ViewGene
Locus Name:
GeneID:
Location:

GeneID:563
TrivialName: PA14_04730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04730
PAO1 Ortholog Locus:PA0361
Sequence Length:1734
Protein Length:577
Start: 420871
Stop: 419138
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03750.1|AE004474_2 (AE004474) probable gamma-glutamyltranspeptidase precursor [Pseudomonas aeruginosa PAO1]
Identities = 567/577 (98%), Positives = 570/577 (98%)
Sequence:
ATGTCCTTCCTGAACCTGCCCGTCCGTACCCTGGTCGCCGCCTGCGGCCTGTCCCTGCTCAGCCTCGCGGCG
CATGCCGACAGCTTTCGCGGCGACGCCCACGCACCGCAGCAGGCCGCCGTCGCCACGCCACATCCGGCCGCG
ACCGTCGCCGGCCTGGAAACCCTGGCCAATGGCGGCAACGCCTTCGACGCCGCGGCGGCCATCGCCGCTGCC
CTGGCGGTAGCCGAGCCTTACGGCTCGGGACTCGGCGGCGGTGGATTCTTCCTTCTGCGCCAGGCCGGCGCG
CAGCCGACCTATCGCTTCCTCGACGCCCGCGAGCGCGCGCCGAAGGCCGCCTACGCCGACATGTACCGGCGC
AACGGCAAGGTCGACCCCAGGCTGTCCGTCGACGGCCCGCTGGCGGCGGCGATCCCCGGCCTGCCGGCGGCG
CTGGTCGAATTGAGCGGCCGCTACGGACGCAAGCCCCTGGCCGACAATCTGGTGCCGGCGATCCGCCTGGCG
GTGGATGGCGTATCCGTCGACCGGGTCTACCGCGACCGCGTCGCCATGCGCCTGGAAGCGATGCGCAAGGAC
CCGGAAACCGCGCGGATCTTCCTCGACAAGGGCGGAATCCCCGACGAATGGAACCTGCTCCGCCAACCGCAG
TTGGCACGTACCCTGGAACGCCTCGGGCGCTACGGGCGGATCGGCTTCTACGAAGGCGAGACAGCGGACAAG
CTGCTCACCGGGGTCCGCGCCGGCGGCGGCATCTGGAGCGCGGCCGACCTGCGCGACTACCGGGTGATCGAA
CGCCGCCCGCTGGAGGTGAAGCTGGCCAACGGCCGCGAACTGATCAGCGCACCGCCGCCCTCGGCCGGCGGC
GTGGCCCTGGCGCAGAGCCTGCAGATGCTGGAACAGCTGCCGTGGCAGAAGGCCGAGCCGGTACAGCGCGCC
CATTACGTGCTGGAGGTCCTGCGCCGTGCCTACCGCGATCGAGGCCTGCTCGGCGACCCGGACTTCGTCGCC
AACCCGCTGCCCAGCTTGCTGGCGCCGGACTACCTGAAGCGCCTTGCCGCCGGCATCGACCCGCGCCGCGCC
ACGCCCAGCTCGGCGCTGCCGGAAGCGCCGGCCTGGCGCGAAGGCGACCACACCACCCACTTCGCGGTGATC
GATGCCCAGGGCAACGCGGTGGCCGCCACCCTCTCGGTGAACCTGCCGTTCGGCGCCGCCTTCACCGTTCCC
GGTACCGGCGTGGTGCTGAACAACGAGATGGACGATTTCGCCGCCGACACCCAGGGCGCCAACAGCTACGGC
CTGGCCGGCAGCCAGGCGAACGCGGTGGCGGCCGGCAAGCGCCCGCTGTCGAGCATGAGCCCGAGCTTCCTG
GAAAGCCCGACCGACTTCGCCGCCTTCGGCACCCCTGGCGGCAGCCGTATCCCGAGCATGGTGCTGATCTCC
ATGCTGCAGTACTTCGACGGCCGCCCGGTCGGCCAATGGGTCGCCGCGCCGCGCTACCACCACCAGTACAAG
CCGGACGTCGTCGAGTACGAACCGCGCGCCTTCAGCGATGCCGAGGCCGCCGAACTGCGCCGGCGCGGCTAT
CAGCTCAAACGCCTGGAGCGCAGCTACGGCAACCAGCAGGTGCTCTACTGGGACAAGCGCAGCGGCCGCGTC
GACGCCGCCAGCGACCCGCGCGGGATCGGTTATTCGGCGTTTTCCCCGGAGATGCAGGCACAGCCCCAGGCG
CACTGA
Translation:
MSFLNLPVRTLVAACGLSLLSLAAHADSFRGDAHAPQQAAVATPHPAATVAGLETLANGGNAFDAAAAIAAA
LAVAEPYGSGLGGGGFFLLRQAGAQPTYRFLDARERAPKAAYADMYRRNGKVDPRLSVDGPLAAAIPGLPAA
LVELSGRYGRKPLADNLVPAIRLAVDGVSVDRVYRDRVAMRLEAMRKDPETARIFLDKGGIPDEWNLLRQPQ
LARTLERLGRYGRIGFYEGETADKLLTGVRAGGGIWSAADLRDYRVIERRPLEVKLANGRELISAPPPSAGG
VALAQSLQMLEQLPWQKAEPVQRAHYVLEVLRRAYRDRGLLGDPDFVANPLPSLLAPDYLKRLAAGIDPRRA
TPSSALPEAPAWREGDHTTHFAVIDAQGNAVAATLSVNLPFGAAFTVPGTGVVLNNEMDDFAADTQGANSYG
LAGSQANAVAAGKRPLSSMSPSFLESPTDFAAFGTPGGSRIPSMVLISMLQYFDGRPVGQWVAAPRYHHQYK
PDVVEYEPRAFSDAEAAELRRRGYQLKRLERSYGNQQVLYWDKRSGRVDAASDPRGIGYSAFSPEMQAQPQA
H*
AnnotationID:572GeneID:563
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 15:03:38
Gene Name:
Confidence Code:3
GeneProduct:probable gamma-glutamyltranspeptidase precursor
Cell Localization:(8) Periplasmic
Synonyms:PA0361
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01019
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|67088994|gb|EAM08460.1|  Peptidase T3, gamma-glutamyltranspeptidase [Azotobacter vinelandii AvOP]
     Length=567
     Score =  735 bits (1897),  Expect = 0.0
     Identities = 375/563 (66%), Positives = 441/563 (78%), Gaps = 10/563 (1%)

gi|53757351|gb|AAU91642.1|  gamma-glutamyltranspeptidase [Methylococcus capsulatus str. Bath]
     Length=576
     Score =  494 bits (1271),  Expect = 5e-138
     Identities = 284/559 (50%), Positives = 347/559 (62%), Gaps = 10/559 (1%)






 
Structural Features:
pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase..
             CD-Length = 504 residues, 100.0% aligned
             Score =  427 bits (1099), Expect = 2e-120






   
Genomic Context:






   
Comment:


















    ReferenceID:1129




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17052




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search






    
Reference Type:Blast (text/plain)







    
Data:PA0361_CDS.cgi


    		




 
URL:

















    ReferenceID:18271




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:563
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
969
                           PA0361_tr
                           translation of PA0361
                           577
                           98.26
                           98.78
                           0
                           2917.0
     

     
     
38432
                           gb|AAG03750.1|AE004474_2
                           (AE004474) probable gamma-glutamyltranspeptidase precursor [Pseudomonas aeruginosa PAO1]
                           577
                           98.26
                           98.78
                           0
                           2917.0
     

     
     
38433
                           gb|AAM41666.1|
                           (AE012348) gamma-glutamyltranspeptidase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           604
                           45.69
                           58.44
                           38
                           1170.0
     

     
     
38434
                           gb|AAM37374.1|
                           (AE011891) gamma-glutamyltranspeptidase [Xanthomonas axonopodis pv. citri str. 306]
                           613
                           44.04
                           56.76
                           57
                           1161.0
     

     
     
38435
                           gb|AAO28164.1|
                           (AE012554) gamma-glutamyltranspeptidase [Xylella fastidiosa Temecula1]
                           616
                           43.18
                           56.00
                           52
                           1151.0
     

     






      

          
GC ORFID: 43565How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0361Glimmer Score: 

          
Start: 6222213Stop: 6220480

          
Length: 1734


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0361 translation of PA0361Homolog Bit Score 1128.0

          
Other Homologs:  t_PA0361 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTTCCTGAACCTGCCCGTCCGTACCCTGGTCGCCGCCTGCGGCCTGTCCCTGCTCAGCCTCGCGGCG 
CATGCCGACAGCTTTCGCGGCGACGCCCACGCACCGCAGCAGGCCGCCGTCGCCACGCCACATCCGGCCGCG 
ACCGTCGCCGGCCTGGAAACCCTGGCCAATGGCGGCAACGCCTTCGACGCCGCGGCGGCCATCGCCGCTGCC 
CTGGCGGTAGCCGAGCCTTACGGCTCGGGACTCGGCGGCGGTGGATTCTTCCTTCTGCGCCAGGCCGGCGCG 
CAGCCGACCTATCGCTTCCTCGACGCCCGCGAGCGCGCGCCGAAGGCCGCCTACGCCGACATGTACCGGCGC 
AACGGCAAGGTCGACCCCAGGCTGTCCGTCGACGGCCCGCTGGCGGCGGCGATCCCCGGCCTGCCGGCGGCG 
CTGGTCGAATTGAGCGGCCGCTACGGACGCAAGCCCCTGGCCGACAATCTGGTGCCGGCGATCCGCCTGGCG 
GTGGATGGCGTATCCGTCGACCGGGTCTACCGCGACCGCGTCGCCATGCGCCTGGAAGCGATGCGCAAGGAC 
CCGGAAACCGCGCGGATCTTCCTCGACAAGGGCGGAATCCCCGACGAATGGAACCTGCTCCGCCAACCGCAG 
TTGGCACGTACCCTGGAACGCCTCGGGCGCTACGGGCGGATCGGCTTCTACGAAGGCGAGACAGCGGACAAG 
CTGCTCACCGGGGTCCGCGCCGGCGGCGGCATCTGGAGCGCGGCCGACCTGCGCGACTACCGGGTGATCGAA 
CGCCGCCCGCTGGAGGTGAAGCTGGCCAACGGCCGCGAACTGATCAGCGCACCGCCGCCCTCGGCCGGCGGC 
GTGGCCCTGGCGCAGAGCCTGCAGATGCTGGAACAGCTGCCGTGGCAGAAGGCCGAGCCGGTACAGCGCGCC 
CATTACGTGCTGGAGGTCCTGCGCCGTGCCTACCGCGATCGAGGCCTGCTCGGCGACCCGGACTTCGTCGCC 
AACCCGCTGCCCAGCTTGCTGGCGCCGGACTACCTGAAGCGCCTTGCCGCCGGCATCGACCCGCGCCGCGCC 
ACGCCCAGCTCGGCGCTGCCGGAAGCGCCGGCCTGGCGCGAAGGCGACCACACCACCCACTTCGCGGTGATC 
GATGCCCAGGGCAACGCGGTGGCCGCCACCCTCTCGGTGAACCTGCCGTTCGGCGCCGCCTTCACCGTTCCC 
GGTACCGGCGTGGTGCTGAACAACGAGATGGACGATTTCGCCGCCGACACCCAGGGCGCCAACAGCTACGGC 
CTGGCCGGCAGCCAGGCGAACGCGGTGGCGGCCGGCAAGCGCCCGCTGTCGAGCATGAGCCCGAGCTTCCTG 
GAAAGCCCGACCGACTTCGCCGCCTTCGGCACCCCTGGCGGCAGCCGTATCCCGAGCATGGTGCTGATCTCC 
ATGCTGCAGTACTTCGACGGCCGCCCGGTCGGCCAATGGGTCGCCGCGCCGCGCTACCACCACCAGTACAAG 
CCGGACGTCGTCGAGTACGAACCGCGCGCCTTCAGCGATGCCGAGGCCGCCGAACTGCGCCGGCGCGGCTAT 
CAGCTCAAACGCCTGGAGCGCAGCTACGGCAACCAGCAGGTGCTCTACTGGGACAAGCGCAGCGGCCGCGTC 
GACGCCGCCAGCGACCCGCGCGGGATCGGTTATTCGGCGTTTTCCCCGGAGATGCAGGCACAGCCCCAGGCG 
CACTGA