ViewGene
Locus Name:
GeneID:
Location:

GeneID:566
TrivialName: PA14_16220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16220
PAO1 Ortholog Locus:PA3725
Sequence Length:1716
Protein Length:571
Start: 1385519
Stop: 1387234
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07112.1|AE004791_9 (AE004791) single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa PAO1]
Identities = 570/571 (99%), Positives = 571/571 (100%)
Sequence:
ATGCGTATCGAACCCCGCCCCCTGCCCGAAACCCTGCCCGATCTCGGCGACCTTCCGCCATTGCTGGCACGC
CTGTACGCAGCTCGTGGCGTGCGTTGCGCCGAGGAGCTGGACAAGGGCCTGGCGCGGCTGATTCCCTTCCAG
CGGCTGAAAGGCATCGAGGAGGGCGTGGCGCTGCTGGTGGATGCCCTGGAGGGCGGCCAGCGGATTCTCATC
GTCGGCGACTTCGACGCCGACGGCGCCACCGCCAGCAGCGTCGGCGTGCTGGCCCTGCGCATGCTCGGCGCG
GCCTGGGTCGATTACCTGGTGCCGAACCGCTTCGAGTACGGCTACGGCCTGACCCCGGAGATCGTCGGCGTG
GCCCTGGAGAAGCGTCCCGACCTGCTGGTGACGGTGGACAACGGTATCTCCAGCGTGGACGGCGTCCAGGCG
GCGAAAGCCGCGGGGCTCAAGGTGCTGGTCACCGACCACCACCTGCCTGGCCCGGAACTGCCGGCGGCGGAT
GCGATCATCAACCCCAACCAGCCGGGCTGCGAATTCCCCAGCAAGGCCATGGCCGGGGTCGGGGTGATCTTC
TATGTGATGCTGGCGTTGCGGGCGCGCCTGCGCGAGCTGGACTGGTTCGCCCGGCGCGGGCTGAAGGAACCG
AACCTCGCCGAGCTGCTCGACCTGGTGGCGCTGGGCAGCGTCGCCGATGTGGTGCCGCTCGATGCCAACAAC
CGCATCCTGGTCCACCAGGGCCTCGCGCGCATCCGCGCCGGCCGCGCCCGGCCGGGCTTGCGCGCGCTGCTG
GAGGTGGCCGGGCGGCCTCCGGTACGGATCACCTCCACCGACCTGGGTTTCATCCTCGGTCCGCGCCTGAAC
GCGGCGGGTCGGCTCGACGACATGTCTCTCGGCATCGAATGCCTGCTCTGCGACGACGAAGCGCTGGCCCGC
GACATGGCGGTGCAGCTCGACCAGTTGAACCAGGACCGCAAGGCCATCGAGCAGGGTATGCAGCGCGAGGCG
CTGGCGCAGCTCAAGGAGCTGAGCCTGGAGCAACTGCCGTTCGGCTTGTGCCTGTTCGACGCCGACTGGCAC
CAGGGCGTGATCGGAATCCTCGCCTCGCGCCTGAAGGAGCGTTACCACCGGCCGACCATCGCCTTCGCCGAC
GCCGGCGACGGCAGCCTGAAAGGCTCGGCACGGTCGATTCCCGGCTTCCACATCCGCGACGCGCTGGACGCG
GTAGCCGCCCGTCATCCCGGGCTGATCAGCAAGTTCGGCGGCCACGCGATGGCTGCCGGACTATCGTTGCCG
CAGGAAAACTTCGGCGCTTTCTCCGCCGCCTTCGATGCCGAAGTACGCCGCCAACTGGCCGAGGAGGACCTG
GCCGGGCGCCTGCTCTCCGATGGCCAGTTGAGCATCCAGGAGTTCCACCTGGAGCTGGCGCGCGCGTTGCGC
CAGGCAGGTCCCTGGGGCCAGCACTTTCCCGAGCCGATGTTCCACGGGGTGTTCCAGCTGGTGCAGCAGCGG
ATCGTCGGCGAGCGTCACCTGAAGCTGGTGCTGAAAAGCGAATGCGGCTCGCTGCAACTGGATGGCATTGCC
TTCAACATCGACCGCGAGCAGTGGCCCAACCCTACCGTGCGCTGGGCCGAGCTGGCCTACAAGCTCGACGTC
AACGAATTCCGCGGCCAGGAAAGCGTGCAACTGATGATCGTCCACATGGCCCCTCGCTGA
Translation:
MRIEPRPLPETLPDLGDLPPLLARLYAARGVRCAEELDKGLARLIPFQRLKGIEEGVALLVDALEGGQRILI
VGDFDADGATASSVGVLALRMLGAAWVDYLVPNRFEYGYGLTPEIVGVALEKRPDLLVTVDNGISSVDGVQA
AKAAGLKVLVTDHHLPGPELPAADAIINPNQPGCEFPSKAMAGVGVIFYVMLALRARLRELDWFARRGLKEP
NLAELLDLVALGSVADVVPLDANNRILVHQGLARIRAGRARPGLRALLEVAGRPPVRITSTDLGFILGPRLN
AAGRLDDMSLGIECLLCDDEALARDMAVQLDQLNQDRKAIEQGMQREALAQLKELSLEQLPFGLCLFDADWH
QGVIGILASRLKERYHRPTIAFADAGDGSLKGSARSIPGFHIRDALDAVAARHPGLISKFGGHAMAAGLSLP
QENFGAFSAAFDAEVRRQLAEEDLAGRLLSDGQLSIQEFHLELARALRQAGPWGQHFPEPMFHGVFQLVQQR
IVGERHLKLVLKSECGSLQLDGIAFNIDREQWPNPTVRWAELAYKLDVNEFRGQESVQLMIVHMAPR*
AnnotationID:575GeneID:566
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 08:08:27
Gene Name:recJ
Confidence Code:2
GeneProduct:single-stranded-DNA-specific exonuclease RecJ
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0608
Secondary Functional Category(ies):
EC Number:3.1.-.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55009.1| (AE016861) single-stranded-DNA-specific exonuclease RecJ
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 569

 Score =  944 bits (2440), Expect = 0.0
 Identities = 466/571 (81%), Positives = 518/571 (90%), Gaps = 2/571 (0%)

>gb|AAN81920.1|AE016766_8 (AE016766) Single-stranded-DNA-specific exonuclease recJ
           [Escherichia coli CFT073]
          Length = 577

 Score =  661 bits (1706), Expect = 0.0
 Identities = 335/572 (58%), Positives = 432/572 (75%), Gaps = 2/572 (0%)








 
Structural Features:
COG0608, RecJ, Single-stranded DNA-specific exonuclease 
[DNA replication, recombination, and repair]
CD-Length = 491 residues,  97.4% aligned
Score =  409 bits (1051), Expect = 1e-114
Identities = 218/508 (42%), Positives = 301/508 (59%), Gaps = 32/508 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1135




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18277




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31830




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:566_cdd.html


    		




 
URL:

















    ReferenceID:34254




  
Author/Investigator(s):
        Lovett ST, Kolodner RD.





  
Title:
        Nucleotide sequence of the Escherichia coli recJ chromosomal region and construction of recJ-overexpression plasmids.




  
PubMed:
        1987126


MedLine:
        




    
Source:
J Bacteriol. 1991 Jan;173(1):353-64.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1987126









           
Homologs By Global Alignment 

           

       



     
Gene ID:566
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
973
                           PA3725_tr
                           translation of PA3725
                           571
                           99.82
                           99.99
                           0
                           2916.0
     

     
     
38545
                           gb|AAG07112.1|AE004791_9
                           (AE004791) single-stranded-DNA-specific exonuclease RecJ [Pseudomonas aeruginosa PAO1]
                           571
                           99.82
                           99.99
                           0
                           2916.0
     

     
     
38547
                           gb|AAN67099.1|AE016338_9
                           (AE016779) single-stranded-DNA-specific exonuclease RecJ [Pseudomonas putida KT2440]
                           571
                           82.48
                           90.54
                           2
                           2438.0
     

     
     
38546
                           gb|AAO55009.1|
                           (AE016861) single-stranded-DNA-specific exonuclease RecJ [Pseudomonas syringae pv. tomato str. DC3000]
                           571
                           81.61
                           90.71
                           2
                           2442.0
     

     
     
38548
                           gb|AAN54026.1|AE015540_6
                           (AE015540) single-stranded-DNA-specific exonuclease RecJ [Shewanella oneidensis MR-1]
                           580
                           60.34
                           75.86
                           15
                           1777.0
     

     






      

          
GC ORFID: 43568How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3725Glimmer Score: 

          
Start: 3568418Stop: 3566703

          
Length: 1716


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3725 translation of PA3725Homolog Bit Score 1127.0

          
Other Homologs:  t_PA3725 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTATCGAACCCCGCCCCCTGCCCGAAACCCTGCCCGATCTCGGCGACCTTCCGCCATTGCTGGCACGC 
CTGTACGCAGCTCGTGGCGTGCGTTGCGCCGAGGAGCTGGACAAGGGCCTGGCGCGGCTGATTCCCTTCCAG 
CGGCTGAAAGGCATCGAGGAGGGCGTGGCGCTGCTGGTGGATGCCCTGGAGGGCGGCCAGCGGATTCTCATC 
GTCGGCGACTTCGACGCCGACGGCGCCACCGCCAGCAGCGTCGGCGTGCTGGCCCTGCGCATGCTCGGCGCG 
GCCTGGGTCGATTACCTGGTGCCGAACCGCTTCGAGTACGGCTACGGCCTGACCCCGGAGATCGTCGGCGTG 
GCCCTGGAGAAGCGTCCCGACCTGCTGGTGACGGTGGACAACGGTATCTCCAGCGTGGACGGCGTCCAGGCG 
GCGAAAGCCGCGGGGCTCAAGGTGCTGGTCACCGACCACCACCTGCCTGGCCCGGAACTGCCGGCGGCGGAT 
GCGATCATCAACCCCAACCAGCCGGGCTGCGAATTCCCCAGCAAGGCCATGGCCGGGGTCGGGGTGATCTTC 
TATGTGATGCTGGCGTTGCGGGCGCGCCTGCGCGAGCTGGACTGGTTCGCCCGGCGCGGGCTGAAGGAACCG 
AACCTCGCCGAGCTGCTCGACCTGGTGGCGCTGGGCAGCGTCGCCGATGTGGTGCCGCTCGATGCCAACAAC 
CGCATCCTGGTCCACCAGGGCCTCGCGCGCATCCGCGCCGGCCGCGCCCGGCCGGGCTTGCGCGCGCTGCTG 
GAGGTGGCCGGGCGGCCTCCGGTACGGATCACCTCCACCGACCTGGGTTTCATCCTCGGTCCGCGCCTGAAC 
GCGGCGGGTCGGCTCGACGACATGTCTCTCGGCATCGAATGCCTGCTCTGCGACGACGAAGCGCTGGCCCGC 
GACATGGCGGTGCAGCTCGACCAGTTGAACCAGGACCGCAAGGCCATCGAGCAGGGTATGCAGCGCGAGGCG 
CTGGCGCAGCTCAAGGAGCTGAGCCTGGAGCAACTGCCGTTCGGCTTGTGCCTGTTCGACGCCGACTGGCAC 
CAGGGCGTGATCGGAATCCTCGCCTCGCGCCTGAAGGAGCGTTACCACCGGCCGACCATCGCCTTCGCCGAC 
GCCGGCGACGGCAGCCTGAAAGGCTCGGCACGGTCGATTCCCGGCTTCCACATCCGCGACGCGCTGGACGCG 
GTAGCCGCCCGTCATCCCGGGCTGATCAGCAAGTTCGGCGGCCACGCGATGGCTGCCGGACTATCGTTGCCG 
CAGGAAAACTTCGGCGCTTTCTCCGCCGCCTTCGATGCCGAAGTACGCCGCCAACTGGCCGAGGAGGACCTG 
GCCGGGCGCCTGCTCTCCGATGGCCAGTTGAGCATCCAGGAGTTCCACCTGGAGCTGGCGCGCGCGTTGCGC 
CAGGCAGGTCCCTGGGGCCAGCACTTTCCCGAGCCGATGTTCCACGGGGTGTTCCAGCTGGTGCAGCAGCGG 
ATCGTCGGCGAGCGTCACCTGAAGCTGGTGCTGAAAAGCGAATGCGGCTCGCTGCAACTGGATGGCATTGCC 
TTCAACATCGACCGCGAGCAGTGGCCCAACCCTACCGTGCGCTGGGCCGAGCTGGCCTACAAGCTCGACGTC 
AACGAATTCCGCGGCCAGGAAAGCGTGCAACTGATGATCGTCCACATGGCCCCTCGCTGA