ViewGene
Locus Name:
GeneID:
Location:

GeneID:571
TrivialName: PA14_17010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17010
PAO1 Ortholog Locus:PA3660
Sequence Length:1746
Protein Length:581
Start: 1456171
Stop: 1457916
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07048.1|AE004785_12 (AE004785) probable sodium/hydrogen antiporter [Pseudomonas aeruginosa PAO1]
Identities = 580/581 (99%), Positives = 581/581 (100%)
Sequence:
ATGTCGGATAGCTGCCTACCGATCGCGATGGTGCAATCGGCGCAGTCGCATCGTCCAGGGACGAAGCCGGAG
ATCCCCGCCCTCATGCAAACCGTGTACACCGTTCTGACCCTGCTGCTGGTCGTCGGCGCCACCCGCCTGGCC
GCCCAGTTGCTGCCCTTGCCGCTACCGCTGATCCAGATCGCCGCCGGGGCCCTGCTGGCCTTGCCGTCCCTC
GGGCTGCACATTGCCCTCGACCCGGAGCTGTTCCTCTTCCTGTTCATTCCGCCGCTGCTGTTCGTCGATGGC
TGGCGCATTCCCAAGCGGGAAGTCTGGCGGATGCGCTGGCCGATCCTGATGATGGCGTTCGGCCTGGTGTTC
TTCACCGTGGTCGGCGCCGGCTATTTCATCCACCTGCTGATCCCGGAAATTCCCCTGGCGGCTTCCTTCGCC
CTCGCCGCCGTGCTGTCGCCCACGGACGCCCTGGCGGTCTCGGCGATCACCCAGGGGCGGCTGCCCAAGCGC
CTGATGCACCTGCTGGAGGGCGAGGCGCTGATGAACGATGCCTCTGGCCTGGTGGCATTCAAGTTCGCCATC
GCCGCGGCGATGACCGGCGTGTTCTCGCTGGTGGACGCCAGCCTCAACTTCCTCCTGGTCGCGGTCGGCGGC
CTGGCCATCGGGGTGTTCCTCAGCTGGTCGCTGGGCCGCATCCGCGCCTGGATGATCTCCCGTGGTTGGGAC
GACCCGGCGACCCACGTGGTACTGATGCTGTTGCTGCCGTTCGCCTCCTACATGGTGGCGGAACACCTGGGC
GTCTCCGGGATTCTCTCGGCGGTGGCGGCCGGCATGATGCAGAGCTGGGTCGACCTGCTGCCGCGGCAGACT
TCCACGCGCCTGCTCAACCGCAGCGTCTGGTCGATGCTGGAGTTCGCCTTCAACGGCGTGGTGTTCCTGCTG
CTCGGCCTGCAGTTGCCGGACATCATGAAGTCGGTGGCCAACCACCACGGCGACCTGCTCTGGCGTTCCTCG
CTGCTGCTGGCCTACGTGGCGGCGATCACCGCCGTGCTGATGCTGATCCGCTACGGCTGGGTCTATGGCTAC
TGGAAGTTGTCGCTGCGCATCGACCGCTGGCGCGGCAAGAGCCCGCCCGGGCTGAGCGGCATCTCCCTGCGC
CGTCTCTCCGCCCTCAGTGCATTGAGCGGCGTGCGTGGTGCGGTGACCCTGGCGGCGGTGCTGTCGGTACCG
ATGAGCCTGATGGATGGCAGCGCCTTCCCGCAGCGCGACCTGATCATCTTCATCGCCACCAGCGTGATCCTG
ATTTCCCTGATCGGCGCGACCATCGGCCTGCCGCTGCTGCTGCGCGGGCTGCCGGCGAGCAACAATGGCGCC
CACGAGCGCGAGCGGCGCGAGGCCTGGCGCAAGACCGCGGAGGCGGCGATCCGGGCCCTGGAGAGCGAGGAA
CTGCCGCAGGTGGAAGGCAACGATGCGGCGAATACTTCGCGGGTCGCCGAGGCGCGTGCGCAGATTATGGCT
GAATACCGCCAGTCGCTGGATACCGCACCGACCACCGATGAGGCCCGCGACCAGGCCCAAGCCCTGGAGATC
GCCGACAAGGCCTTGCGCCTGAAGGCGTTGCGCGCGCAGCGCCTGGAACTGTACCGGCAGCGGCGTAACAAC
GAGATCGACGACGAGACCCTGGGCGATATCCTGCGCGAGCTGGACCAGCAGGAAAGCTGGCTGACCAATCGC
TTCGCCCGCTGGGTGTGA
Translation:
MSDSCLPIAMVQSAQSHRPGTKPEIPALMQTVYTVLTLLLVVGATRLAAQLLPLPLPLIQIAAGALLALPSL
GLHIALDPELFLFLFIPPLLFVDGWRIPKREVWRMRWPILMMAFGLVFFTVVGAGYFIHLLIPEIPLAASFA
LAAVLSPTDALAVSAITQGRLPKRLMHLLEGEALMNDASGLVAFKFAIAAAMTGVFSLVDASLNFLLVAVGG
LAIGVFLSWSLGRIRAWMISRGWDDPATHVVLMLLLPFASYMVAEHLGVSGILSAVAAGMMQSWVDLLPRQT
STRLLNRSVWSMLEFAFNGVVFLLLGLQLPDIMKSVANHHGDLLWRSSLLLAYVAAITAVLMLIRYGWVYGY
WKLSLRIDRWRGKSPPGLSGISLRRLSALSALSGVRGAVTLAAVLSVPMSLMDGSAFPQRDLIIFIATSVIL
ISLIGATIGLPLLLRGLPASNNGAHERERREAWRKTAEAAIRALESEELPQVEGNDAANTSRVAEARAQIMA
EYRQSLDTAPTTDEARDQAQALEIADKALRLKALRAQRLELYRQRRNNEIDDETLGDILRELDQQESWLTNR
FARWV*
AnnotationID:580GeneID:571
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 09:09:54
Gene Name:
Confidence Code:3
GeneProduct:putative putative Na(+)/H(+) exchanger protein
Cell Localization:()
Synonyms:yjcE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0025,pfam00999
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67208.1|AE016347_9 (AE016779) Na+/H+ antiporter [Pseudomonas putida KT2440]
          Length = 566

 Score =  656 bits (1693), Expect = 0.0
 Identities = 339/546 (62%), Positives = 424/546 (77%), Gaps = 7/546 (1%)

>gb|AAN83483.1|AE016770_283 (AE016770) Putative Na(+)/H(+) exchanger yjcE [Escherichia coli
           CFT073]
          Length = 549

 Score =  414 bits (1063), Expect = e-114
 Identities = 241/552 (43%), Positives = 349/552 (63%), Gaps = 15/552 (2%)








 
Structural Features:
COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters 
[Inorganic ion transport and metabolism]
CD-Length = 429 residues,  99.8% aligned
Score =  277 bits (710), Expect = 5e-75
Identities = 173/454 (38%), Positives = 241/454 (53%), Gaps = 31/454 (6%)

pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family.
CD-Length = 397 residues,  99.7% aligned
Score =  239 bits (612), Expect = 1e-63
Identities = 133/427 (31%), Positives = 200/427 (46%), Gaps = 41/427 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1145




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18287




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31883




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:571_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:571
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
978
                           PA3660_tr
                           translation of PA3660
                           581
                           99.82
                           99.99
                           0
                           2906.0
     

     
     
38858
                           gb|AAG07048.1|AE004785_12
                           (AE004785) probable sodium/hydrogen antiporter [Pseudomonas aeruginosa PAO1]
                           581
                           99.82
                           99.99
                           0
                           2906.0
     

     
     
38859
                           dbj|BAA75912.1|
                           (AB024601) similar to YJCE-ECOLI [Pseudomonas aeruginosa]
                           581
                           99.65
                           99.82
                           0
                           2899.0
     

     
     
38860
                           gb|AAN67208.1|AE016347_9
                           (AE016779) Na+/H+ antiporter [Pseudomonas putida KT2440]
                           588
                           59.18
                           75.00
                           29
                           1696.0
     

     
     
38862
                           emb|CAC93099.1|
                           (AJ414158) putative putative Na(+)/H(+) exchanger protein [Yersinia pestis CO92]
                           588
                           45.06
                           60.71
                           46
                           1141.0
     

     






      

          
GC ORFID: 43573How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3660Glimmer Score: 

          
Start: 3497766Stop: 3496021

          
Length: 1746


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3660 translation of PA3660Homolog Bit Score 1123.0

          
Other Homologs:  t_PA3660 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGGATAGCTGCCTACCGATCGCGATGGTGCAATCGGCGCAGTCGCATCGTCCAGGGACGAAGCCGGAG 
ATCCCCGCCCTCATGCAAACCGTGTACACCGTTCTGACCCTGCTGCTGGTCGTCGGCGCCACCCGCCTGGCC 
GCCCAGTTGCTGCCCTTGCCGCTACCGCTGATCCAGATCGCCGCCGGGGCCCTGCTGGCCTTGCCGTCCCTC 
GGGCTGCACATTGCCCTCGACCCGGAGCTGTTCCTCTTCCTGTTCATTCCGCCGCTGCTGTTCGTCGATGGC 
TGGCGCATTCCCAAGCGGGAAGTCTGGCGGATGCGCTGGCCGATCCTGATGATGGCGTTCGGCCTGGTGTTC 
TTCACCGTGGTCGGCGCCGGCTATTTCATCCACCTGCTGATCCCGGAAATTCCCCTGGCGGCTTCCTTCGCC 
CTCGCCGCCGTGCTGTCGCCCACGGACGCCCTGGCGGTCTCGGCGATCACCCAGGGGCGGCTGCCCAAGCGC 
CTGATGCACCTGCTGGAGGGCGAGGCGCTGATGAACGATGCCTCTGGCCTGGTGGCATTCAAGTTCGCCATC 
GCCGCGGCGATGACCGGCGTGTTCTCGCTGGTGGACGCCAGCCTCAACTTCCTCCTGGTCGCGGTCGGCGGC 
CTGGCCATCGGGGTGTTCCTCAGCTGGTCGCTGGGCCGCATCCGCGCCTGGATGATCTCCCGTGGTTGGGAC 
GACCCGGCGACCCACGTGGTACTGATGCTGTTGCTGCCGTTCGCCTCCTACATGGTGGCGGAACACCTGGGC 
GTCTCCGGGATTCTCTCGGCGGTGGCGGCCGGCATGATGCAGAGCTGGGTCGACCTGCTGCCGCGGCAGACT 
TCCACGCGCCTGCTCAACCGCAGCGTCTGGTCGATGCTGGAGTTCGCCTTCAACGGCGTGGTGTTCCTGCTG 
CTCGGCCTGCAGTTGCCGGACATCATGAAGTCGGTGGCCAACCACCACGGCGACCTGCTCTGGCGTTCCTCG 
CTGCTGCTGGCCTACGTGGCGGCGATCACCGCCGTGCTGATGCTGATCCGCTACGGCTGGGTCTATGGCTAC 
TGGAAGTTGTCGCTGCGCATCGACCGCTGGCGCGGCAAGAGCCCGCCCGGGCTGAGCGGCATCTCCCTGCGC 
CGTCTCTCCGCCCTCAGTGCATTGAGCGGCGTGCGTGGTGCGGTGACCCTGGCGGCGGTGCTGTCGGTACCG 
ATGAGCCTGATGGATGGCAGCGCCTTCCCGCAGCGCGACCTGATCATCTTCATCGCCACCAGCGTGATCCTG 
ATTTCCCTGATCGGCGCGACCATCGGCCTGCCGCTGCTGCTGCGCGGGCTGCCGGCGAGCAACAATGGCGCC 
CACGAGCGCGAGCGGCGCGAGGCCTGGCGCAAGACCGCGGAGGCGGCGATCCGGGCCCTGGAGAGCGAGGAA 
CTGCCGCAGGTGGAAGGCAACGATGCGGCGAATACTTCGCGGGTCGCCGAGGCGCGTGCGCAGATTATGGCT 
GAATACCGCCAGTCGCTGGATACCGCACCGACCACCGATGAGGCCCGCGACCAGGCCCAAGCCCTGGAGATC 
GCCGACAAGGCCTTGCGCCTGAAGGCGTTGCGCGCGCAGCGCCTGGAACTGTACCGGCAGCGGCGTAACAAC 
GAGATCGACGACGAGACCCTGGGCGATATCCTGCGCGAGCTGGACCAGCAGGAAAGCTGGCTGACCAATCGC 
TTCGCCCGCTGGGTGTGA