ViewGene

Locus Name:
GeneID:
Location:

GeneID:565
TrivialName: PA14_16390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16390
PAO1 Ortholog Locus:PA3710
Sequence Length:1674
Protein Length:557
Start: 1401977
Stop: 1403650
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07097.1|AE004790_2 (AE004790) probable GMC-type oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 555/557 (99%), Positives = 555/557 (99%)
Sequence:
ATGCCCGAGGTACTGGATACCTACGACTACCTCATCGTCGGCGCCGGACCTGCCGGCTGCCTGCTGGCCAAC
CGGCTTTCCGCCGACCCTGCCAACCGTGTCCTGCTGCTGGAAGCCGGCGGTCCGGACAACTATCCCTGGATC
CACATTCCCGTCGGCTACCTCTACTGCATCGGCAACCCGCGTACCGACTGGTGCTTCGACACCGACGAGGTC
CCCGGGCTCAACGGTCGTTCCCTGAAGTACCCGCGCGGCAAGGTGCTCGGAGGATGCTCCTCGATCAATGGC
ATGATCTACATGCGTGGCCAGGCCCGCGACTACGACCAGTGGGTGGCCGAAGGCAATCCGGGCTGGAGCTGG
AGAGAGCTGCTGCCGCTGTTCCGCAGGATGGAGGACCATTTCGCCGGGACCAGCGAAATGCACGGCGCCGGC
GGCGAATGGCGGGTAGAACGCCAGCGGCTCTCCTGGAAGCTGCTCGATGCCTTCCAGCAGGCGGCGGCGCAG
ACCGGAATCGCCAGCGTCGAGGATTTCAACGGTGGCGACAACGAAGGCTGCGGCTACTTCCAGGTCAACCAG
CGCGGCGGGGTGCGCTGGAATGCCTCGAAAGGCTTCCTGCGCGGCATCGCCCAGCGCGCCAACCTGACGGTT
CTGACCCATGCCGAAGTCCAGCGGGTGCTCCTCGAGGACGGCCGCGCCAGGGCCCTGTCGGTCCGTTGGCAG
GGCCGCGAGCAGCGCTTCGAGGCGCGCCGCGAGATCGTCCTGAGCGCTGGCGCGATCGGTTCGCCGTGCCTG
CTGCAACGCTCCGGGATCGGCCCGCGGGACCTGCTGGAGCGGCTCGGTGCCGGGGTCGTCCACGAGTTGCCC
GGGGTCGGCGGTAACCTCCAGGATCACCTGCAACTGCGCATGATCTACAAGGTCGACGGCGTTCCCACCCTC
AACCAGATCGCCGGCAGCCTATGGGGCAAGCTGGGCATGGGCCTGCGCTACCTGGCGAGCCGCAGCGGGCCG
TTGTCGATGGCGCCGAGCCAACTGGGCGCCTTCGCCCGCTCCGATCCGCAGCAGCCCTCGGCCAACCTCGAA
TACCACGTCCAGCCGCTCTCGCTGGATCGCTTCGGCGAGCCGCTGCATGCCTTCCCGGCGTTCACCGCGTCG
GTCTGCGACCTGCGTCCGCACAGCCGGGGAACGGTGCGCATCCGCTCGCTCGACCCGGGCGAGGCGCCGTCG
ATCCAGCCCAACTACCTGAGCGATCCGCGCGACCTGAAGGTCGCTGCCGACGCCATACGCCTGACCCGCCGC
ATCGCCGCCGCGCCGGCGCTGGCCGCCTTCCGTCCGCAGGAGTACAAGCCCGGCCCGGAATACCGCAGCGAA
GAGGATCTGCAGCGCGCCGCGGCGGAGATCGGCACCACCATCTTCCACCCTGCCGGCACCTGCCGCATGGGC
CAGGGGCCGCAAGCGGTGGTGGATGCGCAATTGAGGGTGCACGGAATCCCCGGCCTGCGTATCGCCGATGCC
TCGATCATGCCCAGCCTGACCTCCGGCAACACCTGTTCGCCGGTGCTGGTGATCGCCGAGAAGGCGGCGCAG
ATGATTCTCGCCGAGCGCCGCCGCGAGGCCGCGCCGCAGGTCGTCGAAAGCGCCATGGCTACCGGCGGCAAG
GAGGCGGTGGAGGCCTGA
Translation:
MPEVLDTYDYLIVGAGPAGCLLANRLSADPANRVLLLEAGGPDNYPWIHIPVGYLYCIGNPRTDWCFDTDEV
PGLNGRSLKYPRGKVLGGCSSINGMIYMRGQARDYDQWVAEGNPGWSWRELLPLFRRMEDHFAGTSEMHGAG
GEWRVERQRLSWKLLDAFQQAAAQTGIASVEDFNGGDNEGCGYFQVNQRGGVRWNASKGFLRGIAQRANLTV
LTHAEVQRVLLEDGRARALSVRWQGREQRFEARREIVLSAGAIGSPCLLQRSGIGPRDLLERLGAGVVHELP
GVGGNLQDHLQLRMIYKVDGVPTLNQIAGSLWGKLGMGLRYLASRSGPLSMAPSQLGAFARSDPQQPSANLE
YHVQPLSLDRFGEPLHAFPAFTASVCDLRPHSRGTVRIRSLDPGEAPSIQPNYLSDPRDLKVAADAIRLTRR
IAAAPALAAFRPQEYKPGPEYRSEEDLQRAAAEIGTTIFHPAGTCRMGQGPQAVVDAQLRVHGIPGLRIADA
SIMPSLTSGNTCSPVLVIAEKAAQMILAERRREAAPQVVESAMATGGKEAVEA*
AnnotationID:574GeneID:565
AnnotatorUID: danlee
Modification Date/Time: 2006-04-07 14:02:13
Gene Name:
Confidence Code:3
GeneProduct:putative glucose-methanol-choline oxidoreductase
Cell Localization:()
Synonyms:PA3710
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2303,KOG1238,pfam00732
Secondary Functional Category(ies):carbon compound metabolism
EC Number:1.1.99.1
Status:ACTIVE
Pathway:
Betaine biosynthesis from choline; first step.
Homology:
>gb|AAN65690.1|AE016196_1 (AE016774) oxidoreductase, GMC family [Pseudomonas putida KT2440]
          Length = 550

 Score =  816 bits (2107), Expect = 0.0
 Identities = 391/531 (73%), Positives = 440/531 (82%)

>emb|CAC47556.1| (AL591792) PUTATIVE ALCOHOL DEHYDROGENASE PROTEIN [Sinorhizobium
           meliloti]
          Length = 531

 Score =  710 bits (1833), Expect = 0.0
 Identities = 340/531 (64%), Positives = 411/531 (77%)

>gb|AAN34129.1|AE014589_6 (AE014589) oxidoreductase, GMC family [Brucella suis 1330]
          Length = 532

 Score =  689 bits (1777), Expect = 0.0
 Identities = 331/530 (62%), Positives = 406/530 (76%)
Structural Features:
COG2303, BetA, Choline dehydrogenase and related flavoproteins 
[Amino acid transport and metabolism]
CD-Length = 542 residues,  99.3% aligned
Score =  511 bits (1317), Expect = 2e-145
Identities = 243/544 (44%), Positives = 308/544 (56%), Gaps = 15/544 (2%)

KOG1238, Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase
CD-Length = 542 residues,  99.3% aligned
Score =  511 bits (1317), Expect = 2e-145
Identities = 215/577 (37%), Positives = 292/577 (50%), Gaps = 44/577 (7%)

pfam00732, GMC_oxred_N, GMC oxidoreductase. 
CD-Length = 291 residues, 100.0% aligned
Score =  286 bits (734), Expect = 8e-78
Identities = 131/291 (45%), Positives = 176/291 (60%), Gaps = 7/291 (2%)
Genomic Context:
Comment:
ReferenceID:1133
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18275
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31841
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:565_cdd.html
URL:
Homologs By Global Alignment
Gene ID:565

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
971 PA3710_tr translation of PA3710 557 99.64 99.64 0 2915.0
38501 gb|AAG07097.1|AE004790_2 (AE004790) probable GMC-type oxidoreductase [Pseudomonas aeruginosa PAO1] 557 99.64 99.64 0 2915.0
38502 gb|AAN65690.1|AE016196_1 (AE016774) oxidoreductase, GMC family [Pseudomonas putida KT2440] 561 70.58 79.85 15 2106.0
38503 emb|CAE30612.1| (BX640437) putative dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 564 66.66 76.24 29 1946.0
38504 emb|CAE39852.1| (BX640423) putative dehydrogenase [Bordetella parapertussis] 564 66.31 75.88 29 1935.0
GC ORFID: 43567How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3710Glimmer Score:
Start: 3551960Stop: 3550287
Length: 1674
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3710 translation of PA3710Homolog Bit Score 1127.0
Other Homologs: t_PA4100 (ORF: BLASTX 402.0), t_PA3710 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCGAGGTACTGGATACCTACGACTACCTCATCGTCGGCGCCGGACCTGCCGGCTGCCTGCTGGCCAAC
CGGCTTTCCGCCGACCCTGCCAACCGTGTCCTGCTGCTGGAAGCCGGCGGTCCGGACAACTATCCCTGGATC
CACATTCCCGTCGGCTACCTCTACTGCATCGGCAACCCGCGTACCGACTGGTGCTTCGACACCGACGAGGTC
CCCGGGCTCAACGGTCGTTCCCTGAAGTACCCGCGCGGCAAGGTGCTCGGAGGATGCTCCTCGATCAATGGC
ATGATCTACATGCGTGGCCAGGCCCGCGACTACGACCAGTGGGTGGCCGAAGGCAATCCGGGCTGGAGCTGG
AGAGAGCTGCTGCCGCTGTTCCGCAGGATGGAGGACCATTTCGCCGGGACCAGCGAAATGCACGGCGCCGGC
GGCGAATGGCGGGTAGAACGCCAGCGGCTCTCCTGGAAGCTGCTCGATGCCTTCCAGCAGGCGGCGGCGCAG
ACCGGAATCGCCAGCGTCGAGGATTTCAACGGTGGCGACAACGAAGGCTGCGGCTACTTCCAGGTCAACCAG
CGCGGCGGGGTGCGCTGGAATGCCTCGAAAGGCTTCCTGCGCGGCATCGCCCAGCGCGCCAACCTGACGGTT
CTGACCCATGCCGAAGTCCAGCGGGTGCTCCTCGAGGACGGCCGCGCCAGGGCCCTGTCGGTCCGTTGGCAG
GGCCGCGAGCAGCGCTTCGAGGCGCGCCGCGAGATCGTCCTGAGCGCTGGCGCGATCGGTTCGCCGTGCCTG
CTGCAACGCTCCGGGATCGGCCCGCGGGACCTGCTGGAGCGGCTCGGTGCCGGGGTCGTCCACGAGTTGCCC
GGGGTCGGCGGTAACCTCCAGGATCACCTGCAACTGCGCATGATCTACAAGGTCGACGGCGTTCCCACCCTC
AACCAGATCGCCGGCAGCCTATGGGGCAAGCTGGGCATGGGCCTGCGCTACCTGGCGAGCCGCAGCGGGCCG
TTGTCGATGGCGCCGAGCCAACTGGGCGCCTTCGCCCGCTCCGATCCGCAGCAGCCCTCGGCCAACCTCGAA
TACCACGTCCAGCCGCTCTCGCTGGATCGCTTCGGCGAGCCGCTGCATGCCTTCCCGGCGTTCACCGCGTCG
GTCTGCGACCTGCGTCCGCACAGCCGGGGAACGGTGCGCATCCGCTCGCTCGACCCGGGCGAGGCGCCGTCG
ATCCAGCCCAACTACCTGAGCGATCCGCGCGACCTGAAGGTCGCTGCCGACGCCATACGCCTGACCCGCCGC
ATCGCCGCCGCGCCGGCGCTGGCCGCCTTCCGTCCGCAGGAGTACAAGCCCGGCCCGGAATACCGCAGCGAA
GAGGATCTGCAGCGCGCCGCGGCGGAGATCGGCACCACCATCTTCCACCCTGCCGGCACCTGCCGCATGGGC
CAGGGGCCGCAAGCGGTGGTGGATGCGCAATTGAGGGTGCACGGAATCCCCGGCCTGCGTATCGCCGATGCC
TCGATCATGCCCAGCCTGACCTCCGGCAACACCTGTTCGCCGGTGCTGGTGATCGCCGAGAAGGCGGCGCAG
ATGATTCTCGCCGAGCGCCGCCGCGAGGCCGCGCCGCAGGTCGTCGAAAGCGCCATGGCTACCGGCGGCAAG
GAGGCGGTGGAGGCCTGA