ViewGene

Locus Name:
GeneID:
Location:

GeneID:5734
TrivialName: PA14_44230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44230
PAO1 Ortholog Locus:
Sequence Length:189
Protein Length:62
Start: 3935669
Stop: 3935857
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGCACCTACCGACGACGCGCACCCTGCCCTACCAGCCTTCCGCCAACCCGGCCGGAACGCCCGCGCGTCTA
CCCCGCAAGCACAGCCGCTGGCTGGAACTGGAGCCGCTCGCCCTCCCTCTCGAACTGGCCTTCTGGGCGCTC
TGGCATTGCCGCCACGCGCGTCCGCCGGACGCTCGTCACGCCTGA
Translation:
MHLPTTRTLPYQPSANPAGTPARLPRKHSRWLELEPLALPLELAFWALWHCRHARPPDARHA*
AnnotationID:5736GeneID:5734
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 01:01:55
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|84328139|ref|ZP_00976148.1|  hypothetical protein Paer2_01000550 [Pseudomonas aeruginosa 2192]
 gi|84321530|ref|ZP_00969885.1|  hypothetical protein PaerC_01000545 [Pseudomonas aeruginosa C3719]
Length=62

 Score = 91.3 bits (225),  Expect = 1e-17
 Identities = 61/62 (98%), Positives = 62/62 (100%), Gaps = 0/62 (0%)

gi|94412957|ref|ZP_01292853.1|  hypothetical protein PaerP_01005248 [Pseudomonas aeruginosa PA7]
Length=62

 Score = 89.7 bits (221),  Expect = 3e-17
 Identities = 61/62 (98%), Positives = 62/62 (100%), Gaps = 0/62 (0%)


Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:11409
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28599
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48736How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1018240Stop: 1018052
Length: 189
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCACCTACCGACGACGCGCACCCTGCCCTACCAGCCTTCCGCCAACCCGGCCGGAACGCCCGCGCGTCTA
CCCCGCAAGCACAGCCGCTGGCTGGAACTGGAGCCGCTCGCCCTCCCTCTCGAACTGGCCTTCTGGGCGCTC
TGGCATTGCCGCCACGCGCGTCCGCCGGACGCTCGTCACGCCTGA