ViewGene
Locus Name:
GeneID:
Location:

GeneID:568
TrivialName: PA14_72390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72390
PAO1 Ortholog Locus:PA5484
Sequence Length:1788
Protein Length:595
Start: 6447605
Stop: 6449392
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08869.1|AE004961_4 (AE004961) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 588/595 (98%), Positives = 591/595 (99%)
Sequence:
ATGAGCATGCCGCTGCCGATGAAGCTCCGGACCCGGTTGTTCCTCAGCATTTCCGCGCTGATCACCGTCTCG
CTGTTCGGCCTGTTGCTCGGGTTGTTCAGCGTGATGCAGCTCGGCCGCGCTCAGGAGCAACGGATGTCGCAC
CACCACGCGACCATCGAGGTGAGCCAGCAGTTGCGCCAGCTGCTCGGCGACCAGTTGGTCATACTGCTCCGC
GAAAAACCCGACGGGCAGGCCCTGGAGCGCTCGCAGAACGATTTCCGACGGGTCCTGGAACAGGGTCGGGCG
AATACCGTCGACGGCGCCGAGCAGGCCGCCCTGGATGGCGTTCGCGACGCCTACCTGCAACTGCAGGCGCAC
ACCCCGGCGCTGCTCAAGGCGCCCATGGCCGACAACGACGGCTTCAGCGAAGCCTTCAATACCCTGCGCCTG
CGCCTGCAGGACCTGCAGCAACTGGCGCTGGCCGGCATCAGCGACGCCGAGACCAGCGCCCGCCACCGAGCC
TACCTGGTCGCCGGCCTGCTTGGCCTGGTGGGCGTCGCCATCCTGCTGATCGGTtTCGTCACCGCCCACAGC
ATCGCCCGGCGCTTCGGCGCACCGATCGAAACCCTGGCGCGGGCGGCGGACAGGATCGGCGAAGGCGATTTC
GACGTGACCCTGCCGATGACCAACGTCGCCGAGGTCGGCCAGTTGACCCGGCGTTTCGGCCTGATGGCCGAG
GCCCTGCGGCAGTACCGCAAGACCAGCGTCGAAGAGGTGCTTTCCGGCGAGCGGCGCCTGCAGGCGGTACTC
GACAGCATCGACGACGGCCTGGTGATCTTCGACAACCAGGGGCGCATCGAACACGCCAACCCGGTCGCGATC
CGCCAGCTGTTCGTCTCCAACGACCCCCATGGCAAGCGGATCGACGAAATACTCAGCGATGTCGATGTCCAG
GAAGCGGTGGAAAAGGCCCTGCTCGGCGAAGTCCAGGACGAGGCAATGCCCGACCTGGTGGTGGACGTCGCC
GGCGAGTCGCGCCTGCTGGCCTGGTCGCTGTATCCGGTCACCCATCCCGGCGGGCATAGCGTCGGCGCGGTG
CTGGTGGTCCGCGACGTGACCGAGCAGCGCGCCTTCGAACGGGTCCGCAGCGAATTCGTCCTGCGCGCCTCC
CACGAACTGCGCACGCCGGTGACCGGCATGCAGATGGCCTTCAGCCTGCTCCGCGAACGCCTGGACTTCCCC
GCGGAGTCACGGGAAGCGGACCTGATCCAGACGGTGGACGAAGAGATGTCGCGGCTGGTCCTGCTGATCAAC
GACCTGTTGAACTTCTCGCGCTACCAGACCGGCATGCAGAAGCTCGAACTGGCTTCCTGCGACCTCGTCGAC
CTGCTCACCCAGGCGCAGCAGCGTTTCACTCCCAAGGGCGAGGCCCGCCGGGTCTCGCTGCAACTGGAGCTG
GGCGATGAGCTGCCGCGCCTGCAGCTCGATCGCCTGCAGATCGAGCGGGTGATCGACAACCTGCTGGAAAAC
GCCCTGCGCCATAGCAGCGAAGGCGGGCAGATCCACCTGCAGGCCCGGCGCCAGGGCGACCGGGTGCTGATC
GCGGTGGAAGACAATGGCGAAGGCATTCCCTTCAGCCAGCAAGGACGGATCTTCGAGCCTTTCGTCCAGGTC
GGACGCAAGAAGGGCGGCGCCGGCCTCGGCCTGGCGCTGTGCAAGGAAATCATCCAGCTGCATGGCGGGCGC
ATCGCGGTGCGCTCGCAACCGGGCCAGGGCGCGCGCTTCTACATGCTGCTGCCGGTGTGA
Translation:
MSMPLPMKLRTRLFLSISALITVSLFGLLLGLFSVMQLGRAQEQRMSHHHATIEVSQQLRQLLGDQLVILLR
EKPDGQALERSQNDFRRVLEQGRANTVDGAEQAALDGVRDAYLQLQAHTPALLKAPMADNDGFSEAFNTLRL
RLQDLQQLALAGISDAETSARHRAYLVAGLLGLVGVAILLIGFVTAHSIARRFGAPIETLARAADRIGEGDF
DVTLPMTNVAEVGQLTRRFGLMAEALRQYRKTSVEEVLSGERRLQAVLDSIDDGLVIFDNQGRIEHANPVAI
RQLFVSNDPHGKRIDEILSDVDVQEAVEKALLGEVQDEAMPDLVVDVAGESRLLAWSLYPVTHPGGHSVGAV
LVVRDVTEQRAFERVRSEFVLRASHELRTPVTGMQMAFSLLRERLDFPAESREADLIQTVDEEMSRLVLLIN
DLLNFSRYQTGMQKLELASCDLVDLLTQAQQRFTPKGEARRVSLQLELGDELPRLQLDRLQIERVIDNLLEN
ALRHSSEGGQIHLQARRQGDRVLIAVEDNGEGIPFSQQGRIFEPFVQVGRKKGGAGLGLALCKEIIQLHGGR
IAVRSQPGQGARFYMLLPV*
AnnotationID:577GeneID:568
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 07:07:48
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor
Cell Localization:()
Synonyms:kinB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative histidine protein kinase
Functional Category Confidence Code:5
COGs:COG5002
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53880.1| (AE016857) sensory box histidine kinase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 595

 Score =  647 bits (1670), Expect = 0.0
 Identities = 343/593 (57%), Positives = 435/593 (73%), Gaps = 2/593 (0%)

>gb|AAN65766.1|AE016202_9 (AE016774) sensory box histidine kinase [Pseudomonas putida KT2440]
          Length = 593

 Score =  623 bits (1607), Expect = e-178
 Identities = 332/592 (56%), Positives = 433/592 (73%), Gaps = 5/592 (0%)








 
Structural Features:
COG5002, VicK, Signal transduction histidine kinase 
[Signal transduction mechanisms]
CD-Length = 459 residues,  89.5% aligned
Score =  196 bits (499), Expect = 7e-51
Identities = 126/428 (29%), Positives = 209/428 (48%), Gaps = 24/428 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1139




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18281




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33235




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:568_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:568
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
975
                           PA5484_tr
                           translation of PA5484
                           595
                           98.82
                           99.32
                           0
                           2914.0
     

     
     
38590
                           gb|AAG08869.1|AE004961_4
                           (AE004961) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           595
                           98.82
                           99.32
                           0
                           2914.0
     

     
     
38591
                           gb|AAB68790.1|
                           (U97063) histidine protein kinase; KinB [Pseudomonas aeruginosa]
                           595
                           98.65
                           98.99
                           0
                           2909.0
     

     
     
38592
                           gb|AAO53880.1|
                           (AE016857) sensory box histidine kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           600
                           57.00
                           73.33
                           10
                           1675.0
     

     
     
38593
                           gb|AAN65766.1|AE016202_9
                           (AE016774) sensory box histidine kinase [Pseudomonas putida KT2440]
                           600
                           56.00
                           72.66
                           12
                           1616.0
     

     






      

          
GC ORFID: 43570How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5484Glimmer Score: 

          
Start: 5711294Stop: 5713081

          
Length: 1788


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5484 translation of PA5484Homolog Bit Score 1127.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3180 (ORF: BLASTX 656.0), t_PA5484 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATGCCGCTGCCGATGAAGCTCCGGACCCGGTTGTTCCTCAGCATTTCCGCGCTGATCACCGTCTCG 
CTGTTCGGCCTGTTGCTCGGGTTGTTCAGCGTGATGCAGCTCGGCCGCGCTCAGGAGCAACGGATGTCGCAC 
CACCACGCGACCATCGAGGTGAGCCAGCAGTTGCGCCAGCTGCTCGGCGACCAGTTGGTCATACTGCTCCGC 
GAAAAACCCGACGGGCAGGCCCTGGAGCGCTCGCAGAACGATTTCCGACGGGTCCTGGAACAGGGTCGGGCG 
AATACCGTCGACGGCGCCGAGCAGGCCGCCCTGGATGGCGTTCGCGACGCCTACCTGCAACTGCAGGCGCAC 
ACCCCGGCGCTGCTCAAGGCGCCCATGGCCGACAACGACGGCTTCAGCGAAGCCTTCAATACCCTGCGCCTG 
CGCCTGCAGGACCTGCAGCAACTGGCGCTGGCCGGCATCAGCGACGCCGAGACCAGCGCCCGCCACCGAGCC 
TACCTGGTCGCCGGCCTGCTTGGCCTGGTGGGCGTCGCCATCCTGCTGATCGGTtTCGTCACCGCCCACAGC 
ATCGCCCGGCGCTTCGGCGCACCGATCGAAACCCTGGCGCGGGCGGCGGACAGGATCGGCGAAGGCGATTTC 
GACGTGACCCTGCCGATGACCAACGTCGCCGAGGTCGGCCAGTTGACCCGGCGTTTCGGCCTGATGGCCGAG 
GCCCTGCGGCAGTACCGCAAGACCAGCGTCGAAGAGGTGCTTTCCGGCGAGCGGCGCCTGCAGGCGGTACTC 
GACAGCATCGACGACGGCCTGGTGATCTTCGACAACCAGGGGCGCATCGAACACGCCAACCCGGTCGCGATC 
CGCCAGCTGTTCGTCTCCAACGACCCCCATGGCAAGCGGATCGACGAAATACTCAGCGATGTCGATGTCCAG 
GAAGCGGTGGAAAAGGCCCTGCTCGGCGAAGTCCAGGACGAGGCAATGCCCGACCTGGTGGTGGACGTCGCC 
GGCGAGTCGCGCCTGCTGGCCTGGTCGCTGTATCCGGTCACCCATCCCGGCGGGCATAGCGTCGGCGCGGTG 
CTGGTGGTCCGCGACGTGACCGAGCAGCGCGCCTTCGAACGGGTCCGCAGCGAATTCGTCCTGCGCGCCTCC 
CACGAACTGCGCACGCCGGTGACCGGCATGCAGATGGCCTTCAGCCTGCTCCGCGAACGCCTGGACTTCCCC 
GCGGAGTCACGGGAAGCGGACCTGATCCAGACGGTGGACGAAGAGATGTCGCGGCTGGTCCTGCTGATCAAC 
GACCTGTTGAACTTCTCGCGCTACCAGACCGGCATGCAGAAGCTCGAACTGGCTTCCTGCGACCTCGTCGAC 
CTGCTCACCCAGGCGCAGCAGCGTTTCACTCCCAAGGGCGAGGCCCGCCGGGTCTCGCTGCAACTGGAGCTG 
GGCGATGAGCTGCCGCGCCTGCAGCTCGATCGCCTGCAGATCGAGCGGGTGATCGACAACCTGCTGGAAAAC 
GCCCTGCGCCATAGCAGCGAAGGCGGGCAGATCCACCTGCAGGCCCGGCGCCAGGGCGACCGGGTGCTGATC 
GCGGTGGAAGACAATGGCGAAGGCATTCCCTTCAGCCAGCAAGGACGGATCTTCGAGCCTTTCGTCCAGGTC 
GGACGCAAGAAGGGCGGCGCCGGCCTCGGCCTGGCGCTGTGCAAGGAAATCATCCAGCTGCATGGCGGGCGC 
ATCGCGGTGCGCTCGCAACCGGGCCAGGGCGCGCGCTTCTACATGCTGCTGCCGGTGTGA