ViewGene
Locus Name:
GeneID:
Location:

GeneID:573
TrivialName: PA14_20780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20780
PAO1 Ortholog Locus:PA3346
Sequence Length:1716
Protein Length:571
Start: 1787861
Stop: 1789576
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06734.1|AE004757_3 (AE004757) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 571/571 (100%), Positives = 571/571 (100%)
Sequence:
ATGAATCCCCCGGCGGCGCGGATCGAGAGCCTGACGATTCTCATCGCCGAGGACAACGCGGCCGACCGCCTG
CTGCTGTCGACCATCGTCAGCCGCCAGGGGCATCGCGTGCTGACCGCCGGCAACGGCCTGGAGGCGGTGGCG
CTGTTCGAGACCGAGCGGCCGCAACTGGTCCTGATGGACGTGATGATGCCGGTGATGGATGGCTTCGAGGCG
GCCCGGCGGATCAAGCAGCAGGCCGGCGAGGAGTTGGTGCCGATCATCTTCCTCACCTCCCTCAGCGAAACC
GAGGCGCTGGTGCAGAGCCTGGAGGCGGGCGGCGACGACTTCCTCTCCAAGCCGTACAACCGGGTGATCCTC
GAAGCCAAGATCAACGCCATGGGACGCCTGCACCTGCTGCAACGAACGGTGCTGGAGCAGCGCGACCTGATC
GTCCGGCACAACGAGCACCTGCTCAACGAACAGCGGGTGGCCAAGGCGGTGTTCGACAAGGTGGCCCATTCC
GGCTGCCTGAACGCCAGCAACGTGCGCTACCTGCAATCGCCCCTCGCGCTGTTCAACGGCGACCTGCTGCTG
GCCGCCTACAAGCCGTCCGGCGGCATGCACGTGCTGCTCGGCGACTTCACCGGCCACGGCCTGCCGGCGGCG
ATCGGCGCGATGCCGCTGGCCGAGGTGTTCTACGGGATGACCGCCAAGGGCTATCCGATGGCCGACATCCTC
CGCGAGATGAACGCCAAGCTGAAGCGCATCCTGCCGGTCGGCGTGTTCTGCTGCGCCACCTTGCTCAACCTG
AGCTTCCAGCGCGAACTGGTGGAGGTCTGGAACGGCGGCTTGCCGGACGGCTACCTGCTGCGCGCCGCCAGC
GGCGAGCGGGTCGCCCTGGTGTCCCGCCACCTGCCGCTGGGAATCCTCGAGCCGGCGGCGTTCAGCGACCGT
TGCGAAACCTATCCGCTGGATATCGAAGATCGGATATTCCTGTTTTCCGACGGTGTCCTCGAGGCCAGCAAC
AAGGCTGGCGAGATGTTCGGCGAGGCGCGGCTGCTCCAGCTGTTCGAGCGCAATCGCCAGCCGTCCGCGCTG
TTCGACGAGATCCAGCGCAGCCTGGCGCAGTTCCGCGGCGCGGTGCAGGACGACGTGAGCATGCTCGAAGTG
CGGCTGCAGCCGGATAGCGGCCTGCAATGCCCGCCGCTGGCGTTTTCCGATAGCGGCGTGAGCAGTCCGCTG
GACTGGTCGGTGAGCTTCGAATTCCGCGCCGAAACCCTCAAGCATTTCAACCCGCTGCCCCATGTGCTGCAA
CTGCTGCTCGAGGTCCACGACCTGCGCGCGCGTGGCGGTGCGCTGTATACGGTACTCGCCGAACTCTATTCG
AACGCCCTGGAACATGGCGTCATCGGCCTCGATTCGACGATGAAGAGCGACGCGGCGGGATTCGCCCGCTAT
TACCAGGAGCGGGTCAGCCGCCTGCAGGCCTTGCGCGACGGCTACGTGCGGCTGCACCTGGACCTGGCGCCG
CATGGCGCGGGGGGGCGTCTGCTGGTGCGGGTCGAGGACAGCGGCGAAGGTTTCGACGTGGAGCGCGCGCTG
AATGCCGTGGAGCGTCAGGAACGCCTCTGCGGCAGGGGTTTGCGCCTGATCCGCGAATTGTCCGATCGTTGC
CAGTGGTCGGCCGACGGAAAGGTGGTGTCCGTGGAGTTTTTCTGGTCGCCTCAGGCATAA
Translation:
MNPPAARIESLTILIAEDNAADRLLLSTIVSRQGHRVLTAGNGLEAVALFETERPQLVLMDVMMPVMDGFEA
ARRIKQQAGEELVPIIFLTSLSETEALVQSLEAGGDDFLSKPYNRVILEAKINAMGRLHLLQRTVLEQRDLI
VRHNEHLLNEQRVAKAVFDKVAHSGCLNASNVRYLQSPLALFNGDLLLAAYKPSGGMHVLLGDFTGHGLPAA
IGAMPLAEVFYGMTAKGYPMADILREMNAKLKRILPVGVFCCATLLNLSFQRELVEVWNGGLPDGYLLRAAS
GERVALVSRHLPLGILEPAAFSDRCETYPLDIEDRIFLFSDGVLEASNKAGEMFGEARLLQLFERNRQPSAL
FDEIQRSLAQFRGAVQDDVSMLEVRLQPDSGLQCPPLAFSDSGVSSPLDWSVSFEFRAETLKHFNPLPHVLQ
LLLEVHDLRARGGALYTVLAELYSNALEHGVIGLDSTMKSDAAGFARYYQERVSRLQALRDGYVRLHLDLAP
HGAGGRLLVRVEDSGEGFDVERALNAVERQERLCGRGLRLIRELSDRCQWSADGKVVSVEFFWSPQA*
AnnotationID:582GeneID:573
AnnotatorUID: diggins
Modification Date/Time: 2005-08-14 09:09:40
Gene Name:
Confidence Code:3
GeneProduct:putative sensor histidine kinase/response regulator
Cell Localization:()
Synonyms:PA3346
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative sensor histidine kinase/response regulator
Functional Category Confidence Code:5
COGs:COG2208,smart00448
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55482.1| (AE016862) response regulator [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 568

 Score =  714 bits (1844), Expect = 0.0
 Identities = 360/560 (64%), Positives = 429/560 (76%)

>gb|AAN69941.1|AE016632_12 (AE016790) sensor histidine kinase/response regulator [Pseudomonas
           putida KT2440]
          Length = 563

 Score =  686 bits (1770), Expect = 0.0
 Identities = 347/559 (62%), Positives = 419/559 (74%)








 
Structural Features:
COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit 
[Signal transduction mechanisms / Transcription]
CD-Length = 367 residues, 100.0% aligned
Score =  163 bits (414), Expect = 4e-41
Identities = 72/315 (22%), Positives = 110/315 (34%), Gaps = 31/315 (9%)

smart00448, REC, cheY-homologous receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  108 bits (270), Expect = 3e-24
Identities = 48/115 (41%), Positives = 78/115 (67%), Gaps = 3/115 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1149




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18291




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32215




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:573_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:573
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
980
                           PA3346_tr
                           translation of PA3346
                           571
                           99.99
                           99.99
                           0
                           2901.0
     

     
     
38896
                           gb|AAG06734.1|AE004757_3
                           (AE004757) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           571
                           99.99
                           99.99
                           0
                           2901.0
     

     
     
38897
                           gb|AAO55482.1|
                           (AE016862) response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           571
                           63.57
                           75.65
                           3
                           1844.0
     

     
     
38898
                           gb|AAN69941.1|AE016632_12
                           (AE016790) sensor histidine kinase/response regulator [Pseudomonas putida KT2440]
                           571
                           61.12
                           73.73
                           8
                           1767.0
     

     
     
38899
                           gb|AAD56291.1|
                           (AF031418) unknown [Pseudomonas putida]
                           571
                           60.94
                           73.73
                           8
                           1763.0
     

     






      

          
GC ORFID: 43575How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3346Glimmer Score: 

          
Start: 3166071Stop: 3164356

          
Length: 1716


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3346 translation of PA3346Homolog Bit Score 1122.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7924 (ORF: BLASTX 726.0), t_PA3346 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCCCCCGGCGGCGCGGATCGAGAGCCTGACGATTCTCATCGCCGAGGACAACGCGGCCGACCGCCTG 
CTGCTGTCGACCATCGTCAGCCGCCAGGGGCATCGCGTGCTGACCGCCGGCAACGGCCTGGAGGCGGTGGCG 
CTGTTCGAGACCGAGCGGCCGCAACTGGTCCTGATGGACGTGATGATGCCGGTGATGGATGGCTTCGAGGCG 
GCCCGGCGGATCAAGCAGCAGGCCGGCGAGGAGTTGGTGCCGATCATCTTCCTCACCTCCCTCAGCGAAACC 
GAGGCGCTGGTGCAGAGCCTGGAGGCGGGCGGCGACGACTTCCTCTCCAAGCCGTACAACCGGGTGATCCTC 
GAAGCCAAGATCAACGCCATGGGACGCCTGCACCTGCTGCAACGAACGGTGCTGGAGCAGCGCGACCTGATC 
GTCCGGCACAACGAGCACCTGCTCAACGAACAGCGGGTGGCCAAGGCGGTGTTCGACAAGGTGGCCCATTCC 
GGCTGCCTGAACGCCAGCAACGTGCGCTACCTGCAATCGCCCCTCGCGCTGTTCAACGGCGACCTGCTGCTG 
GCCGCCTACAAGCCGTCCGGCGGCATGCACGTGCTGCTCGGCGACTTCACCGGCCACGGCCTGCCGGCGGCG 
ATCGGCGCGATGCCGCTGGCCGAGGTGTTCTACGGGATGACCGCCAAGGGCTATCCGATGGCCGACATCCTC 
CGCGAGATGAACGCCAAGCTGAAGCGCATCCTGCCGGTCGGCGTGTTCTGCTGCGCCACCTTGCTCAACCTG 
AGCTTCCAGCGCGAACTGGTGGAGGTCTGGAACGGCGGCTTGCCGGACGGCTACCTGCTGCGCGCCGCCAGC 
GGCGAGCGGGTCGCCCTGGTGTCCCGCCACCTGCCGCTGGGAATCCTCGAGCCGGCGGCGTTCAGCGACCGT 
TGCGAAACCTATCCGCTGGATATCGAAGATCGGATATTCCTGTTTTCCGACGGTGTCCTCGAGGCCAGCAAC 
AAGGCTGGCGAGATGTTCGGCGAGGCGCGGCTGCTCCAGCTGTTCGAGCGCAATCGCCAGCCGTCCGCGCTG 
TTCGACGAGATCCAGCGCAGCCTGGCGCAGTTCCGCGGCGCGGTGCAGGACGACGTGAGCATGCTCGAAGTG 
CGGCTGCAGCCGGATAGCGGCCTGCAATGCCCGCCGCTGGCGTTTTCCGATAGCGGCGTGAGCAGTCCGCTG 
GACTGGTCGGTGAGCTTCGAATTCCGCGCCGAAACCCTCAAGCATTTCAACCCGCTGCCCCATGTGCTGCAA 
CTGCTGCTCGAGGTCCACGACCTGCGCGCGCGTGGCGGTGCGCTGTATACGGTACTCGCCGAACTCTATTCG 
AACGCCCTGGAACATGGCGTCATCGGCCTCGATTCGACGATGAAGAGCGACGCGGCGGGATTCGCCCGCTAT 
TACCAGGAGCGGGTCAGCCGCCTGCAGGCCTTGCGCGACGGCTACGTGCGGCTGCACCTGGACCTGGCGCCG 
CATGGCGCGGGGGGGCGTCTGCTGGTGCGGGTCGAGGACAGCGGCGAAGGTTTCGACGTGGAGCGCGCGCTG 
AATGCCGTGGAGCGTCAGGAACGCCTCTGCGGCAGGGGTTTGCGCCTGATCCGCGAATTGTCCGATCGTTGC 
CAGTGGTCGGCCGACGGAAAGGTGGTGTCCGTGGAGTTTTTCTGGTCGCCTCAGGCATAA