ViewGene
Locus Name:
GeneID:
Location:

GeneID:5619
TrivialName: PA14_49540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49540
PAO1 Ortholog Locus:
Sequence Length:780
Protein Length:259
Start: 4406350
Stop: 4407129
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGCACCTGCTTTACCCCTCCGCCCCCGATCGCAGCAACGCGGTCGATGAACTCTTCGCCGAGGAATATGAC
GCGGCCCGTTCGGCAGGCTTGGCCTGTTCGCTGTTCTGCGACGAGGAACTGGAAAGTGGACGCTTCCGCGCC
CGCCCGGAGTTTCCGGCAAACACCCAGGTGCTGTATCGCGGCTGGATGCTCACACCGGAAAACTACGCTCGC
CTGCACGGCGCGATCCTCGTCGCTGGCGGACGGCCCCTGACCAGTCCACAGCAATATCGGCACTGCCATTAC
TTGCCAGAGTGGTATCCGCTCTGTGAGGACCTCACGCCGGCGACCCTGTTCCTGTCCAGGAACGCCGACTTC
GAGGCAGTGTTGGCGCAAAGCCCGTGGCGCGCCTGGTTCGTCAAGGACCATGTGAAATCCCTGACCACCCAG
CGCGGCTCGAAGGCCACCAATGCTGCGGAAGTGCGGGAAGTCCTCGATTCGATCGAGCGTTATCGAGGCACC
ATCGAAGGCGGTGTATGCCTTCGGGAGTTCGAGGCGCTGCGTGCGGAAACCGAGGAACGCTACTTCGTTCTT
CACGGCCGCGCTCACGGGCGTCTCGATACCGTCCCGCCGCTAGTGGAACAGGTGGCACAACGTATCGATTGC
CCGTTCTTTTCCGTCGACGTGGTCGAGTCGACCAGTGGCGAGTTGCGCCTGATGGAACTCGGCGATGGCCAG
GTCTCCGACCGCAAGCAATGGCCCGCCGCACGCTTCGCGGCGATGCTGGCACAGGCATAG
Translation:
MHLLYPSAPDRSNAVDELFAEEYDAARSAGLACSLFCDEELESGRFRARPEFPANTQVLYRGWMLTPENYAR
LHGAILVAGGRPLTSPQQYRHCHYLPEWYPLCEDLTPATLFLSRNADFEAVLAQSPWRAWFVKDHVKSLTTQ
RGSKATNAAEVREVLDSIERYRGTIEGGVCLREFEALRAETEERYFVLHGRAHGRLDTVPPLVEQVAQRIDC
PFFSVDVVESTSGELRLMELGDGQVSDRKQWPAARFAAMLAQA*
AnnotationID:5621GeneID:5619
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 11:11:11
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
NO BLAST matches to this sequence in PAO1.

gi|68345289|gb|AAY92895.1|  hypothetical protein PFL_3629 [Pseudomonas fluorescens Pf-5]
     Length=308
     Score =  255 bits (652),  Expect = 9e-67
     Identities = 133/259 (51%), Positives = 164/259 (63%), Gaps = 0/259 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11201




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28373




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48621How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 547558Stop: 546779

          
Length: 780


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCACCTGCTTTACCCCTCCGCCCCCGATCGCAGCAACGCGGTCGATGAACTCTTCGCCGAGGAATATGAC 
GCGGCCCGTTCGGCAGGCTTGGCCTGTTCGCTGTTCTGCGACGAGGAACTGGAAAGTGGACGCTTCCGCGCC 
CGCCCGGAGTTTCCGGCAAACACCCAGGTGCTGTATCGCGGCTGGATGCTCACACCGGAAAACTACGCTCGC 
CTGCACGGCGCGATCCTCGTCGCTGGCGGACGGCCCCTGACCAGTCCACAGCAATATCGGCACTGCCATTAC 
TTGCCAGAGTGGTATCCGCTCTGTGAGGACCTCACGCCGGCGACCCTGTTCCTGTCCAGGAACGCCGACTTC 
GAGGCAGTGTTGGCGCAAAGCCCGTGGCGCGCCTGGTTCGTCAAGGACCATGTGAAATCCCTGACCACCCAG 
CGCGGCTCGAAGGCCACCAATGCTGCGGAAGTGCGGGAAGTCCTCGATTCGATCGAGCGTTATCGAGGCACC 
ATCGAAGGCGGTGTATGCCTTCGGGAGTTCGAGGCGCTGCGTGCGGAAACCGAGGAACGCTACTTCGTTCTT 
CACGGCCGCGCTCACGGGCGTCTCGATACCGTCCCGCCGCTAGTGGAACAGGTGGCACAACGTATCGATTGC 
CCGTTCTTTTCCGTCGACGTGGTCGAGTCGACCAGTGGCGAGTTGCGCCTGATGGAACTCGGCGATGGCCAG 
GTCTCCGACCGCAAGCAATGGCCCGCCGCACGCTTCGCGGCGATGCTGGCACAGGCATAG