ViewGene
Locus Name:
GeneID:
Location:

GeneID:5758
TrivialName: PA14_43090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43090
PAO1 Ortholog Locus:
Sequence Length:741
Protein Length:246
Start: 3834632
Stop: 3835372
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO58859.1| (AE016875) hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 117/221 (52%), Positives = 146/221 (66%)
Sequence:
GTGACCTCTGACGCCCTCTCCCCGCGAACCTGGCTGGCCCGACATCCGCTGCAGGCAGGCGAATGCCTGTAC
GCGATCTTCGGCAGCGCCAGCGATGCCGCGCCCCTGCAAGCCTACTACCGGAAAGACAGCCCACCCCTACCG
CTCCCTCTCTGGAACGGTACGCCATATGCCGACTGGCAACCGGTGATGCCCTACCTCGCGAAGCTGTCCCCC
AGCAGCGTATTCCTCGATTGGGCTGCCAGCGAAAAGTCTCGCGACTGGGGTTGGCTGGCAGTTTCCACCTGG
TCGACAGACGCAATCCTAGAGCACCTACGCAGCCTCACCCAGGTACGCATGCCGGATGGCAGCGAAGTGTTC
TTCCGTTTCTGGGACGGCCGTCACCTGCTACCGATACTCGCCCACCTCGGCGAGAAAGCGCACGAAGTACTG
CCGATGTTCGGCCGTTACCTGATCAATGGCAAAGCACTCGAAACCGGCCAGGGCCATCCCCATGCCGCCCGT
CCCTACCCCTGGTGGGAGGTTCCGCGGGCACTGGTCGACACGCTGCATGCCGACGACCCGACTACCGCTATC
GACAACCTGCTGCAGTGGCTGCGCGAGAACCACGCAGATCTGTACTTCGCCTATCCCGAGCGAAGTCTGCAA
TTGCGCGCCAGACGCCTCATCGCGAAAGCCGTCGCCATGGATGAGATCGGCGGCCTGTTGTTGAACCAGTTG
GAAAAGGACCTGACCCCATGA
Translation:
MTSDALSPRTWLARHPLQAGECLYAIFGSASDAAPLQAYYRKDSPPLPLPLWNGTPYADWQPVMPYLAKLSP
SSVFLDWAASEKSRDWGWLAVSTWSTDAILEHLRSLTQVRMPDGSEVFFRFWDGRHLLPILAHLGEKAHEVL
PMFGRYLINGKALETGQGHPHAARPYPWWEVPRALVDTLHADDPTTAIDNLLQWLRENHADLYFAYPERSLQ
LRARRLIAKAVAMDEIGGLLLNQLEKDLTP*
AnnotationID:5760GeneID:5758
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 13:01:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|48732961|ref|ZP_00266704.1|  hypothetical protein Pflu02001014 [Pseudomonas fluorescens PfO-1]
     Length=242
     Score =  269 bits (688),  Expect = 5e-71
     Identities = 124/240 (51%), Positives = 168/240 (70%), Gaps = 1/240 (0%)

gi|28855800|gb|AAO58859.1|  hypothetical protein PSPTO5437 [Pseudomonas syringae pv. tomato str. DC3000]
     Length=227
     Score =  251 bits (641),  Expect = 1e-65
     Identities = 117/221 (52%), Positives = 146/221 (66%), Gaps = 0/221 (0%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15639




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28647




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5758
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197539
                           gb|AAO58859.1|
                           (AE016875) hypothetical protein PSPTO5437 [Pseudomonas syringae pv. tomato str. DC3000]
                           248
                           47.58
                           59.67
                           23
                           634.0
     

     






      

          
GC ORFID: 48760How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1119277Stop: 1118537

          
Length: 741


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGACCTCTGACGCCCTCTCCCCGCGAACCTGGCTGGCCCGACATCCGCTGCAGGCAGGCGAATGCCTGTAC 
GCGATCTTCGGCAGCGCCAGCGATGCCGCGCCCCTGCAAGCCTACTACCGGAAAGACAGCCCACCCCTACCG 
CTCCCTCTCTGGAACGGTACGCCATATGCCGACTGGCAACCGGTGATGCCCTACCTCGCGAAGCTGTCCCCC 
AGCAGCGTATTCCTCGATTGGGCTGCCAGCGAAAAGTCTCGCGACTGGGGTTGGCTGGCAGTTTCCACCTGG 
TCGACAGACGCAATCCTAGAGCACCTACGCAGCCTCACCCAGGTACGCATGCCGGATGGCAGCGAAGTGTTC 
TTCCGTTTCTGGGACGGCCGTCACCTGCTACCGATACTCGCCCACCTCGGCGAGAAAGCGCACGAAGTACTG 
CCGATGTTCGGCCGTTACCTGATCAATGGCAAAGCACTCGAAACCGGCCAGGGCCATCCCCATGCCGCCCGT 
CCCTACCCCTGGTGGGAGGTTCCGCGGGCACTGGTCGACACGCTGCATGCCGACGACCCGACTACCGCTATC 
GACAACCTGCTGCAGTGGCTGCGCGAGAACCACGCAGATCTGTACTTCGCCTATCCCGAGCGAAGTCTGCAA 
TTGCGCGCCAGACGCCTCATCGCGAAAGCCGTCGCCATGGATGAGATCGGCGGCCTGTTGTTGAACCAGTTG 
GAAAAGGACCTGACCCCATGA