ViewGene

Locus Name:
GeneID:
Location:

GeneID:5681
TrivialName: PA14_46610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46610
PAO1 Ortholog Locus:
Sequence Length:474
Protein Length:157
Start: 4152822
Stop: 4152349
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAB51030.1| (AP003004) hypothetical protein [Mesorhizobium loti]
Identities = 52/98 (53%), Positives = 59/98 (60%)
Sequence:
ATGGCCGTCGAGCCGGACAGCGCGGGGGTGCGCTTCCCTCCGCCCTTCATCTATCTGGGAGCGCTGCTGTTG
GGGCTGGCGGCGGAGCGGTTCGTCGCCCTGCACTCTTTCGGCATCGATTGGTGGTTGCTGATCGCAATGGGC
GCGCTGCCGTTCGCTGCCGGCGCGGTAATGATGCTTGCGGCGGCGGGGCTGTTCCGGCGTCTGGGCACCAAC
ATTCCGCCGTCGCGACCAACGACCCTCATCGCAACGACCGGTCCCTATCGGTGGACCCGCAATCCCATGTAT
CTCGGCATGGCGCTTATCTATGCAGGCCTTGCGGTCGGCTTCGACGGACCGATCGCCTTCGCGTTGCTTCCG
TTGGTGTTGGTCGCGATCCAGACGCAGGTGATCGCCCGCGAGGAGCGCTATCTCGAAGCAAAGTTCGGCGAC
GACTACCTCCGCTACAAGGCCGAGGTTCGCCGCTGGCTCTGA
Translation:
MAVEPDSAGVRFPPPFIYLGALLLGLAAERFVALHSFGIDWWLLIAMGALPFAAGAVMMLAAAGLFRRLGTN
IPPSRPTTLIATTGPYRWTRNPMYLGMALIYAGLAVGFDGPIAFALLPLVLVAIQTQVIAREERYLEAKFGD
DYLRYKAEVRRWL*
AnnotationID:5683GeneID:5681
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 14:02:49
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2020
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|53686920|ref|ZP_00106918.2|  COG2020: Putative protein-S-isoprenylcysteine 
methyltransferase [Nostoc punctiforme PCC 73102]
      Score =  115 bits (287),  Expect = 6e-25
      Identities = 65/155 (41%), Positives = 90/155 (58%), Gaps = 8/155 (5%)
Structural Features:
COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational 
modification, protein turnover, chaperones].
             CD-Length = 187 residues, only  50.3% aligned
             Score = 70.1 bits (171), Expect = 1e-13
Genomic Context:
Comment:
ReferenceID:11313
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28493
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48683How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 801087Stop: 801560
Length: 474
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCCGTCGAGCCGGACAGCGCGGGGGTGCGCTTCCCTCCGCCCTTCATCTATCTGGGAGCGCTGCTGTTG
GGGCTGGCGGCGGAGCGGTTCGTCGCCCTGCACTCTTTCGGCATCGATTGGTGGTTGCTGATCGCAATGGGC
GCGCTGCCGTTCGCTGCCGGCGCGGTAATGATGCTTGCGGCGGCGGGGCTGTTCCGGCGTCTGGGCACCAAC
ATTCCGCCGTCGCGACCAACGACCCTCATCGCAACGACCGGTCCCTATCGGTGGACCCGCAATCCCATGTAT
CTCGGCATGGCGCTTATCTATGCAGGCCTTGCGGTCGGCTTCGACGGACCGATCGCCTTCGCGTTGCTTCCG
TTGGTGTTGGTCGCGATCCAGACGCAGGTGATCGCCCGCGAGGAGCGCTATCTCGAAGCAAAGTTCGGCGAC
GACTACCTCCGCTACAAGGCCGAGGTTCGCCGCTGGCTCTGA