ViewGene

Locus Name:
GeneID:
Location:

GeneID:5683
TrivialName: PA14_46540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46540
PAO1 Ortholog Locus:
Sequence Length:1701
Protein Length:566
Start: 4142401
Stop: 4144101
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD31263.1| (AL672115) HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti]
Identities = 212/575 (36%), Positives = 317/575 (55%), Gaps = 22/575 (3%)
Sequence:
ATGGTTTCCAGCTACGAAAGCAAGAACACGTCAGATGGCCTTACTCTGAAACTGTATCGCGGCGAAGGAGCG
GCTCTGCTCGCATTCGATCTCGATGAAGAGAGGGCTACCCGAGATTTCGTTGGCTTCACCATCGAGGTGCGA
TACCCAGGTTCCCTGAAGTGGGGGGCAATCCGAAATCGCCTGCATTTCGAATACCCACCGACTGAGCATAGA
GAGCGGACCTATAAGTCCACTGAAGCACCGCTCCAGAAATTCCGCTGGATACACGTTCCCACCGAAACTCCG
GAGGGCAACTTCGAATACCGCGTTACAGCACGGTACATGTCTGAAAACGAGACGCTGCACAACGGACCGCAA
GTGACGGGAAAAATCTCGCTGTCACCACAGACGATTGAGGACTTTGTGAACGTAGGGTTTACTCGCGGCTTC
GCTAGCTCACAAGCCTACGCAGATCGTTTCGAGAACGACAAAGGGATCCTCCCACCGCGTGGGACGCCAGCA
GAAAAGTACCTCAACCACGACATGACCCCATTCCAGAAGCACTATGAGTGGCTGGGTTTTGAAGCTCGCCGG
TTGATCCTGCAAACGCTCGAGGAGGTTGAGCATGATCCGGGCCTCCGCCTGGACGCGCTCGTGTACGAATGC
AAGGAGCCAGACATCCTCCAGCGCTTGGAGCGTCTTGGTAATCGCCTCCGGGTAATCATCGACGACCATGAT
GAGCAGGGAGATCCAGATTCTTGCGAGACCATCAGCGCTAACCGCCTAAAACAGAAGGGCGCACAAGTGAAG
CGCATGCACTTCCGTCGCCAACAGCACAACAAGGTGCTCCTCGTGCGCCGAGCAGACGGCTCGGCCGCGAAG
GTGCTGGCCGGTTCGACCAACTTCGCCATGCGCGGCCTCTACATCCAGGCAAACAACGCACTCTTGTTCGAG
GATGCAACGGTATCCGAAAAATTCAGCGAGCTGTTTGATGCGTACTGGAACACCTCTAAAGATTTCAGAGAA
AACCAGCTATCGAAGCAATGGTGGGTCGTTCGTGATGAACCCGAATCGCGAGTGTCCCTATGCTTCTCTCCA
CACACGGATAGTGGCCTGTCACTAGACCCGGTCGCTGATGCAATTGCGCAAGCCGACAGCTCAGTTCTGTAT
TCGGTGGTATTCCTGAACATCCTCAAAGGCACAGTGCGCAATGAGCTTGAGGCGCTTATGCAGCGCTCCTTG
TTCTCCTATGGTGTTGCGCAGCGAACAGGTGGTCTCTCCGTCACGAAGCCTGATGGAAGTGTCGGCCTGCTT
CCCTTTGCATACCTCGGAGAAACCGCTCCAGAGCCTTTCAAATCGGAGTGGAACGGCGACACAACTGAATTT
TCCAATATGGTCCATCACAAGTTCGTCGTGACGGACTTCAATGGAAAGCGCCCTGTCGTTTTCACCGGCTCG
TCGAATCTGGCAGCCGGCGGCGAGAAGGAGAATGGTGATCACCTGATATGCATCGAGGACCGCCGGATTGCT
ATCGTCTACGCAATCGAAGCACTGCGCCTCTTCGACCATTTCCATTTCAGGGTAAAGACCAAGCCTGGCGAG
AATGCCCCCCCAATACACTTGGCAAAACCACCAACTGAGGGAGAGGATCCATGGTTCGCCTCTTACTACAGA
AAGGGGCACCACAAGGAACGGGATCGCAAGCTGTTCAGTCAGTAG
Translation:
MVSSYESKNTSDGLTLKLYRGEGAALLAFDLDEERATRDFVGFTIEVRYPGSLKWGAIRNRLHFEYPPTEHR
ERTYKSTEAPLQKFRWIHVPTETPEGNFEYRVTARYMSENETLHNGPQVTGKISLSPQTIEDFVNVGFTRGF
ASSQAYADRFENDKGILPPRGTPAEKYLNHDMTPFQKHYEWLGFEARRLILQTLEEVEHDPGLRLDALVYEC
KEPDILQRLERLGNRLRVIIDDHDEQGDPDSCETISANRLKQKGAQVKRMHFRRQQHNKVLLVRRADGSAAK
VLAGSTNFAMRGLYIQANNALLFEDATVSEKFSELFDAYWNTSKDFRENQLSKQWWVVRDEPESRVSLCFSP
HTDSGLSLDPVADAIAQADSSVLYSVVFLNILKGTVRNELEALMQRSLFSYGVAQRTGGLSVTKPDGSVGLL
PFAYLGETAPEPFKSEWNGDTTEFSNMVHHKFVVTDFNGKRPVVFTGSSNLAAGGEKENGDHLICIEDRRIA
IVYAIEALRLFDHFHFRVKTKPGENAPPIHLAKPPTEGEDPWFASYYRKGHHKERDRKLFSQ*
AnnotationID:5685GeneID:5683
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 14:02:56
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1502
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Amino acid homology to ref|ZP_00086751.1| COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and 
related enzymes [Pseudomonas fluorescens PfO-1]Length = 548 Score =  135 bits (339), Expect = 3e-30
 Identities = 154/563 (27%), Positives = 227/563 (40%), Gaps = 57/563 (10%)
Structural Features:
COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases 
and related enzymes [Lipid metabolism].
             CD-Length = 438 residues, only  31.1% aligned
             Score = 56.4 bits (135), Expect = 8e-09
Genomic Context:
Comment:
ReferenceID:11317
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28498
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5683

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
197525 emb|CAD18679.1| (AL646085) HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 575 12.17 15.82 419 275.0
GC ORFID: 48685How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 811508Stop: 809808
Length: 1701
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGTTTCCAGCTACGAAAGCAAGAACACGTCAGATGGCCTTACTCTGAAACTGTATCGCGGCGAAGGAGCG
GCTCTGCTCGCATTCGATCTCGATGAAGAGAGGGCTACCCGAGATTTCGTTGGCTTCACCATCGAGGTGCGA
TACCCAGGTTCCCTGAAGTGGGGGGCAATCCGAAATCGCCTGCATTTCGAATACCCACCGACTGAGCATAGA
GAGCGGACCTATAAGTCCACTGAAGCACCGCTCCAGAAATTCCGCTGGATACACGTTCCCACCGAAACTCCG
GAGGGCAACTTCGAATACCGCGTTACAGCACGGTACATGTCTGAAAACGAGACGCTGCACAACGGACCGCAA
GTGACGGGAAAAATCTCGCTGTCACCACAGACGATTGAGGACTTTGTGAACGTAGGGTTTACTCGCGGCTTC
GCTAGCTCACAAGCCTACGCAGATCGTTTCGAGAACGACAAAGGGATCCTCCCACCGCGTGGGACGCCAGCA
GAAAAGTACCTCAACCACGACATGACCCCATTCCAGAAGCACTATGAGTGGCTGGGTTTTGAAGCTCGCCGG
TTGATCCTGCAAACGCTCGAGGAGGTTGAGCATGATCCGGGCCTCCGCCTGGACGCGCTCGTGTACGAATGC
AAGGAGCCAGACATCCTCCAGCGCTTGGAGCGTCTTGGTAATCGCCTCCGGGTAATCATCGACGACCATGAT
GAGCAGGGAGATCCAGATTCTTGCGAGACCATCAGCGCTAACCGCCTAAAACAGAAGGGCGCACAAGTGAAG
CGCATGCACTTCCGTCGCCAACAGCACAACAAGGTGCTCCTCGTGCGCCGAGCAGACGGCTCGGCCGCGAAG
GTGCTGGCCGGTTCGACCAACTTCGCCATGCGCGGCCTCTACATCCAGGCAAACAACGCACTCTTGTTCGAG
GATGCAACGGTATCCGAAAAATTCAGCGAGCTGTTTGATGCGTACTGGAACACCTCTAAAGATTTCAGAGAA
AACCAGCTATCGAAGCAATGGTGGGTCGTTCGTGATGAACCCGAATCGCGAGTGTCCCTATGCTTCTCTCCA
CACACGGATAGTGGCCTGTCACTAGACCCGGTCGCTGATGCAATTGCGCAAGCCGACAGCTCAGTTCTGTAT
TCGGTGGTATTCCTGAACATCCTCAAAGGCACAGTGCGCAATGAGCTTGAGGCGCTTATGCAGCGCTCCTTG
TTCTCCTATGGTGTTGCGCAGCGAACAGGTGGTCTCTCCGTCACGAAGCCTGATGGAAGTGTCGGCCTGCTT
CCCTTTGCATACCTCGGAGAAACCGCTCCAGAGCCTTTCAAATCGGAGTGGAACGGCGACACAACTGAATTT
TCCAATATGGTCCATCACAAGTTCGTCGTGACGGACTTCAATGGAAAGCGCCCTGTCGTTTTCACCGGCTCG
TCGAATCTGGCAGCCGGCGGCGAGAAGGAGAATGGTGATCACCTGATATGCATCGAGGACCGCCGGATTGCT
ATCGTCTACGCAATCGAAGCACTGCGCCTCTTCGACCATTTCCATTTCAGGGTAAAGACCAAGCCTGGCGAG
AATGCCCCCCCAATACACTTGGCAAAACCACCAACTGAGGGAGAGGATCCATGGTTCGCCTCTTACTACAGA
AAGGGGCACCACAAGGAACGGGATCGCAAGCTGTTCAGTCAGTAG