ViewGene
Locus Name:
GeneID:
Location:

GeneID:5680
TrivialName: PA14_46620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46620
PAO1 Ortholog Locus:
Sequence Length:1281
Protein Length:426
Start: 4154124
Stop: 4152844
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL42625.1| (AE009119) pyridine nucleotide-disulphide oxidoreductase [Agrobacterium tumefaciens str. C58 (U. Washington)]
Identities = 231/300 (77%), Positives = 255/300 (85%)
Sequence:
TTGGTCTTCGACCGAACCTTCGACACCTTCAAGCAGGGCCTGTGGTGCAAACGACTGCTGGCAGCCGGCCGC
GATGGCTGCGCTGAACAGCGCCTCCTTGTTCTCGAAACGTCTATAGATGCTGAGCTTGGATATCTTCGCCCG
CTGGGCGACCTTGTCCAACGTCGTCGCTTGAAAACCCAATTCCACAAAAAGTTCGCTCGCGGCGTCGAGTAT
CGTTTGGGCAAGCGCCTCGTTGGTGGGCCGACCGCGCCGTGCCTGTATGGTTTCGGTCATGATATTGGTACT
TTACAGTATCTTAATTTAAGATTTAGGATACCACTCAGTGTCTTAAATGAGCAATCCAAGGGCTTGGCTACA
ACCTGCCCTCCAGCGGAGCCCATCACCATGAATGACGTCATCATCATCGGCGGAAGTTTTGCAGGTCTCGCC
GCCGCTTTGCAGCTCGGCCGTGCCCGTCGCAAGGTCATCGTTCTCGATACCGGTCGGCCGCGTAACCGCTTT
GCCGGCCATTCGCATGGTCTGCTCGGTCACGATCACACGCCGCCGCTGGACATCCTGGCCGCGGCGCGGCAG
CAGTTGACGCGCTATCCAACGGTCAGGCTAGTCAATGCCCGGGCAGAGAAGATTTCTGGCGTAATAGACGAT
TTCTGCGTTGTCACTGACGATCACGAAAGCCTAAAGGCCCGCCGCGTGATCCTGAGCTATGGCGTTGCCGAT
CAGATGCCTGATGTTCCAGGCTTTGCCGAGAGTTGGGGCACGTCCATCGTCCCCTGCCCCTATTGCGACGGC
TTTGAAGCCGCCGGCCAGCATTGGGGCCTCGTGTGGTCCGGCCCGCAATCGCACAACCAGGTCAGGCTGTTC
CTCGATTGGACCGACAGGTTGACTGTCTTTGCCGATGGTCACGACATTACACCTGATATCCAGGCCGATCTG
GCGCACCGCAACATACCTGTCGTCGACGGACGGATCGTCGAGATCGCCCATCACCAGGGGCATATCGCTACC
GTCAATCTCGACACTGGCTCCACTGTCGCGGTCGACATCCTGTTTGCTCATCCGCGCAACAAGCCGTCCGCA
AACCTGCATGAATCGTTGGGCCTTGCCACGATGGATACGCCCACCGGCGTCGTGCTCAAGGTCGACGAGCGC
CGCCAAACCAGCACGCCTGGCATCTATGCCGCCGGCGATCTCACCACCCCCATATTGCCCTCGGTCACCCAG
GCATCATCGCAGGGCGCGATGGCGGGTATTTTCGCCCAGCAGTCGATGCTGGCTTGA
Translation:
MVFDRTFDTFKQGLWCKRLLAAGRDGCAEQRLLVLETSIDAELGYLRPLGDLVQRRRLKTQFHKKFARGVEY
RLGKRLVGGPTAPCLYGFGHDIGTLQYLNLRFRIPLSVLNEQSKGLATTCPPAEPITMNDVIIIGGSFAGLA
AALQLGRARRKVIVLDTGRPRNRFAGHSHGLLGHDHTPPLDILAAARQQLTRYPTVRLVNARAEKISGVIDD
FCVVTDDHESLKARRVILSYGVADQMPDVPGFAESWGTSIVPCPYCDGFEAAGQHWGLVWSGPQSHNQVRLF
LDWTDRLTVFADGHDITPDIQADLAHRNIPVVDGRIVEIAHHQGHIATVNLDTGSTVAVDILFAHPRNKPSA
NLHESLGLATMDTPTGVVLKVDERRQTSTPGIYAAGDLTTPILPSVTQASSQGAMAGIFAQQSMLA*
AnnotationID:5682GeneID:5680
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 15:03:32
Gene Name:
Confidence Code:3
GeneProduct:putative pyridine nucleotide-disulphide oxidoreductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0492
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|73538272|ref|YP_298639.1|  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Ralstonia 
eutropha JMP134]
    Length=338
    Score =  546 bits (1406),  Expect = 7e-154
    Identities = 264/300 (88%), Positives = 276/300 (92%), Gaps = 0/300 (0%)
gi|17935519|ref|NP_532309.1|  pyridine nucleotide-disulphide oxidoreductase [Agrobacterium 
tumefaciens str. C58]
    Length=338
    Score =  471 bits (1213),  Expect = 2e-131
    Identities = 231/300 (77%), Positives = 255/300 (85%), Gaps = 0/300 (0%)






 
Structural Features:
COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].
             CD-Length = 305 residues,  89.5% aligned
             Score =  145 bits (368), Expect = 7e-36






   
Genomic Context:






   
Comment:


















    ReferenceID:15547




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28491




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5680
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197516
                           gb|AAL42625.1|
                           (AE009119) pyridine nucleotide-disulphide oxidoreductase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           437
                           54.00
                           60.64
                           110
                           1208.0
     

     
     
197517
                           gb|AAK87402.1|
                           (AE008084) AGR_C_2995p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           437
                           54.00
                           60.64
                           110
                           1208.0
     

     
     
197518
                           gb|AAL41260.1|
                           (AE008996) oxidoreductase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           432
                           28.24
                           39.35
                           141
                           534.0
     

     
     
197519
                           gb|AAK86054.1|
                           (AE007963) AGR_C_405p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           432
                           28.24
                           39.35
                           141
                           534.0
     

     






      

          
GC ORFID: 48682How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 799785Stop: 801065

          
Length: 1281


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGGTCTTCGACCGAACCTTCGACACCTTCAAGCAGGGCCTGTGGTGCAAACGACTGCTGGCAGCCGGCCGC 
GATGGCTGCGCTGAACAGCGCCTCCTTGTTCTCGAAACGTCTATAGATGCTGAGCTTGGATATCTTCGCCCG 
CTGGGCGACCTTGTCCAACGTCGTCGCTTGAAAACCCAATTCCACAAAAAGTTCGCTCGCGGCGTCGAGTAT 
CGTTTGGGCAAGCGCCTCGTTGGTGGGCCGACCGCGCCGTGCCTGTATGGTTTCGGTCATGATATTGGTACT 
TTACAGTATCTTAATTTAAGATTTAGGATACCACTCAGTGTCTTAAATGAGCAATCCAAGGGCTTGGCTACA 
ACCTGCCCTCCAGCGGAGCCCATCACCATGAATGACGTCATCATCATCGGCGGAAGTTTTGCAGGTCTCGCC 
GCCGCTTTGCAGCTCGGCCGTGCCCGTCGCAAGGTCATCGTTCTCGATACCGGTCGGCCGCGTAACCGCTTT 
GCCGGCCATTCGCATGGTCTGCTCGGTCACGATCACACGCCGCCGCTGGACATCCTGGCCGCGGCGCGGCAG 
CAGTTGACGCGCTATCCAACGGTCAGGCTAGTCAATGCCCGGGCAGAGAAGATTTCTGGCGTAATAGACGAT 
TTCTGCGTTGTCACTGACGATCACGAAAGCCTAAAGGCCCGCCGCGTGATCCTGAGCTATGGCGTTGCCGAT 
CAGATGCCTGATGTTCCAGGCTTTGCCGAGAGTTGGGGCACGTCCATCGTCCCCTGCCCCTATTGCGACGGC 
TTTGAAGCCGCCGGCCAGCATTGGGGCCTCGTGTGGTCCGGCCCGCAATCGCACAACCAGGTCAGGCTGTTC 
CTCGATTGGACCGACAGGTTGACTGTCTTTGCCGATGGTCACGACATTACACCTGATATCCAGGCCGATCTG 
GCGCACCGCAACATACCTGTCGTCGACGGACGGATCGTCGAGATCGCCCATCACCAGGGGCATATCGCTACC 
GTCAATCTCGACACTGGCTCCACTGTCGCGGTCGACATCCTGTTTGCTCATCCGCGCAACAAGCCGTCCGCA 
AACCTGCATGAATCGTTGGGCCTTGCCACGATGGATACGCCCACCGGCGTCGTGCTCAAGGTCGACGAGCGC 
CGCCAAACCAGCACGCCTGGCATCTATGCCGCCGGCGATCTCACCACCCCCATATTGCCCTCGGTCACCCAG 
GCATCATCGCAGGGCGCGATGGCGGGTATTTTCGCCCAGCAGTCGATGCTGGCTTGA