ViewGene

Locus Name:
GeneID:
Location:

GeneID:562
TrivialName: PA14_21370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21370
PAO1 Ortholog Locus:PA3299
Sequence Length:1689
Protein Length:562
Start: 1850024
Stop: 1851712
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06687.1|AE004752_3 (AE004752) long-chain-fatty-acid--CoA ligase [Pseudomonas aeruginosa PAO1]
Identities = 561/562 (99%), Positives = 561/562 (99%)
Sequence:
ATGATCGAAAACTTCTGGAAGGACAAGTACCCAGCGGGTATTGCTGCCGAGATCAATCCCGACCAGTACCCG
AACATCCTGTCGGTACTGAAGGAGTCCTGCCAACGTTTTGCCACCAAGCCCGCGTTCACCAACCTGGGCAAG
ACCCTGACCTACGGCGAGCTGTACAAGCTGTCCGGCGACTTCGCCGCCTACCTGCAGCAGCACACCGATCTC
AAGCCCGGCGACCGCATCGCCGTCCAGTTGCCCAACGTCCTGCAATACCCGATCGTGGTCTTCGGCGCCATG
CGCGCCGGCCTCATCGTGGTCAACACCAACCCGCTGTACACCGCGCGCGAACTGGAACACCAGTTCAACGAC
TCCGGCGCCAAGGCGGTGGTCTGCCTGGCCAACATGGCCCACCTGGTCGAGGGCGTACTGCCGAAGACCGGC
GTCAAGCAGGTGATCGTCACCGAAGTCGGCGACATCCTGCCGCCGCTGAAGCGCTTCATCGTCAACTTCGTG
GTCAAGCACATCAAGAAGATGGTGCCGGCCTACAGCCTGCCGCAAGCCACCAATCTGACCGACGCGCTGGCC
AGGGGCGCCGGCAAGTCGTTCCAGGAAGCCGCGCCGCAGGCCGACGACGTCGCCGTGCTGCAATACACCGGC
GGCACCACCGGGGTCGCCAAGGGCGCCATGCTGACCCACCGCAACCTGGTGGCCAACATGTTGCAGTGCAAG
GCGCTGATGGGCGCCAACCTCAACGAGGGCTGCGAGATCCTCATCGCGCCGCTGCCGCTGTACCACATCTAT
GCCTTCACCTTCCATTGCATGGCGATGATGCTCACCGGCAACCACAACATCCTGATCACCAACCCGCGCGAC
CTGCCGTCGATGCTCAAGGACCTCGGCCAGTGGAAGTTCACCGGCTTCGTCGGCCTGAACACCCTGTTCGTC
GCCCTGTGCAACAACGAGACCTTCCGCAAGCTGGACTTCTCCGCGCTGAAACTGACCCTCTCCGGCGGCATG
GCACTGCAGCTGGCCACCGCGGAGCGCTGGAAGGAAGTCACCGGCTGCGCCATCTGCGAAGGCTACGGCATG
ACCGAGACCGCGCCGGTGGTATCGGTCAACCCGTTCCAGAACATCCAGGTCGGCACCATCGGTATTCCGGTG
CCCTCGACCCTGTGCAAGGTGATCGGCGACGACGGCCAGGAAGTGCCCCTGGGCGAGCGCGGCGAACTCTGC
GTGAAAGGCCCGCAGGTGATGAAGGGCTACTGGCAGCGCCAGGAAGCCACCGACGAGATCCTCGACGCCGAT
GGTTGGCTGAAGACCGGCGATATCGCGATCATCCAGGAAGACGGCTACATGCGCATCGTCGACCGGAAGAAG
GACATGATCCTGGTCTCCGGCTTCAATGTTTACCCGAACGAGCTGGAAGACGTGCTGGCGACCCTGCCGGGC
GTCCTGCAGTGTGCCGCGATCGGCATCCCCGACGAGAAGTCCGGCGAGTCGATCAAGGTCTTCGTGGTGGTC
AAGCCGGGGGCGACCCTGACCAAGGAACAGGTCATGCAGCACATGCATGACAACCTGACCGgCTACAAGCGG
CCGAAGGCCGTGGAGTTCCGTGACAGCCTGCCGACCACCAACGTCGGCAAGATCCTGCGCCGCGAACTGCGC
GACGAAGAGCTGAAGAAAGCGGGCCAGAAGTAA
Translation:
MIENFWKDKYPAGIAAEINPDQYPNILSVLKESCQRFATKPAFTNLGKTLTYGELYKLSGDFAAYLQQHTDL
KPGDRIAVQLPNVLQYPIVVFGAMRAGLIVVNTNPLYTARELEHQFNDSGAKAVVCLANMAHLVEGVLPKTG
VKQVIVTEVGDILPPLKRFIVNFVVKHIKKMVPAYSLPQATNLTDALARGAGKSFQEAAPQADDVAVLQYTG
GTTGVAKGAMLTHRNLVANMLQCKALMGANLNEGCEILIAPLPLYHIYAFTFHCMAMMLTGNHNILITNPRD
LPSMLKDLGQWKFTGFVGLNTLFVALCNNETFRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGM
TETAPVVSVNPFQNIQVGTIGIPVPSTLCKVIGDDGQEVPLGERGELCVKGPQVMKGYWQRQEATDEILDAD
GWLKTGDIAIIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLATLPGVLQCAAIGIPDEKSGESIKVFVVV
KPGATLTKEQVMQHMHDNLTGYKRPKAVEFRDSLPTTNVGKILRRELRDEELKKAGQK*
AnnotationID:571GeneID:562
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 07:07:02
Gene Name:fadD1
Confidence Code:2
GeneProduct:long-chain-fatty-acid--CoA ligase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00501,COG0318,COG0365,COG1022
Secondary Functional Category(ies):biosynthesiis of cofactors, prosthetic groups and carriers
EC Number:6.2.1.3
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70122.1|AE016652_3 (AE016791) long-chain-fatty-acid-CoA ligase [Pseudomonas putida
           KT2440]
          Length = 565

 Score =  964 bits (2491), Expect = 0.0
 Identities = 465/562 (82%), Positives = 514/562 (91%)

>gb|AAO57553.1| (AE016870) long-chain-fatty-acid--CoA ligase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 563

 Score =  937 bits (2421), Expect = 0.0
 Identities = 450/562 (80%), Positives = 504/562 (89%)

>gb|AAN80668.1|AE016761_243 (AE016761) Long-chain-fatty-acid--CoA ligase [Escherichia coli
           CFT073]
          Length = 583

 Score =  627 bits (1618), Expect = e-179
 Identities = 308/562 (54%), Positives = 411/562 (73%), Gaps = 3/562 (0%)
Structural Features:
pfam00501, AMP-binding, AMP-binding enzyme.
CD-Length = 412 residues, 100.0% aligned
Score =  315 bits (809), Expect = 6e-87
Identities = 140/442 (31%), Positives = 201/442 (45%), Gaps = 36/442 (8%)

COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
CD-Length = 534 residues,  99.6% aligned
Score =  473 bits (1218), Expect = 2e-134
Identities = 209/558 (37%), Positives = 294/558 (52%), Gaps = 35/558 (6%)

COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
CD-Length = 528 residues,  92.0% aligned
Score =  268 bits (686), Expect = 1e-72
Identities = 138/519 (26%), Positives = 205/519 (39%), Gaps = 40/519 (7%)

COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
CD-Length = 613 residues,  78.1% aligned
Score =  264 bits (675), Expect = 3e-71
Identities = 138/521 (26%), Positives = 219/521 (42%), Gaps = 95/521 (18%)
Genomic Context:
Comment:
ReferenceID:1127
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18269
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32254
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:562_cdd.html
URL:
ReferenceID:34019
Author/Investigator(s): Banchio C, Gramajo H.
Title: A stationary-phase acyl-coenzyme A synthetase of Streptomyces coelicolor A3(2) is necessary for the normal onset of antibiotic production.
PubMed: 12200271
MedLine:
Source:
Appl Environ Microbiol. 2002 Sep;68(9):4240-6.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12200271
Homologs By Global Alignment
Gene ID:562

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
967 PA3299_tr translation of PA3299 562 99.82 99.82 0 2920.0
38366 gb|AAG06687.1|AE004752_3 (AE004752) long-chain-fatty-acid--CoA ligase [Pseudomonas aeruginosa PAO1] 562 99.82 99.82 0 2920.0
38367 gb|AAN70122.1|AE016652_3 (AE016791) long-chain-fatty-acid-CoA ligase [Pseudomonas putida KT2440] 565 82.30 90.97 3 2491.0
38369 gb|AAF02529.1|AF150669_1 (AF150669) long-chain-fatty-acid-CoA ligase [Pseudomonas putida] 565 81.94 90.97 3 2488.0
38368 gb|AAK18166.1|AF290948_3 (AF290948) FadD1 [Pseudomonas putida] 565 81.94 90.97 3 2488.0
GC ORFID: 43564How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3299Glimmer Score:
Start: 3103907Stop: 3102219
Length: 1689
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA3299 translation of PA3299Homolog Bit Score 1129.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6315 (ORF: BLASTX 932.0), t_PA3300 (ORF: BLASTX 688.0), psyr_15may02_Scaffold5_revised_gene6313 (ORF: BLASTX 676.0), t_PA3299 (ORF: GLIMMER)
GC ORF Sequence
ATGATCGAAAACTTCTGGAAGGACAAGTACCCAGCGGGTATTGCTGCCGAGATCAATCCCGACCAGTACCCG
AACATCCTGTCGGTACTGAAGGAGTCCTGCCAACGTTTTGCCACCAAGCCCGCGTTCACCAACCTGGGCAAG
ACCCTGACCTACGGCGAGCTGTACAAGCTGTCCGGCGACTTCGCCGCCTACCTGCAGCAGCACACCGATCTC
AAGCCCGGCGACCGCATCGCCGTCCAGTTGCCCAACGTCCTGCAATACCCGATCGTGGTCTTCGGCGCCATG
CGCGCCGGCCTCATCGTGGTCAACACCAACCCGCTGTACACCGCGCGCGAACTGGAACACCAGTTCAACGAC
TCCGGCGCCAAGGCGGTGGTCTGCCTGGCCAACATGGCCCACCTGGTCGAGGGCGTACTGCCGAAGACCGGC
GTCAAGCAGGTGATCGTCACCGAAGTCGGCGACATCCTGCCGCCGCTGAAGCGCTTCATCGTCAACTTCGTG
GTCAAGCACATCAAGAAGATGGTGCCGGCCTACAGCCTGCCGCAAGCCACCAATCTGACCGACGCGCTGGCC
AGGGGCGCCGGCAAGTCGTTCCAGGAAGCCGCGCCGCAGGCCGACGACGTCGCCGTGCTGCAATACACCGGC
GGCACCACCGGGGTCGCCAAGGGCGCCATGCTGACCCACCGCAACCTGGTGGCCAACATGTTGCAGTGCAAG
GCGCTGATGGGCGCCAACCTCAACGAGGGCTGCGAGATCCTCATCGCGCCGCTGCCGCTGTACCACATCTAT
GCCTTCACCTTCCATTGCATGGCGATGATGCTCACCGGCAACCACAACATCCTGATCACCAACCCGCGCGAC
CTGCCGTCGATGCTCAAGGACCTCGGCCAGTGGAAGTTCACCGGCTTCGTCGGCCTGAACACCCTGTTCGTC
GCCCTGTGCAACAACGAGACCTTCCGCAAGCTGGACTTCTCCGCGCTGAAACTGACCCTCTCCGGCGGCATG
GCACTGCAGCTGGCCACCGCGGAGCGCTGGAAGGAAGTCACCGGCTGCGCCATCTGCGAAGGCTACGGCATG
ACCGAGACCGCGCCGGTGGTATCGGTCAACCCGTTCCAGAACATCCAGGTCGGCACCATCGGTATTCCGGTG
CCCTCGACCCTGTGCAAGGTGATCGGCGACGACGGCCAGGAAGTGCCCCTGGGCGAGCGCGGCGAACTCTGC
GTGAAAGGCCCGCAGGTGATGAAGGGCTACTGGCAGCGCCAGGAAGCCACCGACGAGATCCTCGACGCCGAT
GGTTGGCTGAAGACCGGCGATATCGCGATCATCCAGGAAGACGGCTACATGCGCATCGTCGACCGGAAGAAG
GACATGATCCTGGTCTCCGGCTTCAATGTTTACCCGAACGAGCTGGAAGACGTGCTGGCGACCCTGCCGGGC
GTCCTGCAGTGTGCCGCGATCGGCATCCCCGACGAGAAGTCCGGCGAGTCGATCAAGGTCTTCGTGGTGGTC
AAGCCGGGGGCGACCCTGACCAAGGAACAGGTCATGCAGCACATGCATGACAACCTGACCGgCTACAAGCGG
CCGAAGGCCGTGGAGTTCCGTGACAGCCTGCCGACCACCAACGTCGGCAAGATCCTGCGCCGCGAACTGCGC
GACGAAGAGCTGAAGAAAGCGGGCCAGAAGTAA