ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5731

TrivialName: PA14_44390

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_44390

PAO1 Ortholog Locus:

Sequence Length: 195

Protein Length: 64

Start: 3952819

Stop: 3953013

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAN69837.1|AE016622_14 (AE016790) cytochrome c oxidase, cbb3-type, CcoQ subunit [Pseudomonas putida KT2440] Identities = 41/61 (67%), Positives = 50/61 (81%)

Sequence:

GTGAGTGTGATGGATATCGGGACTCTGCGTGGACTGGGCACCGTGGTGATCATGGTCGCCTTCATCGGCCTG
GTGATCTGGGCCTACAGCGGCAAGCGCAAGAAGAGCTTCGACGAAGCGACGATGCTGCCCTTCGCAGACGAT
CCCGAAGCCAAAAAGCACGTCGAGCAAGCTTCTAGGAGTAACAAAGAATGA

Translation:

MSVMDIGTLRGLGTVVIMVAFIGLVIWAYSGKRKKSFDEATMLPFADDPEAKKHVEQASRSNKE*

AnnotationID:5733 GeneID:5731

AnnotatorUID: danlee

Modification Date/Time: 2006-06-02 01:01:31

Gene Name:

Confidence Code: 3

GeneProduct: putative cytochrome c oxidase subunit

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (12) Energy metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam05545,COG4736

Secondary Functional Category(ies): posttranslational modification, protein turnover, chaperones

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|84328188|ref|ZP_00976196.1|  COG4736: Cbb3-type cytochrome oxidase, subunit 3 [Pseudomonas 
aeruginosa 2192]
 gi|84321747|ref|ZP_00970101.1|  COG4736: Cbb3-type cytochrome oxidase, subunit 3 [Pseudomonas 
aeruginosa C3719]
 gi|94415109|ref|ZP_01294958.1|  hypothetical protein PaerP_01003218 [Pseudomonas aeruginosa PA7]
Length=61

 Score =  124 bits (310),  Expect = 1e-27
 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

>gb|AAN69837.1|AE016622_14 (AE016790) cytochrome c oxidase, cbb3-type, CcoQ subunit
          [Pseudomonas putida KT2440]
          Length = 63

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 41/61 (67%), Positives = 50/61 (81%)

>gb|AAM76066.1|AF521004_2 (AF521004) cytochrome c oxidase subunit [Pseudomonas stutzeri]
          Length = 62

 Score = 89.4 bits (220), Expect = 4e-18
 Identities = 43/62 (69%), Positives = 54/62 (87%), Gaps = 1/62 (1%)

>gb|AAN55396.1|AE015677_7 (AE015677) cytochrome c oxidase, cbb3-type, CcoQ subunit
          [Shewanella oneidensis MR-1]
          Length = 58

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 25/50 (50%), Positives = 39/50 (78%)

Structural Features:

pfam05545, FixQ, Cbb3-type cytochrome oxidase component FixQ.
CD-Length = 50 residues, 100.0% aligned
Score = 44.4 bits (105), Expect = 3e-06
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)

COG4736, CcoQ, Cbb3-type cytochrome oxidase, subunit 3 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 60 residues,  86.7% aligned
Score = 44.0 bits (104), Expect = 3e-06

Genomic Context:

Comment:

ReferenceID:15604

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28593

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37237

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5731_cdd.html

URL:

GC ORFID: `48733`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1001090`	Stop: `1000896`
Length: `195`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
`GTGAGTGTGATGGATATCGGGACTCTGCGTGGACTGGGCACCGTGGTGATCATGGTCGCCTTCATCGGCCTG GTGATCTGGGCCTACAGCGGCAAGCGCAAGAAGAGCTTCGACGAAGCGACGATGCTGCCCTTCGCAGACGAT CCCGAAGCCAAAAAGCACGTCGAGCAAGCTTCTAGGAGTAACAAAGAATGA`