ViewGene
Locus Name:
GeneID:
Location:

GeneID:578
TrivialName: PA14_13110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13110
PAO1 Ortholog Locus:PA3924
Sequence Length:1683
Protein Length:560
Start: 1124320
Stop: 1126002
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07311.1|AE004810_3 (AE004810) probable medium-chain acyl-CoA ligase [Pseudomonas aeruginosa PAO1]
Identities = 559/560 (99%), Positives = 560/560 (100%)
Sequence:
ATGCTGAAGACCCGTCTCATCCCGGCCGCCGCCGGCGCTTATCAGTATCCGTTGCTGATCAAGAGCCTGATG
CTTTCCGGCCGTCGTTACGAAAAGAGTCATGAAATCGTCTACCGCGACCAGTTGCGCTACAGCTACGCCACC
TTCAACGAGCGCGTCGCGCGCCTGGCCAACGTACTCAGCGAGGCCGGGGTGAAGGCCGGCGACACGGTGGCG
GTGATGGACTGGGACAGCCATCGCTACCTGGAATGCATGTTCGCCATCCCGATGATCGGGGCGGTGCTGCAT
ACCATCAATATCCGCCTCTCCCCGGAGCAGATCCTCTACACCATGAACCACGCCGAGGATCGCTTCGTGCTG
GTGAACAGCGAGTTCGTCCCGCTCTACCAGGCGGTGGCGGGGCAGCTGGCCACGGTGGAGCGGACCATCCTG
CTCACCGACGGCGCGGAGAAGAGCGCGGAACTGCCCGGCCTGGTCGGCGAATACGAGTCGCTGCTGGCCGCG
GCCAGCCCGCGCTACGACTTCCCCGATTTCGACGAGAACTCTATCGCCACCACCTTCTACACCACCGGCACC
ACCGGCAATCCGAAAGGTGTGTATTTCAGCCACCGGCAACTGGTCCTGCACACCCTGGCGATGGCTTCGACC
ATCGGCAGCCTGGACAGCATCCGCCTGCTCGGTACCAGCGACGTGTACATGCCGATCACCCCGATGTTCCAT
GTCCACGCCTGGGGCACTCCGTACGTGGCGACCATGCTCGGGGTCAAGCAGGTCTATCCCGGGCGTTACGAT
CCGGAACTGCTGGTCGAACTGTGGAAGCGCGAGAAGGTCACCTTCTCCCACTGCGTGCCGACCATCCTGCAG
ATGGTGATGAACGCCAGGGCCGCCCAGGGCGTGGACTTCAAGGGCTGGAAGGTGATCATCGGCGGGAGCGCG
CTGAACCGCTCGCTCTACGAGGCGGCCAAGGCGCGCGGCATCCAGCTGACCGCCGCCTACGGCATGTCGGAG
ACCTGTCCGCTGATTTCCTGCGCCTACCTCAACGACGAACTGCTGGCCGGAAGCGAGGACGAGCGCACCACC
TACCGGATCAAGGCCGGCGTGCCGGTGCCGCTGGTGGATGCGGCGATCATGGACGAACAGGGCCGCTTCCTC
CCGGCCGACGGCGAGTCCCAGGGCGAGCTGGTGTTGCGCTCGCCATGGCTGACCCAGGGGTATTTCCGCGAA
CCCGAGCGCGGCGAGGAGTTGTGGCGCGGCGGCTGGATGCACACCGGCGACGTGGCGACCCTGGACGGCATG
GGCTTCATCGAGATCCGCGACCGCATCAAGGACGTGATCAAGACCGGCGGCGAGTGGCTGTCCTCCCTGGAG
CTGGAAGACCTGATCAGCCGCCATCCGGCGGTACGCGAAGTGGCGGTGGTCGGGGTGCCCGATCCGCAATGG
GGCGAGCGCCCGTTCGCCCTGCTGGTGGTGCGCGAGGGCCAGCAACTGGACGCCCGGGGCCTGAAGGAGCAC
CTCAAGCCTTTCGTCGAGCAGGGCAACATCAACAAGTGGGCGATCCCCTCGCAGATCGCGGTTGTTACCGAT
ATTCCCAAGACCAGCGTCGGCAAGCTGGACAAGAAGCGCATCCGTATCGAGATCGCCCAGTGGCAGGAAGCT
GGCAGCGCCTTCCTGTCGACCGTCTGA
Translation:
MLKTRLIPAAAGAYQYPLLIKSLMLSGRRYEKSHEIVYRDQLRYSYATFNERVARLANVLSEAGVKAGDTVA
VMDWDSHRYLECMFAIPMIGAVLHTINIRLSPEQILYTMNHAEDRFVLVNSEFVPLYQAVAGQLATVERTIL
LTDGAEKSAELPGLVGEYESLLAAASPRYDFPDFDENSIATTFYTTGTTGNPKGVYFSHRQLVLHTLAMAST
IGSLDSIRLLGTSDVYMPITPMFHVHAWGTPYVATMLGVKQVYPGRYDPELLVELWKREKVTFSHCVPTILQ
MVMNARAAQGVDFKGWKVIIGGSALNRSLYEAAKARGIQLTAAYGMSETCPLISCAYLNDELLAGSEDERTT
YRIKAGVPVPLVDAAIMDEQGRFLPADGESQGELVLRSPWLTQGYFREPERGEELWRGGWMHTGDVATLDGM
GFIEIRDRIKDVIKTGGEWLSSLELEDLISRHPAVREVAVVGVPDPQWGERPFALLVVREGQQLDARGLKEH
LKPFVEQGNINKWAIPSQIAVVTDIPKTSVGKLDKKRIRIEIAQWQEAGSAFLSTV*
AnnotationID:587GeneID:578
AnnotatorUID: urbach
Modification Date/Time: 2004-03-22 12:12:47
Gene Name:
Confidence Code:3
GeneProduct:probable medium-chain acyl-CoA ligase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0318,KOG1176,pfam00501,COG0365
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1159




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18301




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:578
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
989
                           PA3924_tr
                           translation of PA3924
                           560
                           99.82
                           99.99
                           0
                           2898.0
     

     
     
39251
                           gb|AAG07311.1|AE004810_3
                           (AE004810) probable medium-chain acyl-CoA ligase [Pseudomonas aeruginosa PAO1]
                           560
                           99.82
                           99.99
                           0
                           2898.0
     

     
     
39252
                           gb|AAN66388.1|AE016266_10
                           (AE016776) medium-chain-fatty-acid CoA ligase [Pseudomonas putida KT2440]
                           560
                           81.96
                           92.14
                           0
                           2477.0
     

     
     
39253
                           gb|AAO54677.1|
                           (AE016859) medium-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv. tomato str. DC3000]
                           560
                           78.57
                           90.71
                           0
                           2393.0
     

     
     
39254
                           gb|AAR33563.1|
                           (AE017207) medium-chain-fatty-acid--CoA ligase [Geobacter sulfurreducens PCA]
                           565
                           54.33
                           70.97
                           20
                           1578.0
     

     






      

          
GC ORFID: 43580How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3924Glimmer Score: 

          
Start: 3829618Stop: 3827936

          
Length: 1683


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3924 translation of PA3924Homolog Bit Score 1120.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4325 (ORF: BLASTX 934.0), t_PA3924 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAAGACCCGTCTCATCCCGGCCGCCGCCGGCGCTTATCAGTATCCGTTGCTGATCAAGAGCCTGATG 
CTTTCCGGCCGTCGTTACGAAAAGAGTCATGAAATCGTCTACCGCGACCAGTTGCGCTACAGCTACGCCACC 
TTCAACGAGCGCGTCGCGCGCCTGGCCAACGTACTCAGCGAGGCCGGGGTGAAGGCCGGCGACACGGTGGCG 
GTGATGGACTGGGACAGCCATCGCTACCTGGAATGCATGTTCGCCATCCCGATGATCGGGGCGGTGCTGCAT 
ACCATCAATATCCGCCTCTCCCCGGAGCAGATCCTCTACACCATGAACCACGCCGAGGATCGCTTCGTGCTG 
GTGAACAGCGAGTTCGTCCCGCTCTACCAGGCGGTGGCGGGGCAGCTGGCCACGGTGGAGCGGACCATCCTG 
CTCACCGACGGCGCGGAGAAGAGCGCGGAACTGCCCGGCCTGGTCGGCGAATACGAGTCGCTGCTGGCCGCG 
GCCAGCCCGCGCTACGACTTCCCCGATTTCGACGAGAACTCTATCGCCACCACCTTCTACACCACCGGCACC 
ACCGGCAATCCGAAAGGTGTGTATTTCAGCCACCGGCAACTGGTCCTGCACACCCTGGCGATGGCTTCGACC 
ATCGGCAGCCTGGACAGCATCCGCCTGCTCGGTACCAGCGACGTGTACATGCCGATCACCCCGATGTTCCAT 
GTCCACGCCTGGGGCACTCCGTACGTGGCGACCATGCTCGGGGTCAAGCAGGTCTATCCCGGGCGTTACGAT 
CCGGAACTGCTGGTCGAACTGTGGAAGCGCGAGAAGGTCACCTTCTCCCACTGCGTGCCGACCATCCTGCAG 
ATGGTGATGAACGCCAGGGCCGCCCAGGGCGTGGACTTCAAGGGCTGGAAGGTGATCATCGGCGGGAGCGCG 
CTGAACCGCTCGCTCTACGAGGCGGCCAAGGCGCGCGGCATCCAGCTGACCGCCGCCTACGGCATGTCGGAG 
ACCTGTCCGCTGATTTCCTGCGCCTACCTCAACGACGAACTGCTGGCCGGAAGCGAGGACGAGCGCACCACC 
TACCGGATCAAGGCCGGCGTGCCGGTGCCGCTGGTGGATGCGGCGATCATGGACGAACAGGGCCGCTTCCTC 
CCGGCCGACGGCGAGTCCCAGGGCGAGCTGGTGTTGCGCTCGCCATGGCTGACCCAGGGGTATTTCCGCGAA 
CCCGAGCGCGGCGAGGAGTTGTGGCGCGGCGGCTGGATGCACACCGGCGACGTGGCGACCCTGGACGGCATG 
GGCTTCATCGAGATCCGCGACCGCATCAAGGACGTGATCAAGACCGGCGGCGAGTGGCTGTCCTCCCTGGAG 
CTGGAAGACCTGATCAGCCGCCATCCGGCGGTACGCGAAGTGGCGGTGGTCGGGGTGCCCGATCCGCAATGG 
GGCGAGCGCCCGTTCGCCCTGCTGGTGGTGCGCGAGGGCCAGCAACTGGACGCCCGGGGCCTGAAGGAGCAC 
CTCAAGCCTTTCGTCGAGCAGGGCAACATCAACAAGTGGGCGATCCCCTCGCAGATCGCGGTTGTTACCGAT 
ATTCCCAAGACCAGCGTCGGCAAGCTGGACAAGAAGCGCATCCGTATCGAGATCGCCCAGTGGCAGGAAGCT 
GGCAGCGCCTTCCTGTCGACCGTCTGA