ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5621

TrivialName: PA14_49480

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_49480

PAO1 Ortholog Locus:

Sequence Length: 1788

Protein Length: 595

Start: 4399221

Stop: 4401008

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAM72228.1| (AE012864) hypothetical protein [Chlorobium tepidum TLS] Identities = 134/521 (25%), Positives = 221/521 (42%), Gaps = 77/521 (14%)

Sequence:

ATGCAAATAACTAAACTAACCCTCCATCGCTTTAAAAAATACAGAGATAAAGAAATATCAATAAAACCCGGA
CTATCACTTTTTGCCGGACCTAATAACGCAGGGAAAACCACCATATTACAAGCTTTCGCAGTTTGGGAATTC
TGCAAAACTGTACTTGAGATGGAGAAAGGCAGCGCTAGCATTCGGCAAGGTTACGCTGGTCAAGGCCTAGGA
ATGGGAGCAGATGATTTCCTAGTCATTAACACACCGTCTCTTAAACACCTATGGACAAATCTTAACACTCAA
AGAGACAGTGAAAATGATGGGTACACTCTATGGATAAAAGTTGACTGGACTGATAGGGACAACGCAAAGCAT
TTAACAATAGGCCTATCACTCGCAAATGATAGAATATTTATAAAAACAATATCAAGCAACATTCAGGAAGAT
GAAAAATCACCAAACATTGCTTATATACCACCTTTTGCAGGCATAACAACAAAGGAACAAAAAGCGACACCT
GCCCAACAGAGAAGACTGATAGGACAAGGGCTACCCGGCGCAACCATTAGATCAACTCTTCTCAATCTATTT
AATACCAACCAAGCAAAGAGAGCAGCCTTTAAAGACAATCGCGGCAGAATTCCTAGGCACCAATTACGAGAG
ATTAGGGATTCGGACCCATGGGAGATCCTCTCCACAATAATAAAAGAAGTATTCAAAACAGAGATTACAGTA
AGCCCATACAATGAGGCATACCACACCTATATAAAGCTCACAACTTACAAGGGAGACTTCAATGAACGAGGA
CTATTTACTCGATACTCAAATTATACCCCTAGAGATCTAACTGCGGAAGGAAGTGGCTTTCTACAGTGGCTA
AGTGTATTTGCTTTTGCGCTTTCCCCAGAAACCGACTTGATACTTCTTGACGAACCAGACGCTCACTTACAC
TCCACTCTTCAGCATGAAATAATAAGACAACTTGAGAAAGTAGCAGAAAAAGCAGGAAAGCAGATATTTTTC
TGCACTCACTCTCCAGAGCTAATAAAGGCACACCCTGCAGAAAAAATTCTTTCAATAAACAGAGACTCAATC
TCATATCTATCTGACGACCAAGGGAAAATAATATCACTATCTGGCATAGGCAGCGAATACTACCCATTGTTA
GACAACACAAAAAAGACCAAAAAAATACTATTTGTAGAAAATCTATCTGACGCAAGAACAATATTCAATATC
GCAAGAAAACTTGGCTTCAACATTGAAAACAAAATCGTTATATGGCCTTGGGCTTCTAAAGGTCATGAGCGC
AAGCATTTATTCAACCAACTCCTCCTTGAAATCCCTGAGTTAAAAGGGATAAGCCTAAACGACAGAGACAAT
GAAGAGATAAACACTGTAATAGCCGAAAACCTTCGGGATACTACATATCCCACACCAAATGCGCAGACTAGA
CTTTACTTCAAAAAATGGCGAAGAAGATACATTGAAGGCTACTTCCTTCACCCCGACCCAATAGCAAGGGCA
GCCAATCGACCAGCAGACGAAGTAATAAGACACGTATTAGATAACTTTGCAATCAACATTGCGGGCCGGATA
GTAACTCAACAAAACGAGCCTGCAGCGCTCCTCGACTGCCGTGCAAAATCAATATTATCCGAAGACACAAAT
AGCATCCAAAGCGTCTTCCAAGTTGACAAATACAAAATAGTAAATGAATTATTACCAAACGAAATACACGAA
GATTTCCATATATTAATTAGAGAAATCTTACAGTTACTACAAATTAATGAACAAGCTTAA

Translation:

MQITKLTLHRFKKYRDKEISIKPGLSLFAGPNNAGKTTILQAFAVWEFCKTVLEMEKGSASIRQGYAGQGLG
MGADDFLVINTPSLKHLWTNLNTQRDSENDGYTLWIKVDWTDRDNAKHLTIGLSLANDRIFIKTISSNIQED
EKSPNIAYIPPFAGITTKEQKATPAQQRRLIGQGLPGATIRSTLLNLFNTNQAKRAAFKDNRGRIPRHQLRE
IRDSDPWEILSTIIKEVFKTEITVSPYNEAYHTYIKLTTYKGDFNERGLFTRYSNYTPRDLTAEGSGFLQWL
SVFAFALSPETDLILLDEPDAHLHSTLQHEIIRQLEKVAEKAGKQIFFCTHSPELIKAHPAEKILSINRDSI
SYLSDDQGKIISLSGIGSEYYPLLDNTKKTKKILFVENLSDARTIFNIARKLGFNIENKIVIWPWASKGHER
KHLFNQLLLEIPELKGISLNDRDNEEINTVIAENLRDTTYPTPNAQTRLYFKKWRRRYIEGYFLHPDPIARA
ANRPADEVIRHVLDNFAINIAGRIVTQQNEPAALLDCRAKSILSEDTNSIQSVFQVDKYKIVNELLPNEIHE
DFHILIREILQLLQINEQA*

AnnotationID:5623 GeneID:5621

AnnotatorUID: danlee

Modification Date/Time: 2005-10-10 12:12:43

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|68243757|gb|EAN25953.1|  conserved hypothetical protein [Pelodictyon phaeoclathratiforme BU-1]
     Length=580
     Score =  150 bits (380),  Expect = 1e-34
     Identities = 152/623 (24%), Positives = 266/623 (42%), Gaps = 87/623 (13%)

gi|21646953|gb|AAM72228.1|  hypothetical protein CT0993 [Chlorobium tepidum TLS]
     Length=585
     Score =  142 bits (357),  Expect = 5e-32
     Identities = 134/521 (25%), Positives = 221/521 (42%), Gaps = 77/521 (14%)

Structural Features:

COG1106, Predicted ATPases [General function prediction only]        
    CD-Length = 371 residues,  97.8% aligned
    Score = 55.8 bits (134), Expect = 1e-08

Genomic Context:

Comment:

ReferenceID:11205

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28377