ViewGene
Locus Name:
GeneID:
Location:

GeneID:5682
TrivialName: PA14_46560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46560
PAO1 Ortholog Locus:
Sequence Length:402
Protein Length:133
Start: 4145865
Stop: 4145464
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD16996.1| (AL646074) PUTATIVE DRUG EFFLUX LIPOPROTEIN [Ralstonia solanacearum]
Identities = 109/131 (83%), Positives = 119/131 (90%)
Sequence:
GTGCTGGGGCTGCGTTGGCGCCTGTTTGACTTCGGCCGCATCGATGCCCAGATCGACCTGGCCAAAGGGCAG
GAAGCCGAGCAACTGGCGGCTTACCGCCTCGCCGTGCTGCGCGCCACCGAGGACGTGGAAAACGCCTTCTCG
GCACTGGTCAAGCGTGAGCAGCAGGCCAACGTGCTTGAGCAGGGCGTGGATTCGCTCAGCCGCGCGCGGCAG
GCATCGTTCGAGGCCTACCAGCAGGGCGTCGTCAGCTTGATCGAAGTGCTGCAGGCCGACGACAACCTGCTG
CGCGCCGCCGATGCCCGAGCCCAGGCGCAAACCGAGTCGGCCCGCACTGGCGTTGCGGCATTCAAAGCGTTG
GGCGGTGGCTGGAAGGTGCCCGAGGCGCTTGCGGCCAAGTGA
Translation:
MLGLRWRLFDFGRIDAQIDLAKGQEAEQLAAYRLAVLRATEDVENAFSALVKREQQANVLEQGVDSLSRARQ
ASFEAYQQGVVSLIEVLQADDNLLRAADARAQAQTESARTGVAAFKALGGGWKVPEALAAK*
AnnotationID:5684GeneID:5682
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 14:02:29
Gene Name:
Confidence Code:3
GeneProduct:possible outer membrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1538, pfam02321
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|67909728|ref|ZP_00508123.1|  RND efflux system, outer membrane lipoprotein, NodT [Polaromonas sp. JS666]
    Score =  208 bits (530),  Expect = 4e-53
    Identities = 109/131 (83%), Positives = 118/131 (90%), Gaps = 0/131 (0%)
gi|17430233|emb|CAD16996.1|  PUTATIVE DRUG EFFLUX LIPOPROTEIN [Ralstonia solanacearum]
     Score =  207 bits (528),  Expect = 6e-53
     Identities = 109/131 (83%), Positives = 119/131 (90%), Gaps = 0/131 (0%)






 
Structural Features:
COG1538, TolC, Outer membrane protein.
       CD-Length = 457 residues, only  28.7% aligned
       Score = 51.7 bits (123), Expect = 3e-08
pfam02321, OEP, Outer membrane efflux protein.
      CD-Length = 188 residues, only  46.3% aligned
       Score = 42.7 bits (100), Expect = 1e-05






   
Genomic Context:






   
Comment:


















    ReferenceID:15549




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        11004187,2216730,10879525,1126


MedLine:
        




    
Source:






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:28496




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5682
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197520
                           emb|CAD16996.1|
                           (AL646074) PUTATIVE DRUG EFFLUX LIPOPROTEIN [Ralstonia solanacearum]
                           486
                           23.04
                           25.10
                           353
                           531.0
     

     
     
197521
                           gb|AAM39737.1|
                           (AE012139) outer membrane protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           490
                           20.81
                           23.06
                           357
                           487.0
     

     
     
197522
                           gb|AAM35327.1|
                           (AE011670) outer membrane protein [Xanthomonas axonopodis pv. citri str. 306]
                           503
                           19.08
                           22.06
                           370
                           460.0
     

     
     
197523
                           gb|AAN68906.1|AE016522_3
                           (AE016786) outer membrane lipoprotein [Pseudomonas putida KT2440]
                           487
                           16.63
                           20.53
                           354
                           396.0
     

     
     
197524
                           gb|AAK23761.1|
                           (AE005853) efflux system protein [Caulobacter crescentus CB15]
                           484
                           16.32
                           20.04
                           357
                           389.0
     

     






      

          
GC ORFID: 48684How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 808044Stop: 808445

          
Length: 402


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold11_revised_gene1759 related to: gi|17547927|ref|NP_521329.1| (NC_003295) PUTATIVE DRUG EFFLUX LIPOPROTEIN [Ralstonia solanacearum] emb|CAD16996.1| (AL646074) PUTATIVE DRUG EFFLUX LIPOPROTEIN [Ralstonia solanacearum]Homolog Bit Score 170.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1759 related to: gi|17547927|ref|NP_521329.1| (NC_003295) PUTATIVE DRUG EFFLUX LIPOPROTEIN [Ralstonia solanacearum] emb|CAD16996.1| (AL646074) PUTATIVE DRUG EFFLUX LIPOPROTEIN [Ralstonia solanacearum] (BLASTP 170)

          
GC ORF Sequence

           
GTGCTGGGGCTGCGTTGGCGCCTGTTTGACTTCGGCCGCATCGATGCCCAGATCGACCTGGCCAAAGGGCAG 
GAAGCCGAGCAACTGGCGGCTTACCGCCTCGCCGTGCTGCGCGCCACCGAGGACGTGGAAAACGCCTTCTCG 
GCACTGGTCAAGCGTGAGCAGCAGGCCAACGTGCTTGAGCAGGGCGTGGATTCGCTCAGCCGCGCGCGGCAG 
GCATCGTTCGAGGCCTACCAGCAGGGCGTCGTCAGCTTGATCGAAGTGCTGCAGGCCGACGACAACCTGCTG 
CGCGCCGCCGATGCCCGAGCCCAGGCGCAAACCGAGTCGGCCCGCACTGGCGTTGCGGCATTCAAAGCGTTG 
GGCGGTGGCTGGAAGGTGCCCGAGGCGCTTGCGGCCAAGTGA