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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG06981.1|AE004779_13 (AE004779) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 572/575 (99%), Positives = 574/575 (99%)
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Sequence:
ATGACCGCCATGCCCGAAGTACCTCGCGAAGATACGCTGAACATCCCCGACAGCCGTGGGCTGAATCTCTAC
ACCTGCGATCCGGCCCTGGAGCGGCTGCTGGAGGTATACCTGCCGCCGGCGTTGCTCGCCGAATGGCGGCCG
CTCCTCGAACGGCTCGGCGCCCGTGCCGGCGGCGAGCTGGACGTGCTGGCGCTGGCGGCGGACAAGAACCCG
CCGGTGCTGGCGCCGCGCACCCGCCGCGGCGAGGATTTGCAGAGCATTCGCAAGCATCCGGACTACGTCGCC
CTCGAACGGGTGGCCTATGCCGAACTCGGCCTGGCTTCCATGAGCCATCGCCCGGACGGCCCACCGCCGCTG
GTCAAGTATGCGCTCACCCACCTGTTCGTACAGGCCGAGTTCGGCctTTGCTGCCCGGTCAGCATGACCGAC
TCGCTTACCCGCACCCTGCGCAGGTTCGGCGCGCCGGAACTGGTTGAGCGCTATCTGCCGTCCCTCGCCTCG
CGGGATTTCGACGAGCTGTTCCAGGGCGCCATGTTCATGACCGAGCAGGCCGCCGGCTCCGACGTGGCGCGG
ACCCGTACCGTGGCGCGGGAGGAGGGCGGCGAGTGGAAGCTCTACGGCGACAAGTGGTTCTGCTCCAACCCG
GACGCCGACCTGGCGATGGTCCTGGCCCGCCCCGAAGGCGCGCCGGAAGGAATGAAGGGCGTGACCCTGTTC
CTGTTGCCGAAGGTCCGCGAGGACGGTACGCGCAACGCCTATCGCATCGTCCGCCTGAAGGACAAGCTGGGC
AGCCGCTCCATGGCCAGCGGCGAAGTCCGCCTGGAAGGCGCCAGCGCCTACCTGATCGGCGAGATCGGCCGC
GGCTTCCAGCAGATGGCCGACATGGTCAACATGTCGCGCCTGTCCAACGGCGTGCGCGCCGCCGGGCTGATG
CGCCGGGCGCTGAGCGAGGCGCTGTTCGTCGCCCGCCATCGGCGCGCCTTCGGCAAGCACCTGATCGACATG
CCGCTGATGCAGAAGCAGTTGCTGAAGATGATGCTGCCCACCGAACAGGCGCGCTCGATGTTCATGCAGATC
GCCACGCTGCTGCCGCGCGCCGATGGCGGCGAGGTCGAGGCGCAGAAATGCGTGCGGATCCTCACCCCGCTG
ATCAAGTTCCGCGCCTGCCGCGATGCGCGACGGGTCACCGGCGACGCCATGGAGGTGCGCGGCGGGGTCGGC
TACATCGaggAGTGGAGCGACCCGCGCCTGGTGCGCGACGCCCACCTGGGGTCGATCTGGGAGGGCACCAGC
AACATCGTGGCGCTGGACGTCGCCCGTGCGGTGAGCCGCGAACAGGCGCTCGAACCCTTGCAGCGCCACCTG
CGCCGGCTGCTGGATGACAGCGATCTGCCAGGGGACGCCCGCGACCTCTTCGACGAACTGCTGGTGCGAGTG
GTCGCGACCATGGCCGACGTCGCCGAGCGCCGCCAGGACGAGCAGGTGCGCCAGGCCGGCAGCGCCCTCTAC
CACCTGTGCACGGCGATCTTCATGGCCTGGGAAGCCAGCCGCCAGGCACCCGACCAGCGCCGCCTGGCCCTG
GCCTTCCTGGTCGCCCGGCACAAGCTGCTGCCGCGCGACCCGCTGCACCTGGAGGGCTGGACCGACCAGGCC
GAACTGCTGGCCAGGGTGGTCGGCGAGGTGCCGCTGAGCCAGGCCGAAGCCATGCAATTGCTGCCGGCCTGA
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Translation:
MTAMPEVPREDTLNIPDSRGLNLYTCDPALERLLEVYLPPALLAEWRPLLERLGARAGGELDVLALAADKNP
PVLAPRTRRGEDLQSIRKHPDYVALERVAYAELGLASMSHRPDGPPPLVKYALTHLFVQAEFGLCCPVSMTD
SLTRTLRRFGAPELVERYLPSLASRDFDELFQGAMFMTEQAAGSDVARTRTVAREEGGEWKLYGDKWFCSNP
DADLAMVLARPEGAPEGMKGVTLFLLPKVREDGTRNAYRIVRLKDKLGSRSMASGEVRLEGASAYLIGEIGR
GFQQMADMVNMSRLSNGVRAAGLMRRALSEALFVARHRRAFGKHLIDMPLMQKQLLKMMLPTEQARSMFMQI
ATLLPRADGGEVEAQKCVRILTPLIKFRACRDARRVTGDAMEVRGGVGYIEEWSDPRLVRDAHLGSIWEGTS
NIVALDVARAVSREQALEPLQRHLRRLLDDSDLPGDARDLFDELLVRVVATMADVAERRQDEQVRQAGSALY
HLCTAIFMAWEASRQAPDQRRLALAFLVARHKLLPRDPLHLEGWTDQAELLARVVGEVPLSQAEAMQLLPA*
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AnnotationID:569 | GeneID:560 |
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Modification Date/Time: |
2005-07-03 08:08:42 |
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GeneProduct: | putative acyl-CoA dehydrogenase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (20) Putative enzymes |
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Alternate Gene Product Name: | putative oxidoreductase |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | fatty acid and phospholipid metabolism |
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Homology: | >emb|CAE38896.1| (BX640434) putative oxidoreductase [Bordetella parapertussis]
Length = 569
Score = 606 bits (1562), Expect = e-172
Identities = 326/546 (59%), Positives = 388/546 (71%), Gaps = 10/546 (1%)
>emb|CAE31596.1| (BX640440) probable acyl-CoA dehydrogenase [Bordetella
bronchiseptica]
Length = 552
Score = 595 bits (1534), Expect = e-169
Identities = 321/542 (59%), Positives = 381/542 (70%), Gaps = 8/542 (1%)
>emb|CAE31480.1| (BX640440) probable acyl-CoA dehydrogenase [Bordetella
bronchiseptica]
Length = 615
Score = 512 bits (1319), Expect = e-144
Identities = 272/567 (47%), Positives = 378/567 (66%), Gaps = 10/567 (1%)
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Structural Features: | COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]
CD-Length = 393 residues, 93.9% aligned
Score = 200 bits (509), Expect = 9e-52
Identities = 127/388 (32%), Positives = 182/388 (46%), Gaps = 32/388 (8%)
KOG0139, Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
CD-Length = 398 residues, 80.4% aligned
Score = 152 bits (385), Expect = 2e-37
Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 28/339 (8%)
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