ViewGene
Locus Name:
GeneID:
Location:

GeneID:567
TrivialName: PA14_16330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16330
PAO1 Ortholog Locus:PA3716
Sequence Length:1707
Protein Length:568
Start: 1394310
Stop: 1396016
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07103.1|AE004790_8 (AE004790) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 562/568 (98%), Positives = 563/568 (99%)
Sequence:
ATGCAAAGACTGTCGCGTATCGGCCGCAACACCCTCGCCGTCTCCGTTTCCACCTTGCTCCTCAGCGCCTGC
AACCAGGGCGACGATGCGCCGAAGCCTGCGGCGGTCGCGCCGCAACCGGCCGCACCGAGCATGGCTGCACTG
AGCATCCCGCTATGCCTCAACGGCCAGTGCGCGGTGATCGACCAGGACGCCAAGCTGCTCGTGCCGTTCGAC
AACGACTACGACAATATCGTCGCCAGCGCCTACCAGGGCACCCTGATGGCGGCGCGCGAGGAGCGCTGGAAC
CTGATCCAGGCGAAGGACGGCAAGGTGTTGCGCGACGATATCGGCGAAGCCCTGTCGCTGCTCACCCCCGAC
CTCTATGGCTTCGTCCGCGACGGCAAGTACGGCGTGGTCGACGGCCAGGGCAAGGAAGTCCAGGCGCCGCGT
TTCGACGACATCTACCCCAACAGTGCCAACGAATTCATCATCTACGAGATCGATGGCAAGCGCGGCATCCTC
GATGCCAAGGGCAAGCAGCTCACCGAGGCGCTCTACGACACCACCCTGGTCAACGGCAGCGTCGCCGAACAC
GGCGGCTTGATCAGCGCCGAGCGTGGCGAGGAGAAGTGGATCATCAACCTCGCCACCGGCGAACAGAAGGCC
GTGGCCTACGAGAGCCTGGGCGACCTCCACGACGGCGTGATGAGCGCCAGCGTCATCGGCAAGGGCTCCCAA
CTGGTGGATGCCAAGGGCGACGTGGTCGGTGACGGCAAGAGCTACGATTACCTGGGCACCCCGGCCAACGGC
CTGGTGGCGTTCCGCGAGAAGTACGACAGCCCCTGTGGCTACCTCGACTACCAGGGCAAGGTGGTGATCGCC
GCCCAGTTCGCCGGTTGCGGCGCCTTCGGCAAGCAGGGCGGGCTGGCCCAGCAGCGCATGGAAGATGGCTCG
TCGGGCAAGTACGGCCTGATCGATCGCAGCGGCGCCTGGAAGGTGCAGCCGCAGTACGATTCGGCCGACAGC
GCCGGCCTCACCGCGCTTGGCTACACCGTCGACGTGCCCGGGCTGGCTGCCGTCGGCGTGAGCACCGGCCTG
TTCAGCGCCGACTTCGGCATCTTCAACCTCGACGAAGGCAGCGAGTGGGTGAAGCCGGGTTATGCGCAGATC
GGCGCGCTGGGCAACGACCTGTTCGTCGTGGCGAAGAAGGGCGGGCCGCAGAAGACCGTCAGCTTCATGGGT
TCGGAAAGCCAGGTGCCGGTGGTGGGCCTGATGGACCGCAGCGGCAAGATGCTGCTGGAGCCGGGCGAACTG
ATCAGCATCCAGTCTGCGTATGACGGTCGTTTCCTGGAAGCTCTCGACGGTATGGACAACGCTGCCCACACC
GTGTTGCTCGATCGCCAGGGACGCACGCTGGTTCCGGCGCTCTGGCAGAAGCTGGAGGTGAATCCGCAGCAG
GGTTACATCCTGGGCTACGAAGTCAGCGGCACTGGCGACGAGGCGACGGAAACCTTGCGCGCACTGTACGAC
CTGAACGGCAAGCCGCGCTTCACCGTGGCCACCACCGATTGCGGCGCCGAACAGTTGCTCGACGGCAATGGC
AAGGCGATCTGGCCGCAGGACCCGACGCCGTATTGCCAGTCGGACGACGAGCAGGGCGACGAAGGCGAGCCG
GAGCAGGAGCCGGCGCCCGCCGAAGAGAGCGAGGAAACCAGCGAGAGCTGA
Translation:
MQRLSRIGRNTLAVSVSTLLLSACNQGDDAPKPAAVAPQPAAPSMAALSIPLCLNGQCAVIDQDAKLLVPFD
NDYDNIVASAYQGTLMAAREERWNLIQAKDGKVLRDDIGEALSLLTPDLYGFVRDGKYGVVDGQGKEVQAPR
FDDIYPNSANEFIIYEIDGKRGILDAKGKQLTEALYDTTLVNGSVAEHGGLISAERGEEKWIINLATGEQKA
VAYESLGDLHDGVMSASVIGKGSQLVDAKGDVVGDGKSYDYLGTPANGLVAFREKYDSPCGYLDYQGKVVIA
AQFAGCGAFGKQGGLAQQRMEDGSSGKYGLIDRSGAWKVQPQYDSADSAGLTALGYTVDVPGLAAVGVSTGL
FSADFGIFNLDEGSEWVKPGYAQIGALGNDLFVVAKKGGPQKTVSFMGSESQVPVVGLMDRSGKMLLEPGEL
ISIQSAYDGRFLEALDGMDNAAHTVLLDRQGRTLVPALWQKLEVNPQQGYILGYEVSGTGDEATETLRALYD
LNGKPRFTVATTDCGAEQLLDGNGKAIWPQDPTPYCQSDDEQGDEGEPEQEPAPAEESEETSES*
AnnotationID:576GeneID:567
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 07:07:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3716
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:1137




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18279




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:567
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
974
                           PA3716_tr
                           translation of PA3716
                           568
                           98.94
                           99.11
                           0
                           2915.0
     

     
     
38589
                           gb|AAG07103.1|AE004790_8
                           (AE004790) hypothetical protein PA3716 [Pseudomonas aeruginosa PAO1]
                           568
                           98.94
                           99.11
                           0
                           2915.0
     

     






      

          
GC ORFID: 43569How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3716Glimmer Score: 

          
Start: 3559627Stop: 3557921

          
Length: 1707


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3716 translation of PA3716Homolog Bit Score 1127.0

          
Other Homologs:  t_PA3716 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAAGACTGTCGCGTATCGGCCGCAACACCCTCGCCGTCTCCGTTTCCACCTTGCTCCTCAGCGCCTGC 
AACCAGGGCGACGATGCGCCGAAGCCTGCGGCGGTCGCGCCGCAACCGGCCGCACCGAGCATGGCTGCACTG 
AGCATCCCGCTATGCCTCAACGGCCAGTGCGCGGTGATCGACCAGGACGCCAAGCTGCTCGTGCCGTTCGAC 
AACGACTACGACAATATCGTCGCCAGCGCCTACCAGGGCACCCTGATGGCGGCGCGCGAGGAGCGCTGGAAC 
CTGATCCAGGCGAAGGACGGCAAGGTGTTGCGCGACGATATCGGCGAAGCCCTGTCGCTGCTCACCCCCGAC 
CTCTATGGCTTCGTCCGCGACGGCAAGTACGGCGTGGTCGACGGCCAGGGCAAGGAAGTCCAGGCGCCGCGT 
TTCGACGACATCTACCCCAACAGTGCCAACGAATTCATCATCTACGAGATCGATGGCAAGCGCGGCATCCTC 
GATGCCAAGGGCAAGCAGCTCACCGAGGCGCTCTACGACACCACCCTGGTCAACGGCAGCGTCGCCGAACAC 
GGCGGCTTGATCAGCGCCGAGCGTGGCGAGGAGAAGTGGATCATCAACCTCGCCACCGGCGAACAGAAGGCC 
GTGGCCTACGAGAGCCTGGGCGACCTCCACGACGGCGTGATGAGCGCCAGCGTCATCGGCAAGGGCTCCCAA 
CTGGTGGATGCCAAGGGCGACGTGGTCGGTGACGGCAAGAGCTACGATTACCTGGGCACCCCGGCCAACGGC 
CTGGTGGCGTTCCGCGAGAAGTACGACAGCCCCTGTGGCTACCTCGACTACCAGGGCAAGGTGGTGATCGCC 
GCCCAGTTCGCCGGTTGCGGCGCCTTCGGCAAGCAGGGCGGGCTGGCCCAGCAGCGCATGGAAGATGGCTCG 
TCGGGCAAGTACGGCCTGATCGATCGCAGCGGCGCCTGGAAGGTGCAGCCGCAGTACGATTCGGCCGACAGC 
GCCGGCCTCACCGCGCTTGGCTACACCGTCGACGTGCCCGGGCTGGCTGCCGTCGGCGTGAGCACCGGCCTG 
TTCAGCGCCGACTTCGGCATCTTCAACCTCGACGAAGGCAGCGAGTGGGTGAAGCCGGGTTATGCGCAGATC 
GGCGCGCTGGGCAACGACCTGTTCGTCGTGGCGAAGAAGGGCGGGCCGCAGAAGACCGTCAGCTTCATGGGT 
TCGGAAAGCCAGGTGCCGGTGGTGGGCCTGATGGACCGCAGCGGCAAGATGCTGCTGGAGCCGGGCGAACTG 
ATCAGCATCCAGTCTGCGTATGACGGTCGTTTCCTGGAAGCTCTCGACGGTATGGACAACGCTGCCCACACC 
GTGTTGCTCGATCGCCAGGGACGCACGCTGGTTCCGGCGCTCTGGCAGAAGCTGGAGGTGAATCCGCAGCAG 
GGTTACATCCTGGGCTACGAAGTCAGCGGCACTGGCGACGAGGCGACGGAAACCTTGCGCGCACTGTACGAC 
CTGAACGGCAAGCCGCGCTTCACCGTGGCCACCACCGATTGCGGCGCCGAACAGTTGCTCGACGGCAATGGC 
AAGGCGATCTGGCCGCAGGACCCGACGCCGTATTGCCAGTCGGACGACGAGCAGGGCGACGAAGGCGAGCCG 
GAGCAGGAGCCGGCGCCCGCCGAAGAGAGCGAGGAAACCAGCGAGAGCTGA