ViewGene
Locus Name:
GeneID:
Location:

GeneID:5798
TrivialName: PA14_41080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41080
PAO1 Ortholog Locus:
Sequence Length:483
Protein Length:160
Start: 3662879
Stop: 3663361
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05202.1|AE004608_1 (AE004608) probable hydroxyacylglutathione hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 159/160 (99%), Positives = 160/160 (100%)
Sequence:
GTGCTCGGCCTGGTCTTCGAGATCTTCCACGTGCCCGGCCATACCCTCGGCCATATCGCCTACTACCACCCG
GCGGAGACGCCGCTGCTGTTCTGCGGCGACACCCTGTTCGCCGCCGGCTGCGGCCGTCTCTTCGAAGGCACC
CCGGCGCAGATGCACCATTCCCTGGCGCGACTGGCCGCGCTGCCGGCCAACACCCGGGTCTACTGCACCCAC
GAGTACACGCTGAGCAACCTGCGCTTCGCGCTGGCGGTGGAGCCCGACAACGCGGCGCTGCGGGAACGCTTC
GAGGAAGCGACCCGGTTGCGCGAACGGGATCGCATCACCCTGCCGTCGGAAATCTCGCTGGAATTGTCGACC
AATCCATTTCTTCGCGTTTCGGAAAATTCTGTTAAGAAAAAAGCCGACCAGCGGAGCGGCCAGCAAAACCGC
ACCCCGGAGGAGGTTTTCGCCGTCCTGAGGGCCTGGAAGGACCAGTTCTGA
Translation:
MLGLVFEIFHVPGHTLGHIAYYHPAETPLLFCGDTLFAAGCGRLFEGTPAQMHHSLARLAALPANTRVYCTH
EYTLSNLRFALAVEPDNAALRERFEEATRLRERDRITLPSEISLELSTNPFLRVSENSVKKKADQRSGQQNR
TPEEVFAVLRAWKDQF*
AnnotationID:5800GeneID:5798
AnnotatorUID: danlee
Modification Date/Time: 2006-03-16 17:05:56
Gene Name:
Confidence Code:3
GeneProduct:putative hydroxyacylglutathione hydrolase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:glyoxalase II
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):carbon compound metabolism
EC Number:3.1.2.6
Status:ACTIVE
Pathway:
Pyruvate metabolism; Glyoxal pathway
Homology:
>gb|AAO57183.1| (AE016869) hydroxyacylglutathione hydrolase, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 259

 Score =  217 bits (553), Expect = 2e-56
 Identities = 108/161 (67%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

>gb|AAN69726.1|AE016608_12 (AE016789) hydroxyacylglutathione hydrolase [Pseudomonas putida
           KT2440]
          Length = 259

 Score =  206 bits (525), Expect = 3e-53
 Identities = 103/162 (63%), Positives = 124/162 (76%), Gaps = 3/162 (1%)

>emb|CAE34644.1| (BX640450) probable hydroxyacylglutathione hydrolase [Bordetella
           bronchiseptica]
          Length = 266

 Score =  173 bits (438), Expect = 4e-43
 Identities = 92/161 (57%), Positives = 107/161 (66%), Gaps = 2/161 (1%)
Structural Features:






   
Genomic Context:






   
Comment:
Lacking first 98 amino acids of PA1813).
Homology: Identities = 159/160 (99%), Positives = 160/160 (99%) in last 160 amino acids of PA1813.


















    ReferenceID:15678




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28726




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5798
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7913
                           PA1813_tr
                           translation of PA1813
                           258
                           62.01
                           62.01
                           98
                           836.0
     

     
     
197659
                           gb|AAG05202.1|AE004608_1
                           (AE004608) probable hydroxyacylglutathione hydrolase [Pseudomonas aeruginosa PAO1]
                           258
                           62.01
                           62.01
                           98
                           836.0
     

     
     
197660
                           gb|AAO57183.1|
                           (AE016869) hydroxyacylglutathione hydrolase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           259
                           42.08
                           47.87
                           99
                           558.0
     

     
     
197661
                           gb|AAN69726.1|AE016608_12
                           (AE016789) hydroxyacylglutathione hydrolase [Pseudomonas putida KT2440]
                           260
                           40.00
                           47.69
                           101
                           532.0
     

     
     
197664
                           emb|CAE43479.1|
                           (BX640420) probable hydroxyacylglutathione hydrolase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           266
                           34.58
                           40.22
                           106
                           438.0
     

     






      

          
GC ORFID: 48800How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1291030Stop: 1290548

          
Length: 483


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1813 translation of PA1813Homolog Bit Score 326.0

          
Other Homologs:  t_PA1813 translation of PA1813 (BLASTP 326), psyr_15may02_Scaffold1_revised_gene632 related to: gi|15597010|ref|NP_250504.1| (NC_002516) probable hydroxyacylglutathione hydrolase [Pseudomonas aeruginosa] pir||G83417 probable hydroxyacylglutathione hydrolase PA1813 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05202.1|AE004608-TRUNCATED- (BLASTP 216)

          
GC ORF Sequence

           
GTGCTCGGCCTGGTCTTCGAGATCTTCCACGTGCCCGGCCATACCCTCGGCCATATCGCCTACTACCACCCG 
GCGGAGACGCCGCTGCTGTTCTGCGGCGACACCCTGTTCGCCGCCGGCTGCGGCCGTCTCTTCGAAGGCACC 
CCGGCGCAGATGCACCATTCCCTGGCGCGACTGGCCGCGCTGCCGGCCAACACCCGGGTCTACTGCACCCAC 
GAGTACACGCTGAGCAACCTGCGCTTCGCGCTGGCGGTGGAGCCCGACAACGCGGCGCTGCGGGAACGCTTC 
GAGGAAGCGACCCGGTTGCGCGAACGGGATCGCATCACCCTGCCGTCGGAAATCTCGCTGGAATTGTCGACC 
AATCCATTTCTTCGCGTTTCGGAAAATTCTGTTAAGAAAAAAGCCGACCAGCGGAGCGGCCAGCAAAACCGC 
ACCCCGGAGGAGGTTTTCGCCGTCCTGAGGGCCTGGAAGGACCAGTTCTGA