ViewGene
Locus Name:
GeneID:
Location:

GeneID:5636
TrivialName: PA14_48510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48510
PAO1 Ortholog Locus:
Sequence Length:336
Protein Length:111
Start: 4312055
Stop: 4312390
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04612.1|AE004552_2 (AE004552) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 63/73 (86%), Positives = 67/73 (91%), Gaps = 3/73 (4%)
Sequence:
GTGGTCGCCGCCGTTCTGCCGGCGGAACGGGATCGGCGCGCAGCGCTGCAGGTCATCGAGGCGCCGGCCGCG
CCGTTCGATCCGACGCAGTCGCGGCATACCTGGCGCGTCGCCGCCACCGACTACGCCGAGTCGGCGATCCTC
CTGCCGATCCTCGCCAGTCTTCGCCGCCAGGCGCCGGGCAGCCGCCTGGCGGTGCTGGACCTGGCGCCGCCG
CGAATCGTCAGGCAGGCGGAACGCGGCGATACGCTTCGGTCGTCGCCGCGGTTTGACGCACCGTCGCGCTTT
GCCCAAGCTAGCGGGCTTCGATCCACCATCAGGAAGTCCTTGGCGTGA
Translation:
MVAAVLPAERDRRAALQVIEAPAAPFDPTQSRHTWRVAATDYAESAILLPILASLRRQAPGSRLAVLDLAPP
RIVRQAERGDTLRSSPRFDAPSRFAQASGLRSTIRKSLA*
AnnotationID:5638GeneID:5636
AnnotatorUID: danlee
Modification Date/Time: 2005-10-08 16:04:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|11352014|pir||F83491  probable transcription regulator PA1223 [imported] - Pseudomonas 
aeruginosa (strain PAO1)
     Length=297
     Score =  121 bits (304),  Expect = 6e-27
     Identities = 63/73 (86%), Positives = 67/73 (91%), Gaps = 3/73 (4%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15499




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28405




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5636
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7903
                           PA1223_tr
                           translation of PA1223
                           300
                           25.00
                           27.33
                           192
                           298.0
     

     
     
197335
                           gb|AAG04612.1|AE004552_2
                           (AE004552) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           300
                           25.00
                           27.33
                           192
                           298.0
     

     






      

          
GC ORFID: 48638How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 641853Stop: 641518

          
Length: 336


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1223 translation of PA1223Homolog Bit Score 121.0

          
Other Homologs:  t_PA1223 translation of PA1223 (BLASTP 121)

          
GC ORF Sequence

           
GTGGTCGCCGCCGTTCTGCCGGCGGAACGGGATCGGCGCGCAGCGCTGCAGGTCATCGAGGCGCCGGCCGCG 
CCGTTCGATCCGACGCAGTCGCGGCATACCTGGCGCGTCGCCGCCACCGACTACGCCGAGTCGGCGATCCTC 
CTGCCGATCCTCGCCAGTCTTCGCCGCCAGGCGCCGGGCAGCCGCCTGGCGGTGCTGGACCTGGCGCCGCCG 
CGAATCGTCAGGCAGGCGGAACGCGGCGATACGCTTCGGTCGTCGCCGCGGTTTGACGCACCGTCGCGCTTT 
GCCCAAGCTAGCGGGCTTCGATCCACCATCAGGAAGTCCTTGGCGTGA