ViewGene
Locus Name:
GeneID:
Location:

GeneID:574
TrivialName: PA14_10550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10550
PAO1 Ortholog Locus:PA4130
Sequence Length:1674
Protein Length:557
Start: 908648
Stop: 910321
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07517.1|AE004829_7 (AE004829) probable sulfite or nitrite reductase [Pseudomonas aeruginosa PAO1]
Identities = 553/557 (99%), Positives = 555/557 (99%)
Sequence:
ATGTACCAGTACGACGAATACGACCAGGCGCTGGTGAGCGAGCGGGTGGCGCAGTTCCGCGACCAGATCGCC
CGCCGCCTCGACGGCGAACTGAGCGAGGAGGAGTTCCTCCCGCTGCGCCTGCAGAACGGCCTGTACCTGCAG
AAGCACGCCTACATGCTGCGCGTGGCGATTCCCTACGGCACCCTCTCGTCGCCGCAACTGCGCGCCTTGGCG
CACGTCGCCCGGCACTACGACCGCGGCTACGGGCACTTCACCACGCGGCAGAACATCCAGTTCAACTGGATC
GAACTGGAGCAGGTCGGCGATATCCTCGAACACCTCGCCGGCGCGCAGATGCATGCGATCCAGACCTCCGGC
AACTGCGTGCGCAACATCACCACCGAAGCCTTCGCCGGGGTCGCCGCGGACGAATGGACCGACCCCCGGCCG
CTGGCCGAGATCCTGCGCCAGTGGTCGACGGTGAACCCGGAGTTCCTGTTCCTCCCGCGCAAGTTCAAGATC
GCCCTCAGTTCGGCGGTGGAAGACCGCGCCGCGGTGCAGATGCACGACATCGGCCTGTACCTTTACCGCCAC
CCCGACGCCGGCGAGTTGCGCCTGCGGGTCCTGGTCGGCGGCGGCCTGGGACGCACGCCGATGCTCGGCCAG
GTGATCCGCGACGACCTGCCCTGGCAGCACCTGTTGTCCTACGTCGAGGCGATCCTGCGGGTCTACAACCGC
TACGGCCGGCGCGACAACAAGTACAAGGCGCGGATCAAGATCCTGGTCAAGGCGCTGGGCATCGAGGCTTTC
GCCCGCGAGGTGGAGGAAGAGTGGCAGCACCTGCGCGACGGCCCGGCACAACTGACTGCCGAGGAGTGCCAG
CGGGTCGCCGAGCGCTTCGTATTGCCGCGCTACCTGCCGCCGGCCGGCGGCGAGCTGGCCTACGGCAGCGCC
CGTGCGGTCGATCCGGCCTTCGCCCGCTGGGCCTCGCGCAACGTCCAGGCGCACAAGGTGCCGGGCTACGCC
TCGGTGGTGCTGTCGACCAAGCCCGGCGCCAGCGCGCCGCCGGGCGACGTCACCGCGGAGCAGATGGAACGC
GTCGCCGACTGGGCCGAGCGCTACGGTTTCGGCGAGATCCGCGTGGCCCACGAACAGAACCTGGTGCTCCCC
GACGTGCGCCTGGAGAACCTCCACGCGCTGTGGCGCGAGGCCTGCGCAGCCGGCCTCGGCACGCCTAACCAG
GGCCTGCTCAGCGACATCATCGCCTGTCCCGGCGGCGACTACTGCGCGCTGGCCAACGCCAAGTCGATCCCC
ATCGCCCAGGGCATCCAGCAGCGCTTCGAGGACCTCGACCACCTGCACGACATCGGCGAGCTGAGCCTGAAC
ATCTCCGGCTGCATGAACGCCTGCGGCCACCACCACATCGGCAACATCGGCATCCTCGGCGTCGACAAGAAC
GGCAGCGAGTGGTACCAGGTCACCCTCGGCGGCGCCCAGGGCAAGGACAGCGCGCTGGGCAAGGTGATCGGG
CCATCGTTCAGCGCCGCCGAGGTGCCGGCGGTGATCGAACGGATCGTCGAAACCTTCACCGACCTGCGGGTC
GGCCCGGAACGTTTCATCGACACCTTCAACCGGGTCGGCCTGGAGCCGTTCAAGGCCCGGGTCTACGCCAGG
ATGGAGGAACCGGCATGA
Translation:
MYQYDEYDQALVSERVAQFRDQIARRLDGELSEEEFLPLRLQNGLYLQKHAYMLRVAIPYGTLSSPQLRALA
HVARHYDRGYGHFTTRQNIQFNWIELEQVGDILEHLAGAQMHAIQTSGNCVRNITTEAFAGVAADEWTDPRP
LAEILRQWSTVNPEFLFLPRKFKIALSSAVEDRAAVQMHDIGLYLYRHPDAGELRLRVLVGGGLGRTPMLGQ
VIRDDLPWQHLLSYVEAILRVYNRYGRRDNKYKARIKILVKALGIEAFAREVEEEWQHLRDGPAQLTAEECQ
RVAERFVLPRYLPPAGGELAYGSARAVDPAFARWASRNVQAHKVPGYASVVLSTKPGASAPPGDVTAEQMER
VADWAERYGFGEIRVAHEQNLVLPDVRLENLHALWREACAAGLGTPNQGLLSDIIACPGGDYCALANAKSIP
IAQGIQQRFEDLDHLHDIGELSLNISGCMNACGHHHIGNIGILGVDKNGSEWYQVTLGGAQGKDSALGKVIG
PSFSAAEVPAVIERIVETFTDLRVGPERFIDTFNRVGLEPFKARVYARMEEPA*
AnnotationID:583GeneID:574
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 13:01:37
Gene Name:
Confidence Code:3
GeneProduct:putative sulfite or nitrite reductas
Cell Localization:()
Synonyms:cysI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative sulphite reductase hemoprotein, beta subunit
Functional Category Confidence Code:5
COGs:COG0155
Secondary Functional Category(ies):inorganic ion transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD16132.1| (AL646070) PROBABLE SULFITE REDUCTASE OXIDOREDUCTASE PROTEIN
           [Ralstonia solanacearum]
          Length = 553

 Score =  801 bits (2069), Expect = 0.0
 Identities = 382/552 (69%), Positives = 453/552 (82%), Gaps = 2/552 (0%)

>gb|AAN67984.1|AE016430_8 (AE016782) sulphite reductase hemoprotein, beta subunit
           [Pseudomonas putida KT2440]
          Length = 550

 Score =  702 bits (1811), Expect = 0.0
 Identities = 347/551 (62%), Positives = 422/551 (76%), Gaps = 4/551 (0%)

>gb|AAO56231.1| (AE016865) sulphite reductase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 552

 Score =  695 bits (1794), Expect = 0.0
 Identities = 339/551 (61%), Positives = 419/551 (76%), Gaps = 2/551 (0%)






 
Structural Features:
COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) 
[Inorganic ion transport and metabolism]
CD-Length = 510 residues, 100.0% aligned
Score =  509 bits (1312), Expect = 3e-145
Identities = 222/557 (39%), Positives = 288/557 (51%), Gaps = 55/557 (9%)








   
Genomic Context:






   
Comment:


















    ReferenceID:1151




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18293




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36861




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:574_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:574
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
981
                           PA4130_tr
                           translation of PA4130
                           557
                           99.28
                           99.64
                           0
                           2902.0
     

     
     
38901
                           gb|AAG07517.1|AE004829_7
                           (AE004829) probable sulfite or nitrite reductase [Pseudomonas aeruginosa PAO1]
                           557
                           99.28
                           99.64
                           0
                           2902.0
     

     
     
38902
                           emb|CAD16132.1|
                           (AL646070) PROBABLE SULFITE REDUCTASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           557
                           68.94
                           81.68
                           4
                           2069.0
     

     
     
38903
                           gb|AAQ61235.1|
                           (AE016922) sulfite reductase hemoprotein, beta subunit [Chromobacterium violaceum ATCC 12472]
                           557
                           64.27
                           78.81
                           5
                           1916.0
     

     
     
38904
                           gb|AAN67984.1|AE016430_8
                           (AE016782) sulphite reductase hemoprotein, beta subunit [Pseudomonas putida KT2440]
                           557
                           62.29
                           75.76
                           7
                           1814.0
     

     






      

          
GC ORFID: 43576How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4130Glimmer Score: 

          
Start: 4045289Stop: 4043616

          
Length: 1674


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4130 translation of PA4130Homolog Bit Score 1122.0

          
Other Homologs:  t_PA1838 (ORF: BLASTX 701.0), psyr_15may02_Scaffold1_revised_gene111 (ORF: BLASTX 699.0), t_PA4130 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACCAGTACGACGAATACGACCAGGCGCTGGTGAGCGAGCGGGTGGCGCAGTTCCGCGACCAGATCGCC 
CGCCGCCTCGACGGCGAACTGAGCGAGGAGGAGTTCCTCCCGCTGCGCCTGCAGAACGGCCTGTACCTGCAG 
AAGCACGCCTACATGCTGCGCGTGGCGATTCCCTACGGCACCCTCTCGTCGCCGCAACTGCGCGCCTTGGCG 
CACGTCGCCCGGCACTACGACCGCGGCTACGGGCACTTCACCACGCGGCAGAACATCCAGTTCAACTGGATC 
GAACTGGAGCAGGTCGGCGATATCCTCGAACACCTCGCCGGCGCGCAGATGCATGCGATCCAGACCTCCGGC 
AACTGCGTGCGCAACATCACCACCGAAGCCTTCGCCGGGGTCGCCGCGGACGAATGGACCGACCCCCGGCCG 
CTGGCCGAGATCCTGCGCCAGTGGTCGACGGTGAACCCGGAGTTCCTGTTCCTCCCGCGCAAGTTCAAGATC 
GCCCTCAGTTCGGCGGTGGAAGACCGCGCCGCGGTGCAGATGCACGACATCGGCCTGTACCTTTACCGCCAC 
CCCGACGCCGGCGAGTTGCGCCTGCGGGTCCTGGTCGGCGGCGGCCTGGGACGCACGCCGATGCTCGGCCAG 
GTGATCCGCGACGACCTGCCCTGGCAGCACCTGTTGTCCTACGTCGAGGCGATCCTGCGGGTCTACAACCGC 
TACGGCCGGCGCGACAACAAGTACAAGGCGCGGATCAAGATCCTGGTCAAGGCGCTGGGCATCGAGGCTTTC 
GCCCGCGAGGTGGAGGAAGAGTGGCAGCACCTGCGCGACGGCCCGGCACAACTGACTGCCGAGGAGTGCCAG 
CGGGTCGCCGAGCGCTTCGTATTGCCGCGCTACCTGCCGCCGGCCGGCGGCGAGCTGGCCTACGGCAGCGCC 
CGTGCGGTCGATCCGGCCTTCGCCCGCTGGGCCTCGCGCAACGTCCAGGCGCACAAGGTGCCGGGCTACGCC 
TCGGTGGTGCTGTCGACCAAGCCCGGCGCCAGCGCGCCGCCGGGCGACGTCACCGCGGAGCAGATGGAACGC 
GTCGCCGACTGGGCCGAGCGCTACGGTTTCGGCGAGATCCGCGTGGCCCACGAACAGAACCTGGTGCTCCCC 
GACGTGCGCCTGGAGAACCTCCACGCGCTGTGGCGCGAGGCCTGCGCAGCCGGCCTCGGCACGCCTAACCAG 
GGCCTGCTCAGCGACATCATCGCCTGTCCCGGCGGCGACTACTGCGCGCTGGCCAACGCCAAGTCGATCCCC 
ATCGCCCAGGGCATCCAGCAGCGCTTCGAGGACCTCGACCACCTGCACGACATCGGCGAGCTGAGCCTGAAC 
ATCTCCGGCTGCATGAACGCCTGCGGCCACCACCACATCGGCAACATCGGCATCCTCGGCGTCGACAAGAAC 
GGCAGCGAGTGGTACCAGGTCACCCTCGGCGGCGCCCAGGGCAAGGACAGCGCGCTGGGCAAGGTGATCGGG 
CCATCGTTCAGCGCCGCCGAGGTGCCGGCGGTGATCGAACGGATCGTCGAAACCTTCACCGACCTGCGGGTC 
GGCCCGGAACGTTTCATCGACACCTTCAACCGGGTCGGCCTGGAGCCGTTCAAGGCCCGGGTCTACGCCAGG 
ATGGAGGAACCGGCATGA