ViewGene

Locus Name:
GeneID:
Location:

GeneID:561
TrivialName: PA14_39020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39020
PAO1 Ortholog Locus:PA1972
Sequence Length:1704
Protein Length:567
Start: 3480598
Stop: 3478895
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05360.1|AE004623_10 (AE004623) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 565/567 (99%), Positives = 565/567 (99%)
Sequence:
ATGTCGAAAGCCCGCGCCGTCCGTCCCGAACTGCTGACCCTGCTGGTCAGCCTCGCCTTCCTGCTGTTCTAC
AACCTGCCGCTGTGGCAACGCCTGCTGGCGATCACCCCGGCGGGCTGGCAGGGCCTCGGCATGATGCTGGCG
GTCGGCCTGATGATCGCCGCGATCTTCAACCTGGCGCTGACCCTGCTGGCGTTCCGCTGGCTGCTCAAGCCG
GCGCTGACCCTGCTGATCCTGGCGGCCGCCGGTACCACCTACTTCATGACCCAGTACGGCGTGCTGATGGAC
GTCGGCATGCTGCGCAACGTCATGCAGACCAACCCGGCCGAGGTCGCCGACCTGCTTTCGCCGAAGCTCGCC
GTCTACCTGGCGTTGCTTGGCGCGCTGCCGGTCTGGCTGCTGTGGCGCACGCCGGTGCGCTACCGGCCGTGG
CCACGCGAGCTGCTGAGCAAGCTGCTGGTGGCGCTCGCCTGCCTGGCGCTGCTCGCCGGGGTGGCGCTGGCC
AATTATCAGGGGCTGTCCTCGCTGTTCCGCAACAACAAGGAACTGCGCCTGCAGGTCACCCCGAGCAACCTG
GTCGGCGCCGCCATCGGCTACGCCAAGGGCCAGGCCCAGGCCGCCAGCCAGCCACTCCGGCCGATCGCCGTC
GATGCCCGGCGCGCCGACCTGTGGCAGGGCCATGCGCGCAAGTCGCTGACCGTGCTGGTGGTGGGCGAGAGC
GCGCGGGCACAGAACTTCGGCCTCAACGGCTACGCTCGCGAGACCAACCCGCGGCTGAAGGCCGAGGAGGGC
CTGATCAACTTCTCCAATGTGCACTCCTGCGGTACCGAGACCGCGGTGTCGGTGCCCTGCATGTTCTCCAAC
CTGGGCCGCGCGGACTACAGCGACGCTCGCGCGCGCACCCAGGAAGGCCTTCTCGATGTGTTGCAGCGCGCA
GGCCTGCGGGTCCTGTGGCGGGACAACCAGTCCGGCTGCAAGGGCACCTGCGACCGCGTCGCCTTCCAGGAC
CTGAGCGAGAGCAAGGATCCGGCCCTGTGCGCCGGCGGCGAGTGTCATGACGAGATCCTCCTGCGCGACTTG
CAGGCCTTCATCGACGGGCTGCAACAGGACACCGTGCTGGTCCTGCACCAGATGGGCAGCCACGGCCCGGCC
TACTTCAAGCGTTATCCCAGGGAGTACGAGAAGTTCACCCCGGTCTGCGCCAGCAACGACTTCAGCGCCTGC
TCGCGGGACAGCATCATCAACGGCTACGACAACACCCTGCTGTACACCGACCACGTGCTGGCCAGCCTGATC
GACCTGCTGCGCAAGAACGAAGAGCGCATCGATACCGGCATGCTCTACCTCTCCGACCATGGCGAGTCGCTC
GGCGAGTACAACCTCTACCTGCATGGCACGCCTTACCTGCTGGCGCCGGACCAGCAGAAGCACGTCGGCATG
CTGGCCTGGTTCTCGCCCGGCTACCAGAGCGCCTTCGGCCTCGACAGTGGCTGCCTGCGCCAGCGCAGCAAC
GAGGAGCTGTCCCAGGACAACCTGTTCCACTCGATGCTCGGCCTGCTGGAAGTGCGCACCGGCGCCTACGAT
CCCGGCCTCGACCTGTTCGCCCCGTGCCGTGCGCCCGAGGTCCTGCAGGCGCTCAAGGCCGACGGCGGACGG
GCGCTGTACTCCGAGGAAGCGTCTGGCCAGGAGCCGCCGGCTTCCTGA
Translation:
MSKARAVRPELLTLLVSLAFLLFYNLPLWQRLLAITPAGWQGLGMMLAVGLMIAAIFNLALTLLAFRWLLKP
ALTLLILAAAGTTYFMTQYGVLMDVGMLRNVMQTNPAEVADLLSPKLAVYLALLGALPVWLLWRTPVRYRPW
PRELLSKLLVALACLALLAGVALANYQGLSSLFRNNKELRLQVTPSNLVGAAIGYAKGQAQAASQPLRPIAV
DARRADLWQGHARKSLTVLVVGESARAQNFGLNGYARETNPRLKAEEGLINFSNVHSCGTETAVSVPCMFSN
LGRADYSDARARTQEGLLDVLQRAGLRVLWRDNQSGCKGTCDRVAFQDLSESKDPALCAGGECHDEILLRDL
QAFIDGLQQDTVLVLHQMGSHGPAYFKRYPREYEKFTPVCASNDFSACSRDSIINGYDNTLLYTDHVLASLI
DLLRKNEERIDTGMLYLSDHGESLGEYNLYLHGTPYLLAPDQQKHVGMLAWFSPGYQSAFGLDSGCLRQRSN
EELSQDNLFHSMLGLLEVRTGAYDPGLDLFAPCRAPEVLQALKADGGRALYSEEASGQEPPAS*
AnnotationID:570GeneID:561
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 16:04:36
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA1972
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2194
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57389.1| (AE016870) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 547

 Score =  699 bits (1803), Expect = 0.0
 Identities = 340/535 (63%), Positives = 405/535 (75%)

>gb|AAM40416.1| (AE012211) inner membrane protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 551

 Score =  455 bits (1170), Expect = e-127
 Identities = 245/532 (46%), Positives = 328/532 (61%), Gaps = 8/532 (1%)

Structural Features:
COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase 
CD-Length = 555 residues,  99.5% aligned
Score =  571 bits (1473), Expect = 8e-164
Identities = 227/559 (40%), Positives = 315/559 (56%), Gaps = 18/559 (3%)
Genomic Context:
Comment:
ReferenceID:1125
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18267
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32752
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:561_cdd.html
URL:
Homologs By Global Alignment
Gene ID:561

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
965 PA1972_tr translation of PA1972 567 99.64 99.64 0 2921.0
38335 gb|AAG05360.1|AE004623_10 (AE004623) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 567 99.64 99.64 0 2921.0
38336 gb|AAO57389.1| (AE016870) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 567 60.67 72.31 20 1801.0
38338 gb|AAN70165.1|AE016655_10 (AE016791) membrane protein, putative [Pseudomonas putida KT2440] 568 58.80 72.00 24 1739.0
38337 gb|AAO58999.1| (AE016876) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 567 58.55 72.66 18 1765.0
GC ORFID: 43563How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1972Glimmer Score:
Start: 1473313Stop: 1475016
Length: 1704
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1972 translation of PA1972Homolog Bit Score 1129.0
Other Homologs: t_PA1972 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGAAAGCCCGCGCCGTCCGTCCCGAACTGCTGACCCTGCTGGTCAGCCTCGCCTTCCTGCTGTTCTAC
AACCTGCCGCTGTGGCAACGCCTGCTGGCGATCACCCCGGCGGGCTGGCAGGGCCTCGGCATGATGCTGGCG
GTCGGCCTGATGATCGCCGCGATCTTCAACCTGGCGCTGACCCTGCTGGCGTTCCGCTGGCTGCTCAAGCCG
GCGCTGACCCTGCTGATCCTGGCGGCCGCCGGTACCACCTACTTCATGACCCAGTACGGCGTGCTGATGGAC
GTCGGCATGCTGCGCAACGTCATGCAGACCAACCCGGCCGAGGTCGCCGACCTGCTTTCGCCGAAGCTCGCC
GTCTACCTGGCGTTGCTTGGCGCGCTGCCGGTCTGGCTGCTGTGGCGCACGCCGGTGCGCTACCGGCCGTGG
CCACGCGAGCTGCTGAGCAAGCTGCTGGTGGCGCTCGCCTGCCTGGCGCTGCTCGCCGGGGTGGCGCTGGCC
AATTATCAGGGGCTGTCCTCGCTGTTCCGCAACAACAAGGAACTGCGCCTGCAGGTCACCCCGAGCAACCTG
GTCGGCGCCGCCATCGGCTACGCCAAGGGCCAGGCCCAGGCCGCCAGCCAGCCACTCCGGCCGATCGCCGTC
GATGCCCGGCGCGCCGACCTGTGGCAGGGCCATGCGCGCAAGTCGCTGACCGTGCTGGTGGTGGGCGAGAGC
GCGCGGGCACAGAACTTCGGCCTCAACGGCTACGCTCGCGAGACCAACCCGCGGCTGAAGGCCGAGGAGGGC
CTGATCAACTTCTCCAATGTGCACTCCTGCGGTACCGAGACCGCGGTGTCGGTGCCCTGCATGTTCTCCAAC
CTGGGCCGCGCGGACTACAGCGACGCTCGCGCGCGCACCCAGGAAGGCCTTCTCGATGTGTTGCAGCGCGCA
GGCCTGCGGGTCCTGTGGCGGGACAACCAGTCCGGCTGCAAGGGCACCTGCGACCGCGTCGCCTTCCAGGAC
CTGAGCGAGAGCAAGGATCCGGCCCTGTGCGCCGGCGGCGAGTGTCATGACGAGATCCTCCTGCGCGACTTG
CAGGCCTTCATCGACGGGCTGCAACAGGACACCGTGCTGGTCCTGCACCAGATGGGCAGCCACGGCCCGGCC
TACTTCAAGCGTTATCCCAGGGAGTACGAGAAGTTCACCCCGGTCTGCGCCAGCAACGACTTCAGCGCCTGC
TCGCGGGACAGCATCATCAACGGCTACGACAACACCCTGCTGTACACCGACCACGTGCTGGCCAGCCTGATC
GACCTGCTGCGCAAGAACGAAGAGCGCATCGATACCGGCATGCTCTACCTCTCCGACCATGGCGAGTCGCTC
GGCGAGTACAACCTCTACCTGCATGGCACGCCTTACCTGCTGGCGCCGGACCAGCAGAAGCACGTCGGCATG
CTGGCCTGGTTCTCGCCCGGCTACCAGAGCGCCTTCGGCCTCGACAGTGGCTGCCTGCGCCAGCGCAGCAAC
GAGGAGCTGTCCCAGGACAACCTGTTCCACTCGATGCTCGGCCTGCTGGAAGTGCGCACCGGCGCCTACGAT
CCCGGCCTCGACCTGTTCGCCCCGTGCCGTGCGCCCGAGGTCCTGCAGGCGCTCAAGGCCGACGGCGGACGG
GCGCTGTACTCCGAGGAAGCGTCTGGCCAGGAGCCGCCGGCTTCCTGA