ViewGene
Locus Name:
GeneID:
Location:

GeneID:5608
TrivialName: PA14_50000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50000
PAO1 Ortholog Locus:
Sequence Length:222
Protein Length:73
Start: 4444925
Stop: 4445146
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO57651.1| (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 49/70 (70%), Positives = 61/70 (87%)
Sequence:
ATGCCTGGCCATCCCGATCCACTGCACGGCGTCACCCTGGAAAAACTGCTCACCGAACTGGTCGCCCACCAC
GGCTGGGCGGAGCTTGGCAAACGGGTCGACATTCGTTGTTTCAGGAACGACCCGAGCATCAAGTCCAGCCTC
GCCTTCCTGCGCAAGACGCCCTGGGCCCGGGAAAAGGTCGAGGCGCTCTACGTCCAGCTCAAACGCAACCAA
GGCTGA
Translation:
MPGHPDPLHGVTLEKLLTELVAHHGWAELGKRVDIRCFRNDPSIKSSLAFLRKTPWAREKVEALYVQLKRNQ
G*
AnnotationID:5610GeneID:5608
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:19
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84328585|ref|ZP_00976589.1|  COG4628: Uncharacterized conserved protein [Pseudomonas aeruginosa 
2192]
 gi|84322106|ref|ZP_00970451.1|  COG4628: Uncharacterized conserved protein [Pseudomonas aeruginosa 
C3719]
Length=73

 Score =  155 bits (392),  Expect = 5e-37
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

gi|94415977|ref|ZP_01295809.1|  hypothetical protein PaerP_01002306 [Pseudomonas aeruginosa PA7]
Length=73

 Score =  142 bits (357),  Expect = 5e-33
 Identities = 66/73 (90%), Positives = 70/73 (95%), Gaps = 0/73 (0%)

gi|63257863|gb|AAY38959.1|  conserved hypothetical protein [Pseudomonas syringae pv. syringae 
B728a]
 gi|66047156|ref|YP_236997.1|  hypothetical protein Psyr_3929 [Pseudomonas syringae pv. syringae 
B728a]
Length=102

 Score =  112 bits (279),  Expect = 6e-24
 Identities = 50/70 (71%), Positives = 62/70 (88%), Gaps = 0/70 (0%)






 
Structural Features:
COG4628, Uncharacterized conserved protein [Function unknown]
             CD-Length = 136 residues, only  47.8% aligned
             Score = 99.8 bits (248), Expect = 6e-23






   
Genomic Context:






   
Comment:


















    ReferenceID:11183




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28353




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5608
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197328
                           gb|AAQ57966.1|
                           (AE016910) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           86
                           53.48
                           65.11
                           13
                           246.0
     

     
     
197327
                           gb|AAO57651.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           122
                           40.16
                           50.00
                           49
                           272.0
     

     






      

          
GC ORFID: 48610How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 508983Stop: 508762

          
Length: 222


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold5_revised_gene6247 related to: gi|16121453|ref|NP_404766.1| (NC_003143) conserved hypothetical protein [Yersinia pestis] emb|CAC89998.1| (AJ414146) conserved hypothetical protein [Yersinia pestis]Homolog Bit Score 112.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6247 related to: gi|16121453|ref|NP_404766.1| (NC_003143) conserved hypothetical protein [Yersinia pestis] emb|CAC89998.1| (AJ414146) conserved hypothetical protein [Yersinia pestis] (BLASTP 112), psyr_15may02_Scaffold5_revised_gene6247 related to: gi|16121453|ref|NP_404766.1| (NC_003143) conserved hypothetical protein [Yersinia pestis] emb|CAC89998.1| (AJ414146) conserved hypothetical protein [Yersinia pestis] (BLASTP 109)

          
GC ORF Sequence

           
ATGCCTGGCCATCCCGATCCACTGCACGGCGTCACCCTGGAAAAACTGCTCACCGAACTGGTCGCCCACCAC 
GGCTGGGCGGAGCTTGGCAAACGGGTCGACATTCGTTGTTTCAGGAACGACCCGAGCATCAAGTCCAGCCTC 
GCCTTCCTGCGCAAGACGCCCTGGGCCCGGGAAAAGGTCGAGGCGCTCTACGTCCAGCTCAAACGCAACCAA 
GGCTGA