ViewGene
Locus Name:
GeneID:
Location:

GeneID:577
TrivialName: PA14_51900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51900
PAO1 Ortholog Locus:PA0956
Sequence Length:1716
Protein Length:571
Start: 4608130
Stop: 4609845
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04345.1|AE004529_11 (AE004529) prolyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
Identities = 568/571 (99%), Positives = 570/571 (99%)
Sequence:
ATGCGTACCAGTCAGTATCTGCTTTCCACGCTCAAAGAAACCCCCGCCGACGCGGTGGTAATCAGCCATCAA
CTGCTGCTTCGCGCCGGCATGATCCGCCGCCTGGCCTCGGGTCTCTACACCTGGCTGCCAATGGGCCTGCGG
GTACTGCGCAAGGTCGAGACCATCGTCCGCGAGGAAATGAACGCTGCCGGCGCCCTGGAAGTGCTGATGCCG
GCGGTGCAGCCGGCCGAGCTGTGGCAGGAGTCGGGGCGCTGGGAGCAATACGGCCCTGAGCTGCTGCGCCTG
AAGGACCGCCACGAGCGCGAATTCTGCGTAGGCCCGACCCACGAAGAAGTGATCACCGACCTCGCGCGCAAC
GAGCTGAACAGCTACAAGCAACTGCCGATCAACTTCTATCAGATCCAGACCAAGTTCCGCGATGAGATCCGC
CCGCGCTTCGGCCTGATGCGCGGACGCGAATTCATCATGAAGGATGCCTATTCCTTCCACCTGAGCCAGGAC
TCGCTGCAGCAGACCTACGACGGGATGTACCAGGCGTACAGCAAGATATTCTCCCGCCTCGGCCTGGATTTC
CGTCCCGTGCAAGCCGACAACGGCTCCATCGGCGGCAGCGGCTCCCATGAGTTCCACGTGCTGGCCAACTCC
GGCGAGGACGATATCGTCTTCAGCGACAGCTCCGACTACGCCGCGAACATCGAGAAGGCCGAAGCCGTGCCG
CGCGAGAGCGCCCGCGGCAGCGCCACCGAGGACATGCGCCTGGTCGACACGCCCAACACCAAGACCATCACG
GCCCTGGTGGACGGCTTCCAGCTACCGATCGAGAAAACCATCAAGACCCTGGTGGTGCATGGCGCCGAAGAA
GGCACCCTGGTCGCCCTGATCGTCCGCGGCGATCACGAACTCAACGAAATCAAGGCCGCCAACCAGCCGCTG
GTCGCCAGCCCGCTGGTATTCGCGTCGGAGGCCGAGATCCGTGCCGCCATCGGCGCCGGCCCCGGCTCGCTG
GGCCCGGTCAACCTGCCGATCGCCTGCATCGTCGACCGCTCCGTCGCCCTGATGAGCGATTTCGCCGCTGGC
GCCAACATCGAGGACAAGCACTACTTCGGCGTGAACTGGGAGCGCGACCTGCCGCTGCCCGAGGTCGCCGAC
CTGCGCAATGTCGTCGAAGGCGACCCCAGCCCGGACGGCAAGGGCACCCTGGTGATCAAGCGCGGCATCGAG
GTCGGTCATATCTTCCAGCTTGGTACCAAGTACAGCGAAGCGATGAAGCTGAACGTCCTGAGCGAACAGGGC
AAGCCGGTCAACCTGATCATGGGCTGCTACGGCATCGGCGTATCCCGCGTGGTCGCCGCCGCCATCGAACAG
AACCATGACGAGCGTGGCATTCTCTGGCCAAGCGCACTGGCGCCGTTCCAGATCGCCCTGGTACCGCTGAAG
TACGAAACCGAGAGCGTCAAGCAGGCGACCGACAAGCTCTATGCCGAGCTGACCGCAGCCGGTTTCGAAGTG
CTGCTGGACGATCGCGACAAGAAGACCAGCCCCGGGGTGAAATTCGCCGACATGGAGCTGATCGGCATTCCC
CACCGCATCGTGATCAGCGACCGCGGCCTCAACGAAGGCGTCCTGGAATACAAGGGCCGCCGTGACAGCGAG
TCGCAGAACCTGCCGATCGGCGAACTGATGTCGTTCATCACCGAAAAACTCAGCCGCTGA
Translation:
MRTSQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREEMNAAGALEVLMP
AVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGPTHEEVITDLARNELNSYKQLPINFYQIQTKFRDEIR
PRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQAYSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANS
GEDDIVFSDSSDYAANIEKAEAVPRESARGSATEDMRLVDTPNTKTITALVDGFQLPIEKTIKTLVVHGAEE
GTLVALIVRGDHELNEIKAANQPLVASPLVFASEAEIRAAIGAGPGSLGPVNLPIACIVDRSVALMSDFAAG
ANIEDKHYFGVNWERDLPLPEVADLRNVVEGDPSPDGKGTLVIKRGIEVGHIFQLGTKYSEAMKLNVLSEQG
KPVNLIMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPFQIALVPLKYETESVKQATDKLYAELTAAGFEV
LLDDRDKKTSPGVKFADMELIGIPHRIVISDRGLNEGVLEYKGRRDSESQNLPIGELMSFITEKLSR*
AnnotationID:586GeneID:577
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 15:03:59
Gene Name:proS
Confidence Code:2
GeneProduct:prolyl-tRNA synthetase
Cell Localization:()
Synonyms:PA0956
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00779, COG0442
Secondary Functional Category(ies):Amino acid biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS) class II 
core catalytic domain.  Score: 617, 1e-177
COG0442, ProS, Prolyl-tRNA synthetase. Score: 611, 1e-175






   
Genomic Context:






   
Comment:


















    ReferenceID:1157




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18299




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:577
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
988
                           PA0956_tr
                           translation of PA0956
                           571
                           99.47
                           99.82
                           0
                           2898.0
     

     
     
39132
                           gb|AAG04345.1|AE004529_11
                           (AE004529) prolyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
                           571
                           99.47
                           99.82
                           0
                           2898.0
     

     
     
39133
                           gb|AAO57447.1|
                           (AE016870) prolyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000]
                           571
                           81.26
                           89.84
                           0
                           2449.0
     

     
     
39134
                           gb|AAN66829.1|AE016311_9
                           (AE016778) prolyl-tRNA synthetase [Pseudomonas putida KT2440]
                           571
                           80.38
                           90.54
                           0
                           2427.0
     

     
     
39136
                           gb|AAP15727.1|
                           (AE016978) proline tRNA synthetase [Shigella flexneri 2a str. 2457T]
                           574
                           71.08
                           83.62
                           5
                           2131.0
     

     






      

          
GC ORFID: 43579How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0956Glimmer Score: 

          
Start: 345777Stop: 344062

          
Length: 1716


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0956 translation of PA0956Homolog Bit Score 1120.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4763 (ORF: BLASTX 944.0), t_PA0956 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTACCAGTCAGTATCTGCTTTCCACGCTCAAAGAAACCCCCGCCGACGCGGTGGTAATCAGCCATCAA 
CTGCTGCTTCGCGCCGGCATGATCCGCCGCCTGGCCTCGGGTCTCTACACCTGGCTGCCAATGGGCCTGCGG 
GTACTGCGCAAGGTCGAGACCATCGTCCGCGAGGAAATGAACGCTGCCGGCGCCCTGGAAGTGCTGATGCCG 
GCGGTGCAGCCGGCCGAGCTGTGGCAGGAGTCGGGGCGCTGGGAGCAATACGGCCCTGAGCTGCTGCGCCTG 
AAGGACCGCCACGAGCGCGAATTCTGCGTAGGCCCGACCCACGAAGAAGTGATCACCGACCTCGCGCGCAAC 
GAGCTGAACAGCTACAAGCAACTGCCGATCAACTTCTATCAGATCCAGACCAAGTTCCGCGATGAGATCCGC 
CCGCGCTTCGGCCTGATGCGCGGACGCGAATTCATCATGAAGGATGCCTATTCCTTCCACCTGAGCCAGGAC 
TCGCTGCAGCAGACCTACGACGGGATGTACCAGGCGTACAGCAAGATATTCTCCCGCCTCGGCCTGGATTTC 
CGTCCCGTGCAAGCCGACAACGGCTCCATCGGCGGCAGCGGCTCCCATGAGTTCCACGTGCTGGCCAACTCC 
GGCGAGGACGATATCGTCTTCAGCGACAGCTCCGACTACGCCGCGAACATCGAGAAGGCCGAAGCCGTGCCG 
CGCGAGAGCGCCCGCGGCAGCGCCACCGAGGACATGCGCCTGGTCGACACGCCCAACACCAAGACCATCACG 
GCCCTGGTGGACGGCTTCCAGCTACCGATCGAGAAAACCATCAAGACCCTGGTGGTGCATGGCGCCGAAGAA 
GGCACCCTGGTCGCCCTGATCGTCCGCGGCGATCACGAACTCAACGAAATCAAGGCCGCCAACCAGCCGCTG 
GTCGCCAGCCCGCTGGTATTCGCGTCGGAGGCCGAGATCCGTGCCGCCATCGGCGCCGGCCCCGGCTCGCTG 
GGCCCGGTCAACCTGCCGATCGCCTGCATCGTCGACCGCTCCGTCGCCCTGATGAGCGATTTCGCCGCTGGC 
GCCAACATCGAGGACAAGCACTACTTCGGCGTGAACTGGGAGCGCGACCTGCCGCTGCCCGAGGTCGCCGAC 
CTGCGCAATGTCGTCGAAGGCGACCCCAGCCCGGACGGCAAGGGCACCCTGGTGATCAAGCGCGGCATCGAG 
GTCGGTCATATCTTCCAGCTTGGTACCAAGTACAGCGAAGCGATGAAGCTGAACGTCCTGAGCGAACAGGGC 
AAGCCGGTCAACCTGATCATGGGCTGCTACGGCATCGGCGTATCCCGCGTGGTCGCCGCCGCCATCGAACAG 
AACCATGACGAGCGTGGCATTCTCTGGCCAAGCGCACTGGCGCCGTTCCAGATCGCCCTGGTACCGCTGAAG 
TACGAAACCGAGAGCGTCAAGCAGGCGACCGACAAGCTCTATGCCGAGCTGACCGCAGCCGGTTTCGAAGTG 
CTGCTGGACGATCGCGACAAGAAGACCAGCCCCGGGGTGAAATTCGCCGACATGGAGCTGATCGGCATTCCC 
CACCGCATCGTGATCAGCGACCGCGGCCTCAACGAAGGCGTCCTGGAATACAAGGGCCGCCGTGACAGCGAG 
TCGCAGAACCTGCCGATCGGCGAACTGATGTCGTTCATCACCGAAAAACTCAGCCGCTGA