ViewGene
Locus Name:
GeneID:
Location:

GeneID:579
TrivialName: PA14_49970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49970
PAO1 Ortholog Locus:PA1113
Sequence Length:1767
Protein Length:588
Start: 4444162
Stop: 4442396
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04502.1|AE004541_7 (AE004541) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 587/588 (99%), Positives = 587/588 (99%)
Sequence:
ATGCCAGCCATTCTCTCCTCCCGCCAACGTATCGCCCTGCGCCTGGCCTGGCGCTTCATGGCGCCTTACCGC
TGGCGCATGCTCGGGGCCCTGGTGGCGTTGCTGTTCACCGCGGCGATCACCCTGTCCCTGGGCCAGGGCATC
CGCCTGCTGGTGGACCAGGGGTTCCTCACCGCCTCGCCCGAATTGCTCAATCGCTACATCCTGCTGTTCTTC
GTGCTGGTGCTCGGCCTGGCCGTAGGCACCTTCGTGCGCTTCTACCTGGTGTCCTGGATCGGCGAGCGCTTC
GTCGCCGATATCCGCAAGCGCGTGTTCGACCACCTGATCGAGTTGCATCCCGGTTTCTACGAAACCAACCGT
AGCTCCGAGATCCAGTCGCGCCTGACCGCCGACACTACGCTGCTGCAGACGGTGATCGGTTCCTCGCTGTCG
ATGGCCCTGCGCAATGCCCTGATGCTGGTCGGCGGGGTGCTGCTGATGTTCGTCACCAACGCCAAGCTGACC
AGCATCGTGGTGCTGGCGTTGCCGCTGGTGATCGCCCCAATCCTGCTGTTCGGCCGCCGCGTGCGCAGCCTG
TCGCGGGAAAGCCAGGACCGGGTGGCCGACGTCGGCAGCTACGTCGGTGAGACCCTCGGTCAGATCAAGACC
GTGCAGGCCTACAACCACCAGGCGCAGGATCGCCAGCGCTTCGCCGGCACCGTCGAGCGCGCCTTCGACACC
GCGCGCAAGCGCATCGCCCAGCGTGCCTGGCTGATCACCGTGGTGATCGTGCTGGTGCTCGGCGCAGTCGGC
ATCATGCTCTGGGTCGGCGGCCGCGACGTGATCGCCGGCAGCATCTCGGCCGGCGAACTGGCCGCGTTCGTC
TTCTACAGCCTGATCGTCGGCATGGCCTTCGGCACCCTCAGCGAGGTGATCGGCGAATTGCAGCGCGCCGCC
GGCGCCGCAGAGCGCATCGCCGAGCTGCTCAGGGCGCGCAGCGAGATCCGCCCGCCAGCGCAACCACGCAAG
CTGGCGGCGCGGGTGAGCGGGAGGATCGAATTGCAGGCGGTGCGCTTCGCCTATCCGACCCGTCCCGAACAC
TGGGCCATCGACGACATCAGCCTGGCCGTCGAACCGGGGGAAACCCTGGCCCTGGTCGGACCTTCCGGTGCC
GGCAAGTCGACCCTGTTCGATCTGCTCCTGCGTTTCTTCGATCCGCAGCAGGGGCGGCTGCTGCTGGACGGA
CAGCCGATCGTCGAACTGGACCCGGCCGACTTGCGCCGCAGCTTTGCCCTGGTGTCGCAGAACCCCGCGCTG
TTCTTCGGCAGCGTCGAGGAAAACATCCGCTACGGCCGTCCGCATGCCAGCGCCGCCGAGGTCGAGGCCGCA
GCGCGTGCCGCGCATGCCCACGAGTTCATCCTGGGTCTGCCGCAGGGCTACGCCACCCACCTGGGCGAGGGC
GGCATCGGCCTGTCCGGCGGCCAGCGCCAGCGCCTGGCGATCGCCCGGGCGTTGCTGGTAGACGCGCCGGTG
TTGCTGCTCGACGAGGCGACCAGCGCCCTGGATGCGGAAAGCGAGCACCTGATCCAGCAGGCCCTGCCAGGC
CTGATGAGCGGACGTACCACCCTGGTGATCGCCCATCGCCTGGCCACGGTGCAGAGCGCCGACCGCATCGCG
GTGATCGACCAGGGGCGGCTGGTGGCGATTGGTAGCCACGCCCGTCTGATCGCCGAGAACCCGCTCTATGCG
CGCCTGGCGGAACTGCAGTTCGCCGTCGGCGGACGCTAG
Translation:
MPAILSSRQRIALRLAWRFMAPYRWRMLGALVALLFTAAITLSLGQGIRLLVDQGFLTASPELLNRYILLFF
VLVLGLAVGTFVRFYLVSWIGERFVADIRKRVFDHLIELHPGFYETNRSSEIQSRLTADTTLLQTVIGSSLS
MALRNALMLVGGVLLMFVTNAKLTSIVVLALPLVIAPILLFGRRVRSLSRESQDRVADVGSYVGETLGQIKT
VQAYNHQAQDRQRFAGTVERAFDTARKRIAQRAWLITVVIVLVLGAVGIMLWVGGRDVIAGSISAGELAAFV
FYSLIVGMAFGTLSEVIGELQRAAGAAERIAELLRARSEIRPPAQPRKLAARVSGRIELQAVRFAYPTRPEH
WAIDDISLAVEPGETLALVGPSGAGKSTLFDLLLRFFDPQQGRLLLDGQPIVELDPADLRRSFALVSQNPAL
FFGSVEENIRYGRPHASAAEVEAAARAAHAHEFILGLPQGYATHLGEGGIGLSGGQRQRLAIARALLVDAPV
LLLDEATSALDAESEHLIQQALPGLMSGRTTLVIAHRLATVQSADRIAVIDQGRLVAIGSHARLIAENPLYA
RLAELQFAVGGR*
AnnotationID:588GeneID:579
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 14:02:50
Gene Name:
Confidence Code:3
GeneProduct:probable ATP-binding/permease fusion ABC transport
Cell Localization:()
Synonyms:PA1113
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1132
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
             CD-Length = 567 residues,  99.6% aligned
             Score =  450 bits (1159), Expect = 2e-127






   
Genomic Context:
Not in association with other genes likely to make up typical procaryotic ABC transport system. 






   
Comment:


















    ReferenceID:1161




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17053




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search






    
Reference Type:Blast (text/plain)







    
Data:PA1113_CDS.cgi


    		




 
URL:

















    ReferenceID:18303




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:579
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
990
                           PA1113_tr
                           translation of PA1113
                           588
                           99.82
                           99.82
                           0
                           2892.0
     

     
     
39267
                           gb|AAG04502.1|AE004541_7
                           (AE004541) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1]
                           588
                           99.82
                           99.82
                           0
                           2892.0
     

     
     
39268
                           dbj|BAC81752.1|
                           (AB079768) hydrophobic compound transport factor [Pseudomonas aeruginosa]
                           588
                           99.48
                           99.65
                           0
                           2879.0
     

     
     
39270
                           gb|AAN67732.1|AE016404_7
                           (AE016782) ABC efflux transporter, permease/ATP-binding protein, putative [Pseudomonas putida KT2440]
                           594
                           77.77
                           86.02
                           13
                           2255.0
     

     
     
39269
                           gb|AAO55539.1|
                           (AE016863) ABC transporter, ATP-binding/permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           589
                           76.23
                           87.94
                           1
                           2267.0
     

     






      

          
GC ORFID: 43581How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1113Glimmer Score: 

          
Start: 509746Stop: 511512

          
Length: 1767


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1113 translation of PA1113Homolog Bit Score 1118.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene838 (ORF: BLASTX 872.0), t_PA1113 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCAGCCATTCTCTCCTCCCGCCAACGTATCGCCCTGCGCCTGGCCTGGCGCTTCATGGCGCCTTACCGC 
TGGCGCATGCTCGGGGCCCTGGTGGCGTTGCTGTTCACCGCGGCGATCACCCTGTCCCTGGGCCAGGGCATC 
CGCCTGCTGGTGGACCAGGGGTTCCTCACCGCCTCGCCCGAATTGCTCAATCGCTACATCCTGCTGTTCTTC 
GTGCTGGTGCTCGGCCTGGCCGTAGGCACCTTCGTGCGCTTCTACCTGGTGTCCTGGATCGGCGAGCGCTTC 
GTCGCCGATATCCGCAAGCGCGTGTTCGACCACCTGATCGAGTTGCATCCCGGTTTCTACGAAACCAACCGT 
AGCTCCGAGATCCAGTCGCGCCTGACCGCCGACACTACGCTGCTGCAGACGGTGATCGGTTCCTCGCTGTCG 
ATGGCCCTGCGCAATGCCCTGATGCTGGTCGGCGGGGTGCTGCTGATGTTCGTCACCAACGCCAAGCTGACC 
AGCATCGTGGTGCTGGCGTTGCCGCTGGTGATCGCCCCAATCCTGCTGTTCGGCCGCCGCGTGCGCAGCCTG 
TCGCGGGAAAGCCAGGACCGGGTGGCCGACGTCGGCAGCTACGTCGGTGAGACCCTCGGTCAGATCAAGACC 
GTGCAGGCCTACAACCACCAGGCGCAGGATCGCCAGCGCTTCGCCGGCACCGTCGAGCGCGCCTTCGACACC 
GCGCGCAAGCGCATCGCCCAGCGTGCCTGGCTGATCACCGTGGTGATCGTGCTGGTGCTCGGCGCAGTCGGC 
ATCATGCTCTGGGTCGGCGGCCGCGACGTGATCGCCGGCAGCATCTCGGCCGGCGAACTGGCCGCGTTCGTC 
TTCTACAGCCTGATCGTCGGCATGGCCTTCGGCACCCTCAGCGAGGTGATCGGCGAATTGCAGCGCGCCGCC 
GGCGCCGCAGAGCGCATCGCCGAGCTGCTCAGGGCGCGCAGCGAGATCCGCCCGCCAGCGCAACCACGCAAG 
CTGGCGGCGCGGGTGAGCGGGAGGATCGAATTGCAGGCGGTGCGCTTCGCCTATCCGACCCGTCCCGAACAC 
TGGGCCATCGACGACATCAGCCTGGCCGTCGAACCGGGGGAAACCCTGGCCCTGGTCGGACCTTCCGGTGCC 
GGCAAGTCGACCCTGTTCGATCTGCTCCTGCGTTTCTTCGATCCGCAGCAGGGGCGGCTGCTGCTGGACGGA 
CAGCCGATCGTCGAACTGGACCCGGCCGACTTGCGCCGCAGCTTTGCCCTGGTGTCGCAGAACCCCGCGCTG 
TTCTTCGGCAGCGTCGAGGAAAACATCCGCTACGGCCGTCCGCATGCCAGCGCCGCCGAGGTCGAGGCCGCA 
GCGCGTGCCGCGCATGCCCACGAGTTCATCCTGGGTCTGCCGCAGGGCTACGCCACCCACCTGGGCGAGGGC 
GGCATCGGCCTGTCCGGCGGCCAGCGCCAGCGCCTGGCGATCGCCCGGGCGTTGCTGGTAGACGCGCCGGTG 
TTGCTGCTCGACGAGGCGACCAGCGCCCTGGATGCGGAAAGCGAGCACCTGATCCAGCAGGCCCTGCCAGGC 
CTGATGAGCGGACGTACCACCCTGGTGATCGCCCATCGCCTGGCCACGGTGCAGAGCGCCGACCGCATCGCG 
GTGATCGACCAGGGGCGGCTGGTGGCGATTGGTAGCCACGCCCGTCTGATCGCCGAGAACCCGCTCTATGCG 
CGCCTGGCGGAACTGCAGTTCGCCGTCGGCGGACGCTAG