ViewGene

Locus Name:
GeneID:
Location:

GeneID:564
TrivialName: PA14_19190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19190
PAO1 Ortholog Locus:PA3471
Sequence Length:1695
Protein Length:564
Start: 1656387
Stop: 1658081
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06859.1|AE004768_4 (AE004768) probable malic enzyme [Pseudomonas aeruginosa PAO1]
Identities = 563/564 (99%), Positives = 564/564 (100%)
Sequence:
ATGACCGAAACAGCCAAGCGTCCCTTGTACGTTCCCCATGCCGGCCCTTCGCTGCTGGAGATGCCGCTGCTG
AACAAAGGCAGCGCGTTCAGTACCCAGGAACGCATCGATTTCAACCTGCAGGGCCTGCTGCCGCACAACATC
GAGACCATCGAGGAGCAGACCGAGCGCGCCTACAGCCAGTACAACCTGTGCAACACCGATCTGGACCGCCAC
ATCTTCCTGCGCTCGATCCAGGACAACAACGAGACCCTGTTCTTCCGCCTGCTCGAGGAGCACCTGGAAGAA
ATGATGCCGATCATCTACACCCCCACGGTCGGCCAGGCCTGCCAGGAGTTCTCGAAGATCTATCGGACCCAC
CGCGGCCTGTTCATCTCCTACCCGGACCGCGAGCGGATCGACGACATCCTGCGCAGCGCCACCAAGAACAAC
GTGAAGATCGTGGTGGTCACCGACAGCGAGCGGATCCTCGGCCTCGGCGACCAGGGCATCGGCGGGATGGGC
ATCCCGATCGGCAAGCTGTCGCTGTACACCGCCTGCGGCGGTATCAGCCCGGCCTACACCCTGCCGGTGGTG
CTGGACGTGGGCACCAACAACCCGGACCTGCTCAACGACCCGATGTACATGGGCTGGCGCCACGAGCGGGTG
AGCGGGGCGCAGTACGAGGAGTTCGTCGACCTGTTCATCCAGGCGATCAAGCGCCGCTGGCCCAACGTCCTG
CTGCAATTCGAGGACTTCGCCCAGACCAATGCCATGCCGTTGCTGGAGCGCTACAAGGACGAGCTGTGCTGC
TTCAACGACGACATCCAGGGCACCGCCGCGGTGGCCGTGGGCACCCTGCTGGCGGCTTGCAAGGCCAAGGGC
GAGAAGCTCAGCGAGCAGACCGTGACCTTCGTCGGCGCCGGCTCCGCCGGTTGCGGCATCGCCGAGCAGATC
ATCGCCGCCATGCAACTGGAGGGCCTGGACGAGGCCCAGGCGCGTCGGCGCATCTTCATGGTCGACCGCTGG
GGCCTGCTCACCGACGACATGAGCAACCTGCTTGACTTCCAGCACCGCCTGGCGCAGAAGCGCGCCGATCTC
GGTGCCTGGGGCGGCCAGCAGGGCGACGACCTGGCGTTGCTGGAAGTGATCCGCAATGCCCGGCCGACGGTG
CTGATCGGCGTCTCCGGGCAGCGCGGGCTGTTTTCCGAAGAGGTCATCCGCGAGCTGCACAGCCATTGCAAG
CAGCCGCTGGTGATGCCGCTGTCCAACCCGACCTCGCGGGTCGAGGCGACTCCGCAGGAAATCCTCAACTGG
ACCGACGGCCAGGCGCTGGTCGCCACCGGTAGCCCGTTCCAACCGGTGCAGGTGGGCGACAAGCGGATTCCC
ATCGCCCAGTGCAACAACGCCTATATCTTCCCCGGCATCGGCCTGGGGGTGATCGCCGCGCGGGCCAACCGG
GTCACCGAAGGCATGCTGATGGCCGCGGCCAACGCCCTGGCCAACTGCTCGCCGATCGTTACCCGGGGCGAG
GGCGCCGTGTTGCCGGCGCTGGGTGACATCCGCGAGGTCAGCAAGCGCATCGCCGTCGCCGTGGCCAAGCAG
GCCCAGGCCGAGGGCAAGGCCCTGCATACCAGCGACGAGGTATTGAACGACGCCATCGAGGCGAACTTCTGG
TTCCCGCGCTACCGTGCCTACCGCCGGACTTCGTTCTGA
Translation:
MTETAKRPLYVPHAGPSLLEMPLLNKGSAFSTQERIDFNLQGLLPHNIETIEEQTERAYSQYNLCNTDLDRH
IFLRSIQDNNETLFFRLLEEHLEEMMPIIYTPTVGQACQEFSKIYRTHRGLFISYPDRERIDDILRSATKNN
VKIVVVTDSERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNPDLLNDPMYMGWRHERV
SGAQYEEFVDLFIQAIKRRWPNVLLQFEDFAQTNAMPLLERYKDELCCFNDDIQGTAAVAVGTLLAACKAKG
EKLSEQTVTFVGAGSAGCGIAEQIIAAMQLEGLDEAQARRRIFMVDRWGLLTDDMSNLLDFQHRLAQKRADL
GAWGGQQGDDLALLEVIRNARPTVLIGVSGQRGLFSEEVIRELHSHCKQPLVMPLSNPTSRVEATPQEILNW
TDGQALVATGSPFQPVQVGDKRIPIAQCNNAYIFPGIGLGVIAARANRVTEGMLMAAANALANCSPIVTRGE
GAVLPALGDIREVSKRIAVAVAKQAQAEGKALHTSDEVLNDAIEANFWFPRYRAYRRTSF*
AnnotationID:573GeneID:564
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 10:10:46
Gene Name:
Confidence Code:3
GeneProduct:putative NAD-linked malate dehydrogenase
Cell Localization:()
Synonyms:sfcA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03949,pfam00390,COG0281
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57390.1| (AE016870) malate dehydrogenase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 573

 Score =  867 bits (2240), Expect = 0.0
 Identities = 422/560 (75%), Positives = 490/560 (87%)

>gb|AAL20484.1| (AE008768) NAD-linked malate dehydrogenase [Salmonella typhimurium
           LT2]
          Length = 565

 Score =  776 bits (2005), Expect = 0.0
 Identities = 382/562 (67%), Positives = 455/562 (80%), Gaps = 1/562 (0%)

>gb|AAN80371.1|AE016760_230 (AE016760) NAD-dependent malic enzyme [Escherichia coli CFT073]
          Length = 574

 Score =  767 bits (1980), Expect = 0.0
 Identities = 376/558 (67%), Positives = 453/558 (81%), Gaps = 1/558 (0%)

Structural Features:
pfam03949, Malic_M, Malic enzyme, NAD binding domain.
CD-Length = 256 residues, 100.0% aligned
Score =  321 bits (823), Expect = 2e-88
Identities = 121/264 (45%), Positives = 160/264 (60%), Gaps = 10/264 (3%)

pfam00390, malic, Malic enzyme, N-terminal domain.
CD-Length = 186 residues, 100.0% aligned
Score =  279 bits (714), Expect = 8e-76
Identities = 100/190 (52%), Positives = 132/190 (69%), Gaps = 5/190 (2%)

COG0281, SfcA, Malic enzyme [Energy production and conversion]
CD-Length = 432 residues, 100.0% aligned
Score =  449 bits (1157), Expect = 4e-127
Identities = 178/517 (34%), Positives = 248/517 (47%), Gaps = 89/517 (17%)
Genomic Context:
Comment:
another possible gene name: maeA
ReferenceID:1131
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18273
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32088
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:564_cdd.html
URL:
Homologs By Global Alignment
Gene ID:564

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
970 PA3471_tr translation of PA3471 564 99.82 99.99 0 2916.0
38444 gb|AAG06859.1|AE004768_4 (AE004768) probable malic enzyme [Pseudomonas aeruginosa PAO1] 564 99.82 99.99 0 2916.0
38445 gb|AAO57390.1| (AE016870) malate dehydrogenase [Pseudomonas syringae pv. tomato str. DC3000] 575 74.08 86.08 13 2240.0
38447 gb|AAM86211.1|AE013868_5 (AE013868) NAD-linked malate dehydrogenase (malic enzyme) [Yersinia pestis KIM] 566 70.84 82.50 3 2109.0
38448 emb|CAC90334.1| (AJ414148) NAD-dependent malic enzyme [Yersinia pestis CO92] 566 70.84 82.50 3 2109.0
GC ORFID: 43566How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3471Glimmer Score:
Start: 3297546Stop: 3295852
Length: 1695
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3471 translation of PA3471Homolog Bit Score 1127.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1733 (ORF: BLASTX 869.0), t_PA3471 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGAAACAGCCAAGCGTCCCTTGTACGTTCCCCATGCCGGCCCTTCGCTGCTGGAGATGCCGCTGCTG
AACAAAGGCAGCGCGTTCAGTACCCAGGAACGCATCGATTTCAACCTGCAGGGCCTGCTGCCGCACAACATC
GAGACCATCGAGGAGCAGACCGAGCGCGCCTACAGCCAGTACAACCTGTGCAACACCGATCTGGACCGCCAC
ATCTTCCTGCGCTCGATCCAGGACAACAACGAGACCCTGTTCTTCCGCCTGCTCGAGGAGCACCTGGAAGAA
ATGATGCCGATCATCTACACCCCCACGGTCGGCCAGGCCTGCCAGGAGTTCTCGAAGATCTATCGGACCCAC
CGCGGCCTGTTCATCTCCTACCCGGACCGCGAGCGGATCGACGACATCCTGCGCAGCGCCACCAAGAACAAC
GTGAAGATCGTGGTGGTCACCGACAGCGAGCGGATCCTCGGCCTCGGCGACCAGGGCATCGGCGGGATGGGC
ATCCCGATCGGCAAGCTGTCGCTGTACACCGCCTGCGGCGGTATCAGCCCGGCCTACACCCTGCCGGTGGTG
CTGGACGTGGGCACCAACAACCCGGACCTGCTCAACGACCCGATGTACATGGGCTGGCGCCACGAGCGGGTG
AGCGGGGCGCAGTACGAGGAGTTCGTCGACCTGTTCATCCAGGCGATCAAGCGCCGCTGGCCCAACGTCCTG
CTGCAATTCGAGGACTTCGCCCAGACCAATGCCATGCCGTTGCTGGAGCGCTACAAGGACGAGCTGTGCTGC
TTCAACGACGACATCCAGGGCACCGCCGCGGTGGCCGTGGGCACCCTGCTGGCGGCTTGCAAGGCCAAGGGC
GAGAAGCTCAGCGAGCAGACCGTGACCTTCGTCGGCGCCGGCTCCGCCGGTTGCGGCATCGCCGAGCAGATC
ATCGCCGCCATGCAACTGGAGGGCCTGGACGAGGCCCAGGCGCGTCGGCGCATCTTCATGGTCGACCGCTGG
GGCCTGCTCACCGACGACATGAGCAACCTGCTTGACTTCCAGCACCGCCTGGCGCAGAAGCGCGCCGATCTC
GGTGCCTGGGGCGGCCAGCAGGGCGACGACCTGGCGTTGCTGGAAGTGATCCGCAATGCCCGGCCGACGGTG
CTGATCGGCGTCTCCGGGCAGCGCGGGCTGTTTTCCGAAGAGGTCATCCGCGAGCTGCACAGCCATTGCAAG
CAGCCGCTGGTGATGCCGCTGTCCAACCCGACCTCGCGGGTCGAGGCGACTCCGCAGGAAATCCTCAACTGG
ACCGACGGCCAGGCGCTGGTCGCCACCGGTAGCCCGTTCCAACCGGTGCAGGTGGGCGACAAGCGGATTCCC
ATCGCCCAGTGCAACAACGCCTATATCTTCCCCGGCATCGGCCTGGGGGTGATCGCCGCGCGGGCCAACCGG
GTCACCGAAGGCATGCTGATGGCCGCGGCCAACGCCCTGGCCAACTGCTCGCCGATCGTTACCCGGGGCGAG
GGCGCCGTGTTGCCGGCGCTGGGTGACATCCGCGAGGTCAGCAAGCGCATCGCCGTCGCCGTGGCCAAGCAG
GCCCAGGCCGAGGGCAAGGCCCTGCATACCAGCGACGAGGTATTGAACGACGCCATCGAGGCGAACTTCTGG
TTCCCGCGCTACCGTGCCTACCGCCGGACTTCGTTCTGA