ViewGene

Locus Name:
GeneID:
Location:

GeneID:560
TrivialName: PA14_17810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17810
PAO1 Ortholog Locus:PA3593
Sequence Length:1728
Protein Length:575
Start: 1529470
Stop: 1531197
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06981.1|AE004779_13 (AE004779) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 572/575 (99%), Positives = 574/575 (99%)
Sequence:
ATGACCGCCATGCCCGAAGTACCTCGCGAAGATACGCTGAACATCCCCGACAGCCGTGGGCTGAATCTCTAC
ACCTGCGATCCGGCCCTGGAGCGGCTGCTGGAGGTATACCTGCCGCCGGCGTTGCTCGCCGAATGGCGGCCG
CTCCTCGAACGGCTCGGCGCCCGTGCCGGCGGCGAGCTGGACGTGCTGGCGCTGGCGGCGGACAAGAACCCG
CCGGTGCTGGCGCCGCGCACCCGCCGCGGCGAGGATTTGCAGAGCATTCGCAAGCATCCGGACTACGTCGCC
CTCGAACGGGTGGCCTATGCCGAACTCGGCCTGGCTTCCATGAGCCATCGCCCGGACGGCCCACCGCCGCTG
GTCAAGTATGCGCTCACCCACCTGTTCGTACAGGCCGAGTTCGGCctTTGCTGCCCGGTCAGCATGACCGAC
TCGCTTACCCGCACCCTGCGCAGGTTCGGCGCGCCGGAACTGGTTGAGCGCTATCTGCCGTCCCTCGCCTCG
CGGGATTTCGACGAGCTGTTCCAGGGCGCCATGTTCATGACCGAGCAGGCCGCCGGCTCCGACGTGGCGCGG
ACCCGTACCGTGGCGCGGGAGGAGGGCGGCGAGTGGAAGCTCTACGGCGACAAGTGGTTCTGCTCCAACCCG
GACGCCGACCTGGCGATGGTCCTGGCCCGCCCCGAAGGCGCGCCGGAAGGAATGAAGGGCGTGACCCTGTTC
CTGTTGCCGAAGGTCCGCGAGGACGGTACGCGCAACGCCTATCGCATCGTCCGCCTGAAGGACAAGCTGGGC
AGCCGCTCCATGGCCAGCGGCGAAGTCCGCCTGGAAGGCGCCAGCGCCTACCTGATCGGCGAGATCGGCCGC
GGCTTCCAGCAGATGGCCGACATGGTCAACATGTCGCGCCTGTCCAACGGCGTGCGCGCCGCCGGGCTGATG
CGCCGGGCGCTGAGCGAGGCGCTGTTCGTCGCCCGCCATCGGCGCGCCTTCGGCAAGCACCTGATCGACATG
CCGCTGATGCAGAAGCAGTTGCTGAAGATGATGCTGCCCACCGAACAGGCGCGCTCGATGTTCATGCAGATC
GCCACGCTGCTGCCGCGCGCCGATGGCGGCGAGGTCGAGGCGCAGAAATGCGTGCGGATCCTCACCCCGCTG
ATCAAGTTCCGCGCCTGCCGCGATGCGCGACGGGTCACCGGCGACGCCATGGAGGTGCGCGGCGGGGTCGGC
TACATCGaggAGTGGAGCGACCCGCGCCTGGTGCGCGACGCCCACCTGGGGTCGATCTGGGAGGGCACCAGC
AACATCGTGGCGCTGGACGTCGCCCGTGCGGTGAGCCGCGAACAGGCGCTCGAACCCTTGCAGCGCCACCTG
CGCCGGCTGCTGGATGACAGCGATCTGCCAGGGGACGCCCGCGACCTCTTCGACGAACTGCTGGTGCGAGTG
GTCGCGACCATGGCCGACGTCGCCGAGCGCCGCCAGGACGAGCAGGTGCGCCAGGCCGGCAGCGCCCTCTAC
CACCTGTGCACGGCGATCTTCATGGCCTGGGAAGCCAGCCGCCAGGCACCCGACCAGCGCCGCCTGGCCCTG
GCCTTCCTGGTCGCCCGGCACAAGCTGCTGCCGCGCGACCCGCTGCACCTGGAGGGCTGGACCGACCAGGCC
GAACTGCTGGCCAGGGTGGTCGGCGAGGTGCCGCTGAGCCAGGCCGAAGCCATGCAATTGCTGCCGGCCTGA
Translation:
MTAMPEVPREDTLNIPDSRGLNLYTCDPALERLLEVYLPPALLAEWRPLLERLGARAGGELDVLALAADKNP
PVLAPRTRRGEDLQSIRKHPDYVALERVAYAELGLASMSHRPDGPPPLVKYALTHLFVQAEFGLCCPVSMTD
SLTRTLRRFGAPELVERYLPSLASRDFDELFQGAMFMTEQAAGSDVARTRTVAREEGGEWKLYGDKWFCSNP
DADLAMVLARPEGAPEGMKGVTLFLLPKVREDGTRNAYRIVRLKDKLGSRSMASGEVRLEGASAYLIGEIGR
GFQQMADMVNMSRLSNGVRAAGLMRRALSEALFVARHRRAFGKHLIDMPLMQKQLLKMMLPTEQARSMFMQI
ATLLPRADGGEVEAQKCVRILTPLIKFRACRDARRVTGDAMEVRGGVGYIEEWSDPRLVRDAHLGSIWEGTS
NIVALDVARAVSREQALEPLQRHLRRLLDDSDLPGDARDLFDELLVRVVATMADVAERRQDEQVRQAGSALY
HLCTAIFMAWEASRQAPDQRRLALAFLVARHKLLPRDPLHLEGWTDQAELLARVVGEVPLSQAEAMQLLPA*
AnnotationID:569GeneID:560
AnnotatorUID: diggins
Modification Date/Time: 2005-07-03 08:08:42
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA3593
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative oxidoreductase
Functional Category Confidence Code:5
COGs:COG1960,KOG0139
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE38896.1| (BX640434) putative oxidoreductase [Bordetella parapertussis]
          Length = 569

 Score =  606 bits (1562), Expect = e-172
 Identities = 326/546 (59%), Positives = 388/546 (71%), Gaps = 10/546 (1%)

>emb|CAE31596.1| (BX640440) probable acyl-CoA dehydrogenase [Bordetella
           bronchiseptica]
          Length = 552

 Score =  595 bits (1534), Expect = e-169
 Identities = 321/542 (59%), Positives = 381/542 (70%), Gaps = 8/542 (1%)

>emb|CAE31480.1| (BX640440) probable acyl-CoA dehydrogenase [Bordetella
           bronchiseptica]
          Length = 615

 Score =  512 bits (1319), Expect = e-144
 Identities = 272/567 (47%), Positives = 378/567 (66%), Gaps = 10/567 (1%)
Structural Features:
COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]
CD-Length = 393 residues,  93.9% aligned
Score =  200 bits (509), Expect = 9e-52
Identities = 127/388 (32%), Positives = 182/388 (46%), Gaps = 32/388 (8%)

KOG0139, Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
CD-Length = 398 residues,  80.4% aligned
Score =  152 bits (385), Expect = 2e-37
Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 28/339 (8%)
Genomic Context:
Comment:
ReferenceID:1123
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18265
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31949
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:560_cdd.html
URL:
Homologs By Global Alignment
Gene ID:560

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
964 PA3593_tr translation of PA3593 575 99.47 99.82 0 2926.0
38325 gb|AAG06981.1|AE004779_13 (AE004779) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 575 99.47 99.82 0 2926.0
38326 emb|CAE38896.1| (BX640434) putative oxidoreductase [Bordetella parapertussis] 595 55.96 66.89 46 1574.0
38327 emb|CAE34410.1| (BX640449) putative oxidoreductase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 595 55.96 66.72 46 1572.0
38328 emb|CAE31596.1| (BX640440) probable acyl-CoA dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 588 55.10 65.30 49 1533.0
GC ORFID: 43562How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3593Glimmer Score:
Start: 3424466Stop: 3422739
Length: 1728
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3593 translation of PA3593Homolog Bit Score 1131.0
Other Homologs: t_PA3593 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGCCATGCCCGAAGTACCTCGCGAAGATACGCTGAACATCCCCGACAGCCGTGGGCTGAATCTCTAC
ACCTGCGATCCGGCCCTGGAGCGGCTGCTGGAGGTATACCTGCCGCCGGCGTTGCTCGCCGAATGGCGGCCG
CTCCTCGAACGGCTCGGCGCCCGTGCCGGCGGCGAGCTGGACGTGCTGGCGCTGGCGGCGGACAAGAACCCG
CCGGTGCTGGCGCCGCGCACCCGCCGCGGCGAGGATTTGCAGAGCATTCGCAAGCATCCGGACTACGTCGCC
CTCGAACGGGTGGCCTATGCCGAACTCGGCCTGGCTTCCATGAGCCATCGCCCGGACGGCCCACCGCCGCTG
GTCAAGTATGCGCTCACCCACCTGTTCGTACAGGCCGAGTTCGGCctTTGCTGCCCGGTCAGCATGACCGAC
TCGCTTACCCGCACCCTGCGCAGGTTCGGCGCGCCGGAACTGGTTGAGCGCTATCTGCCGTCCCTCGCCTCG
CGGGATTTCGACGAGCTGTTCCAGGGCGCCATGTTCATGACCGAGCAGGCCGCCGGCTCCGACGTGGCGCGG
ACCCGTACCGTGGCGCGGGAGGAGGGCGGCGAGTGGAAGCTCTACGGCGACAAGTGGTTCTGCTCCAACCCG
GACGCCGACCTGGCGATGGTCCTGGCCCGCCCCGAAGGCGCGCCGGAAGGAATGAAGGGCGTGACCCTGTTC
CTGTTGCCGAAGGTCCGCGAGGACGGTACGCGCAACGCCTATCGCATCGTCCGCCTGAAGGACAAGCTGGGC
AGCCGCTCCATGGCCAGCGGCGAAGTCCGCCTGGAAGGCGCCAGCGCCTACCTGATCGGCGAGATCGGCCGC
GGCTTCCAGCAGATGGCCGACATGGTCAACATGTCGCGCCTGTCCAACGGCGTGCGCGCCGCCGGGCTGATG
CGCCGGGCGCTGAGCGAGGCGCTGTTCGTCGCCCGCCATCGGCGCGCCTTCGGCAAGCACCTGATCGACATG
CCGCTGATGCAGAAGCAGTTGCTGAAGATGATGCTGCCCACCGAACAGGCGCGCTCGATGTTCATGCAGATC
GCCACGCTGCTGCCGCGCGCCGATGGCGGCGAGGTCGAGGCGCAGAAATGCGTGCGGATCCTCACCCCGCTG
ATCAAGTTCCGCGCCTGCCGCGATGCGCGACGGGTCACCGGCGACGCCATGGAGGTGCGCGGCGGGGTCGGC
TACATCGaggAGTGGAGCGACCCGCGCCTGGTGCGCGACGCCCACCTGGGGTCGATCTGGGAGGGCACCAGC
AACATCGTGGCGCTGGACGTCGCCCGTGCGGTGAGCCGCGAACAGGCGCTCGAACCCTTGCAGCGCCACCTG
CGCCGGCTGCTGGATGACAGCGATCTGCCAGGGGACGCCCGCGACCTCTTCGACGAACTGCTGGTGCGAGTG
GTCGCGACCATGGCCGACGTCGCCGAGCGCCGCCAGGACGAGCAGGTGCGCCAGGCCGGCAGCGCCCTCTAC
CACCTGTGCACGGCGATCTTCATGGCCTGGGAAGCCAGCCGCCAGGCACCCGACCAGCGCCGCCTGGCCCTG
GCCTTCCTGGTCGCCCGGCACAAGCTGCTGCCGCGCGACCCGCTGCACCTGGAGGGCTGGACCGACCAGGCC
GAACTGCTGGCCAGGGTGGTCGGCGAGGTGCCGCTGAGCCAGGCCGAAGCCATGCAATTGCTGCCGGCCTGA