ViewGene
Locus Name:
GeneID:
Location:

GeneID:5754
TrivialName: PA14_43250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43250
PAO1 Ortholog Locus:
Sequence Length:348
Protein Length:115
Start: 3853781
Stop: 3854128
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAE32904.1| (BX640444) conserved hypothetical protein [Bordetella bronchiseptica]
Identities = 66/115 (57%), Positives = 83/115 (72%)
Sequence:
ATGAACTATCGAGGAAGCTGCCACTGCGGAACCATCGCCTACGAAGTCGAAGGCGACCTCGACCAGGTGATC
CAGTGCAACTGTTCACTGTGCAGCCGGCGCGGCTGGCTGCTGTGGTTCGTCCCGCGCGACCGTCTGGCGCTG
AAGACGCCGGCCAGCGCGATGCACACCTACACCTTCAACACCCATCGCCTGCAGCATCACTTCTGCCCCACC
TGCGGCTGCGCGCCGTTCAGCGAAGGCATAGGCCCGGACGGCCAGGCGATGGCCGCGGTCAACGCGCGCTGC
CTGGAGGACATCGACGCCAACGCGCTCCCGGTACAGCACTACGATGGCCGCAACGCCTGA
Translation:
MNYRGSCHCGTIAYEVEGDLDQVIQCNCSLCSRRGWLLWFVPRDRLALKTPASAMHTYTFNTHRLQHHFCPT
CGCAPFSEGIGPDGQAMAAVNARCLEDIDANALPVQHYDGRNA*
AnnotationID:5756GeneID:5754
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 01:01:11
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84327963|ref|ZP_00975974.1|  COG3791: Uncharacterized conserved protein [Pseudomonas aeruginosa 
2192]
 gi|84321607|ref|ZP_00969962.1|  COG3791: Uncharacterized conserved protein [Pseudomonas aeruginosa 
C3719]
Length=115

 Score =  253 bits (647),  Expect = 1e-66
 Identities = 114/115 (99%), Positives = 115/115 (100%), Gaps = 0/115 (0%)

gi|94412986|ref|ZP_01292881.1|  hypothetical protein PaerP_01005205 [Pseudomonas aeruginosa PA7]
Length=115

 Score =  231 bits (590),  Expect = 5e-60
 Identities = 102/115 (88%), Positives = 110/115 (95%), Gaps = 0/115 (0%)

gi|83649178|ref|YP_437613.1|  hypothetical protein HCH_06549 [Hahella chejuensis KCTC 2396]
 gi|83637221|gb|ABC33188.1|  uncharacterized conserved protein [Hahella chejuensis KCTC 2396]
Length=115

 Score =  173 bits (438),  Expect = 2e-42
 Identities = 75/114 (65%), Positives = 90/114 (78%), Gaps = 0/114 (0%)








 
Structural Features:
COG3791, Uncharacterized conserved protein [Function unknown].
E-value 4e-19






   
Genomic Context:






   
Comment:


















    ReferenceID:11445




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28639




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37214




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5754_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5754
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197526
                           emb|CAE32904.1|
                           (BX640444) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           115
                           57.39
                           72.17
                           0
                           391.0
     

     
     
197527
                           emb|CAE36646.1|
                           (BX640427) conserved hypothetical protein [Bordetella parapertussis]
                           115
                           57.39
                           72.17
                           0
                           391.0
     

     
     
197528
                           emb|CAD17093.1|
                           (AL646074) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           115
                           56.52
                           71.30
                           0
                           386.0
     

     
     
197529
                           emb|CAE42413.1|
                           (BX640417) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           115
                           56.52
                           71.30
                           0
                           384.0
     

     
     
197530
                           gb|AAL43392.1|
                           (AE009188) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           118
                           44.06
                           58.47
                           3
                           299.0
     

     






      

          
GC ORFID: 48756How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1100128Stop: 1099781

          
Length: 348


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAACTATCGAGGAAGCTGCCACTGCGGAACCATCGCCTACGAAGTCGAAGGCGACCTCGACCAGGTGATC 
CAGTGCAACTGTTCACTGTGCAGCCGGCGCGGCTGGCTGCTGTGGTTCGTCCCGCGCGACCGTCTGGCGCTG 
AAGACGCCGGCCAGCGCGATGCACACCTACACCTTCAACACCCATCGCCTGCAGCATCACTTCTGCCCCACC 
TGCGGCTGCGCGCCGTTCAGCGAAGGCATAGGCCCGGACGGCCAGGCGATGGCCGCGGTCAACGCGCGCTGC 
CTGGAGGACATCGACGCCAACGCGCTCCCGGTACAGCACTACGATGGCCGCAACGCCTGA