ViewGene

Locus Name:
GeneID:
Location:

GeneID:5615
TrivialName: PA14_49720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49720
PAO1 Ortholog Locus:
Sequence Length:414
Protein Length:137
Start: 4423761
Stop: 4424174
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04523.1|AE004543_7 (AE004543) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 137/137 (100%), Positives = 137/137 (100%)
Sequence:
ATGTCACTGCCGCCGTACCTCCAGCCCGGCGACAAGGTCGTGTTGTACGACCAGCACTGCCGCTTCTGCACG
CTCTGGAGCGGTTTCCTGGCACGCCGCGCCGACCACCGGCTGAAGCTGCTTGCCGCGCAGTCCGCCGAAGGC
CTGGCGATTCTCGATTGGTTCGGGCTGGCACCCGATCATTTCGACACCTGGCTGTTCGTCGACGGCGCCTAC
GCCTGCGACGACAACGATGCCCTGCTCGAGGTGCTGCGCCTGTTGCCGGGCCCCTGGCGTCACCTGCGCTGG
CTGCGCCTGCTGCCAGCCTGGCTGCGCGACGAGTGCCACGAGGCGCTACGGCGCAACCGCTGGCGCTGGTTC
GGCCGCCAGCGCCAGCCCCTCCGTCGTCGCTCCTGGCGTCCCCGTCGGGCCTGA
Translation:
MSLPPYLQPGDKVVLYDQHCRFCTLWSGFLARRADHRLKLLAAQSAEGLAILDWFGLAPDHFDTWLFVDGAY
ACDDNDALLEVLRLLPGPWRHLRWLRLLPAWLRDECHEALRRNRWRWFGRQRQPLRRRSWRPRRA*
AnnotationID:5617GeneID:5615
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 18:06:58
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1134
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3011, pfam04134
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3011, Uncharacterized protein conserved in bacteria. Score: 130, 7e-32
pfam04134, DUF393, Protein of unknown function, DUF393. Score: 123, 6e-30
Genomic Context:
Comment:
Confirmed frame-shift results in truncation of first 36 aa of PAO1 PA1134.
ReferenceID:11195
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28365
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5615

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7901 PA1134_tr translation of PA1134 173 79.19 79.19 36 774.0
197329 gb|AAG04523.1|AE004543_7 (AE004543) hypothetical protein PA1134 [Pseudomonas aeruginosa PAO1] 173 79.19 79.19 36 774.0
197331 emb|CAC90386.1| (AJ414149) putative membrane protein [Yersinia pestis CO92] 141 36.87 56.73 4 252.0
197330 gb|AAM86156.1|AE013862_1 (AE013862) hypothetical [Yersinia pestis KIM] 162 32.09 49.38 25 252.0
GC ORFID: 48617How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 530147Stop: 529734
Length: 414
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1134 translation of PA1134Homolog Bit Score 302.0
Other Homologs: t_PA1134 translation of PA1134 (BLASTP 302)
GC ORF Sequence
ATGTCACTGCCGCCGTACCTCCAGCCCGGCGACAAGGTCGTGTTGTACGACCAGCACTGCCGCTTCTGCACG
CTCTGGAGCGGTTTCCTGGCACGCCGCGCCGACCACCGGCTGAAGCTGCTTGCCGCGCAGTCCGCCGAAGGC
CTGGCGATTCTCGATTGGTTCGGGCTGGCACCCGATCATTTCGACACCTGGCTGTTCGTCGACGGCGCCTAC
GCCTGCGACGACAACGATGCCCTGCTCGAGGTGCTGCGCCTGTTGCCGGGCCCCTGGCGTCACCTGCGCTGG
CTGCGCCTGCTGCCAGCCTGGCTGCGCGACGAGTGCCACGAGGCGCTACGGCGCAACCGCTGGCGCTGGTTC
GGCCGCCAGCGCCAGCCCCTCCGTCGTCGCTCCTGGCGTCCCCGTCGGGCCTGA