAAGAGGCCGGCTTCGAT 
CCGCAGAGTCCGATCCTGCGCCGGGTGCTGGCCCTGACCGGCGAGTTGATCGGTTTTCCGCGCCACCTCTCG 
CAGCACCCCGGCGGCTTCGTCATCTCCGAGCAGCCATTGGACACCCTGGTCCCGGTGGAGAATGCCAGCATG 
GCCGAACGCACGGTGATCCAGTGGGACAAGGACGATCTCGACGCGGTCGGCCTGCTCAAGGTCGACGTCCTC 
GCCCTGGGCATGCTCAGCGCCCTGCGCCGCAGCTTCGACCTGATCCACGCGCTGCGCGGCGGCAAGCGGTTG 
AGCATCGCCAGTATCCCGAGCGAAGACCCGGCCACCTACGAAATGATCAGCCGCGCCGATACCATCGGTGTG 
TTCCAGATCGAATCGCGCGCACAGATGGCCATGCTGCCACGCCTGCGCCCGCAGAAGTTCTACGACCTGGTG 
ATCCAGGTCGCCATCGTCCGCCCAGGGCCGATCCAGGGCGACATGGTGCATCCTTACCTGCGCCGGCGAAAC 
GGAGAAGAGCCGGTGGCCTATCCGTCAGCCGAACTGGAGGAAGTCTTCGAACGAACCCTGGGCGTCCCGTTG 
TTCCAGGAACAGGTCATGGAACTGGCGATCGTCGCCGCCGACTACACGCCGGGCGAGGCGGACGAACTGCGT 
CGTTCGATGGCCGCCTGGAAGCGTCATGGCGGCCTGGAACACCACCGCGAGCGGCTGACCCGGGGCATGCTC 
GCCAACGGCTACGAGGCCGACTTCGCAGCGCGCATCTTCGAGCAGATCAAAGGCTTCGGCAGCTACGGTTTC 
CCTGAATCCCACGCCGCCAGCTTCGCCCTGCTCACCTACGCCAGCAGTTGGCTGAAACGTCACGAGCCGGCG 
GCCTTCGCCTGCGCCTTGATAAACAGTTGGCCGATGGGCTTCTACAGCCCCGACCAGTTGCTCCAGGACGCC 
CGCCGCCACGCCCTGCAGACACGCCCGGTGGATGTCCGCCACAGCGGTTGGGATTGCAGCCTGGAGCCGTTC 
GGCCAGGCGCAACCGGCCATACGCCTTGGCCTGCGGATGATCCGAGGCTTTCGCGAGGAGGATGCCAGGCGT 
ATCGAGCAGGTCCGGGAGGCCCAACCGTTCCTCGACGTGCACGATCTTGGCCGACGCGCCAGGCTCGACGCC 
CGGGCCCTGGAGTTGCTGGCCGATGCCGGCGCCCTGCGCGGTCTCGCCGGACACCGGCACAAGGCGCGCTGG 
GCCGTCGCCAGCGTCGAGCCGCAATTGCCGCTGTTCGCCGAAGGGACCGTCATCGAAGAGAGCACGGTCAGC 
CTGCCACTGCCTTCGCGCGGCGAGGAACTGCTGAGCGATTACGCTCTCCTCGGCACCACCCTCGGCCCGCAT 
CCGCTGAAACTCTTGCGTGGACAGCTCAAGGCCCGCCGCTGCCGCGACTCCCGCGAACTGGCGAAACTGGGA 
CATGGACGACCGATACGGGTCGCCGGCCTGGTGGTCGGCCGGCAGCGCCCACAGACCGCCAGCGGCATCACC 
TTCATCACCCTGGAGGACGAGTTCGGCATGGTCAACGTGGTGGTCCGGCACGACCTTGCCGAACGGCAGAGG 
CGGCCATTCCTCGAGTCCCGGCTGCTGCAGGTGGAGGGCATCCTGGAGTCCTCCGGCGAGGTGCGCCACGTC 
ATCGCCGGGCGCCTGCATGACCTGAGCCCTCTACTCACCGGCCTGGACGTCCGCAGCCGGGATTTCCATTGA