ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5637

TrivialName: PA14_48500

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_48500

PAO1 Ortholog Locus:

Sequence Length: 888

Protein Length: 295

Start: 4311093

Stop: 4311980

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAD13853.1| (AL646058) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] Identities = 102/282 (36%), Positives = 147/282 (52%), Gaps = 8/282 (2%)

Sequence:

ATGCTCAAACACTGGCCCCCACTGAATGCCCTTCGTGGCTTCGAAGCCGCCGCCCGCCTCGGCAGCTTCCAC
AAGGCCGCCGAGGAGCTGCACCTCACCCAGTCGGCGATCAGCCAGCAGATCCGCAGCCTGGAAGGCTATCTC
GAGCAACCGCTGTTCTTTCGCAACGGACGCAAGGTGAGCCTGACCGACGCTGGCTTCGATCTGCTCAGCACC
ACCCAGTCCCTGCTCCAGCAACTGGCCGCGGGGGTCCGTCGCCTCGACCAGTACCGCAAGCCCAACCAACTG
GTGGTCAATACCACCCCGGCCTTCGCCCGCCACTGGCTGGTGCCGCACCTGGGCGATTTCCATCGCCATCAC
CCACAGGTGGACCTCTGGCTATTGACCACCGACGAGGTACCCGAGATGGCCAGCCAGACCATCGACGTAGCC
ATCCGCGACGACCTTTGCGCCCAGGCCGAATGCAGCTTTCGCTCGCTCCTCGAAGACCGCCTCTACCCCGCC
TGCCATCCCGACCTGCTGGCGCTGCCGGCGGAACGGCGCGGCACCCTGCACGGCGAGCGCGAAATGGACTGG
AGCCACTGGCAGGTACAGGGCGGCGCGGACGTTGGCCAACGCAGTGCCGGCCTGAACTTCTCCGACCCCGGA
CTGCTGCTGGAGGCCGCCACCCAGGGCCTCGGCATCGCGCTGGTCAGCCAGTTGCTGGCCGCACCCGCGCGA
GCCGCCGGACAGTTGGTCGCGCTCTGCGAACAGAATGTCCGCGGGCCCGAATGGGCCTGGCTGGTGCACCGC
GACAGCGAACGCAACAGCCTGACCCGGGCATTCTGCCAATGGCTGGAAGAAACCATTGGCGGAGCATCGCGC
ACAGCCCCCGGACGGCGCGGATAA

Translation:

MLKHWPPLNALRGFEAAARLGSFHKAAEELHLTQSAISQQIRSLEGYLEQPLFFRNGRKVSLTDAGFDLLST
TQSLLQQLAAGVRRLDQYRKPNQLVVNTTPAFARHWLVPHLGDFHRHHPQVDLWLLTTDEVPEMASQTIDVA
IRDDLCAQAECSFRSLLEDRLYPACHPDLLALPAERRGTLHGEREMDWSHWQVQGGADVGQRSAGLNFSDPG
LLLEAATQGLGIALVSQLLAAPARAAGQLVALCEQNVRGPEWAWLVHRDSERNSLTRAFCQWLEETIGGASR
TAPGRRG*

AnnotationID:5639 GeneID:5637

AnnotatorUID: danlee

Modification Date/Time: 2005-10-08 16:04:45

Gene Name:

Confidence Code: 3

GeneProduct: putative transcriptional regulator

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0583

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|48729335|ref|ZP_00263086.1|  COG0583: Transcriptional regulator [Pseudomonas fluorescens PfO-1]
     Length=286
     Score =  434 bits (1117),  Expect = 1e-120
     Identities = 206/279 (73%), Positives = 240/279 (86%), Gaps = 0/279 (0%)

Structural Features:

COG0583, LysR, Transcriptional regulator [Transcription].
             CD-Length = 297 residues,  99.7% aligned
             Score =  118 bits (296), Expect = 8e-28

Genomic Context:

Comment:

ReferenceID:11234

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28407

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37535

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5637_cdd.html

URL:

GC ORFID: `48639`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `642815`	Stop: `641928`
Length: `888`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCTCAAACACTGGCCCCCACTGAATGCCCTTCGTGGCTTCGAAGCCGCCGCCCGCCTCGGCAGCTTCCAC AAGGCCGCCGAGGAGCTGCACCTCACCCAGTCGGCGATCAGCCAGCAGATCCGCAGCCTGGAAGGCTATCTC GAGCAACCGCTGTTCTTTCGCAACGGACGCAAGGTGAGCCTGACCGACGCTGGCTTCGATCTGCTCAGCACC ACCCAGTCCCTGCTCCAGCAACTGGCCGCGGGGGTCCGTCGCCTCGACCAGTACCGCAAGCCCAACCAACTG GTGGTCAATACCACCCCGGCCTTCGCCCGCCACTGGCTGGTGCCGCACCTGGGCGATTTCCATCGCCATCAC CCACAGGTGGACCTCTGGCTATTGACCACCGACGAGGTACCCGAGATGGCCAGCCAGACCATCGACGTAGCC ATCCGCGACGACCTTTGCGCCCAGGCCGAATGCAGCTTTCGCTCGCTCCTCGAAGACCGCCTCTACCCCGCC TGCCATCCCGACCTGCTGGCGCTGCCGGCGGAACGGCGCGGCACCCTGCACGGCGAGCGCGAAATGGACTGG AGCCACTGGCAGGTACAGGGCGGCGCGGACGTTGGCCAACGCAGTGCCGGCCTGAACTTCTCCGACCCCGGA CTGCTGCTGGAGGCCGCCACCCAGGGCCTCGGCATCGCGCTGGTCAGCCAGTTGCTGGCCGCACCCGCGCGA GCCGCCGGACAGTTGGTCGCGCTCTGCGAACAGAATGTCCGCGGGCCCGAATGGGCCTGGCTGGTGCACCGC GACAGCGAACGCAACAGCCTGACCCGGGCATTCTGCCAATGGCTGGAAGAAACCATTGGCGGAGCATCGCGC ACAGCCCCCGGACGGCGCGGATAA