ViewGene

Locus Name:
GeneID:
Location:

GeneID:56
TrivialName: PA14_03220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03220
PAO1 Ortholog Locus:PA0262
Sequence Length:3060
Protein Length:1019
Start: 288272
Stop: 285213
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03651.1|AE004464_4 (AE004464) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1009/1019 (99%), Positives = 1015/1019 (99%)
Sequence:
ATGCGTCAAAGGGACCTGAAATTCACCTTCGTCGTCGGCGAAGGGAAACTCGCGTTCGATGTCGTCGAGTTC
GAACTGGAAGAAGCGCTCTGCGAGCCTTTCCGCCTGAACCTGAAGCTGGCCAGCGACAAGAACGCCATCGAT
TTCAAGCAGGTACTCGACCAGCCGGGCACCTTCACCCTCTGGCAGGACGGCCGTCCGGCCCGCTACGTCCAT
GGCATCGTCAGCCACTTCACCCAGGGCAGCTCGGGTTTTCGCCGGACCCGCTACGAACTGCTGCTGGAACCG
CAGTTGGCGCGCCTGGAGCTGTGCTGCAACTGGCGGATCTTCCAGGAGAAGAGTGTTCCGGAGATTCTCCAG
GCGCTGCTCAAGGAACACCGGGTGCTCGACTACGAACAGCGCATCTACCATGAGCACCTGCCGCGCGAATAC
TGCGTGCAGGCCGGCGACAGCGATCACTACCTGCACGACCGGCTGGCTTTCgaggaaggCCTGGTCTACTAC
TTCCGCTTCGACGAACACCGCCACACCCTGGTCTGCAGCGACCGGCTCTACGTCCAGGAGCGTATCGCCGGC
GGCCCGGTACTGTTCAGCGCCCAGCCGGAGGGCGACAACCCGCAGCCGGTGCTTCATTCCTTCCGCTACAGC
GAAAATGTTCGTACGGCTCGACAGACCCAGCGGGACTACAGCTTCAAGCGCCCGACCTACGACCAGGAGCAT
CATCTCGCTGGCGAGGCGCTCGAGCATCAGGACTCGTCCTACGAGCGCTACGACTACCCCGGTCGCTACAAG
CAGAGCGGCGCGGGCCGGCCTTTCAGCGAAAGCCGCCTCAGAGGACATCGGCGCGATGCACGGGTGGCATCG
GTCAGCGGCGACGACCCGCGGCTGATCCCGGGCCACGCCTTTGCCCTGGAAGGTCATCCGCGTGCCGACTTC
AACGCCTGGTGGCGGCCGGTGCGGGTGGTCCATCGCGGCACCCAGTATGCCGGCCAGGAGGAAGAGTCCGCC
GACGCCCCTCTGGGGGTGAGCTACGACCTGCGCGCCGAACTGGTGCCCGAGGACGTCGAATGGCGTCCCGCA
CCGCTGCCTCGGCCGCGTATCGATGGTCCGCAGATCGCGACGGTAGTCGGCCCGGCAGGGGAAGAGATCCAT
TGCGACGAGTGGGGGCGGGTGAAAGTCCAGTTCCCCTGGGATCGCGAGGGACGTCACGATGAGTTCAGTACC
TGCTGGATACGGGTCGCGCAGAACTGGGCGGGTGCCGACTGGGGAAACATGGCGATCCCGCGGATTGGCCAG
GAGGTGATCGTCGATTACCTGGACGGCGACTGCGACCAGCCGATCGTCACCGGGCGCACCTACCGGGCGACC
AACCGACCACCCTACGCGCTGCCCGACCACAAGATCCTCAGCACCATCAAGAGCAAGGAGTACAAGGGCAGT
CGGGCCAACGAGCTGCGCATCGACGACACCACGGCGCAGATCAGTGCGGCGCTGATGAGCGACCACGGTGCC
AGCGCGCTGCACCTGGGCTACCTGACCCATCCTCGGCCCGAAGGCGGCAAGCCGCGCGGCGAGGGCTTCGAA
CTGCGCACCGACGAACATGGCGCGGTGCGTGCGGCCAGGGGCCTGCTGCTGAGCACCGAGGAGCAGCTCAGG
GCCGGCGCCGGCCATCTCGACCGAGGCGTCGTGGTGCAGGTGCTGGAGGCGGCGCTGGAGCTGGCCCGCGAG
CTGGGCGACTACGCCGGGGAGCACCAGGGCGTGGGGCACGACGCGGCGCCGCAGCAAACCCTCCAGGAAGCC
GTGCGCGACCTCGGCCACGGTGCCAACGACGAGTCCGGCAAGAGCAACGGAGGCAAGCCAGCGATCGCCTTG
AGCGGTCCGGCAGGGATCGCCGCGGCGACGCCGACGAGCCTGACCCTGGCCGCCGGCGAGCACGTCGACAGC
GTGGCCCGGCAGAACCAGCAGGTGACCGCCGGGCAGAAGGTGGTGATCAACGCCGGCAGCGACATCGGCCTG
TTCGCCCAGGGCGGCGAGCTGCGCCAGATCACCCACCAGGGGCCGATGCTGCTGCAGGCGCAGAAGAACGAC
ATCCGCCTGGAGGCCGAGCAGAGCGTGGAGGTCAGCGCCAGCCAGCAGCACGTGCTGGTCACCGCGAAGGAG
CACATCACCCTGATGTGCGGCGGCGCCTACCTGACCCTCAAGGGCGGCAACATCGAGCTGGGCATGCCCGGC
AACTTCGTGGTCAAGGCGGCGAAGCACAGTCATGTCGGCGCGGCCAGCCTGGAAGCCGAGCTGCCGCAGTTC
GAGGTGGGCGAGACGCAGCGGCGGTTCGTCCTCAAGCAACTGGACGGGCAGACGGCCATGCCCAACGTGCCC
TATACCATCACCATGGCCAACGGCGAGGTCATCGAGGGCGTCACCGACGCCGAAGGCGCCACCCAGCTGCTG
CAGAAGGATGCGATGAACATCGCCAAGGTCGATATGAAACACACGAGATCGCCCGCCTCCGCAGTTGCCGGG
ATAGCAGCGGCGGTTGGCGCGGCGGTTGCAGTCGGCAAGCTCCTGAGTGGCCCCGACGCCGAGGCCGGACGT
GCTCTCAGCGAAGGGGAAATCAGCCTGGCGAAAGACGTATTCGGCGACTCCATCGACTATTCCACGGTCCGC
CTGCGCGACGAGGACTATGTCCCCTGGCAGGGCAAGGACTACGTGATGGCGCCGAACGGCCACATCTACTTC
GGCGAGGAGTTGCGCGGCGTGGCGGACTGGAGCCTGGAGAGCCTGCAGCGCCAGGGCCTGTTCATCCACGAA
ATGACCCATGTCTGGCAGCACCAGCATGGCGTCAACGTCCTTCTGGTGGGGGCCTACCAGCAAGCCAGGCAG
TTTCTCCTAGGCGACCAGTACGCCTACCGGTTGGAGCCGGGAAAGACGTTGAAGGACTACAACATCGAACAG
CAGGGAGACATCGTTCGAGATTATTTCCTCGAGAAGAACGAGTTCGGGGAAGCCTCTGCGAACAGCAGGTTC
GCTGGCGTACTGAAAAACTTCCCAACGGGATACTGA
Translation:
MRQRDLKFTFVVGEGKLAFDVVEFELEEALCEPFRLNLKLASDKNAIDFKQVLDQPGTFTLWQDGRPARYVH
GIVSHFTQGSSGFRRTRYELLLEPQLARLELCCNWRIFQEKSVPEILQALLKEHRVLDYEQRIYHEHLPREY
CVQAGDSDHYLHDRLAFEEGLVYYFRFDEHRHTLVCSDRLYVQERIAGGPVLFSAQPEGDNPQPVLHSFRYS
ENVRTARQTQRDYSFKRPTYDQEHHLAGEALEHQDSSYERYDYPGRYKQSGAGRPFSESRLRGHRRDARVAS
VSGDDPRLIPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEESADAPLGVSYDLRAELVPEDVEWRPA
PLPRPRIDGPQIATVVGPAGEEIHCDEWGRVKVQFPWDREGRHDEFSTCWIRVAQNWAGADWGNMAIPRIGQ
EVIVDYLDGDCDQPIVTGRTYRATNRPPYALPDHKILSTIKSKEYKGSRANELRIDDTTAQISAALMSDHGA
SALHLGYLTHPRPEGGKPRGEGFELRTDEHGAVRAARGLLLSTEEQLRAGAGHLDRGVVVQVLEAALELARE
LGDYAGEHQGVGHDAAPQQTLQEAVRDLGHGANDESGKSNGGKPAIALSGPAGIAAATPTSLTLAAGEHVDS
VARQNQQVTAGQKVVINAGSDIGLFAQGGELRQITHQGPMLLQAQKNDIRLEAEQSVEVSASQQHVLVTAKE
HITLMCGGAYLTLKGGNIELGMPGNFVVKAAKHSHVGAASLEAELPQFEVGETQRRFVLKQLDGQTAMPNVP
YTITMANGEVIEGVTDAEGATQLLQKDAMNIAKVDMKHTRSPASAVAGIAAAVGAAVAVGKLLSGPDAEAGR
ALSEGEISLAKDVFGDSIDYSTVRLRDEDYVPWQGKDYVMAPNGHIYFGEELRGVADWSLESLQRQGLFIHE
MTHVWQHQHGVNVLLVGAYQQARQFLLGDQYAYRLEPGKTLKDYNIEQQGDIVRDYFLEKNEFGEASANSRF
AGVLKNFPTGY*
AnnotationID:66GeneID:56
AnnotatorUID: danlee
Modification Date/Time: 2005-10-06 10:10:22
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:PA0262
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:115
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17257
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:56

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
104 PA0262_tr translation of PA0262 1019 99.01 99.60 0 5318.0
12252 gb|AAG03651.1|AE004464_4 (AE004464) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 1019 99.01 99.60 0 5318.0
105 PA1511_tr translation of PA1511 1023 74.87 77.02 185 4025.0
12253 gb|AAG04900.1|AE004579_12 (AE004579) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 1023 74.87 77.02 185 4025.0
12256 gb|AAN69639.1|AE016597_10 (AE016789) vgrG protein [Pseudomonas putida KT2440] 1046 32.31 44.07 302 1479.0
GC ORFID: 43058How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0262Glimmer Score:
Start: 6089613Stop: 6086554
Length: 3060
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0262 translation of PA0262Homolog Bit Score 2053.0
Other Homologs: t_PA0262 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTCAAAGGGACCTGAAATTCACCTTCGTCGTCGGCGAAGGGAAACTCGCGTTCGATGTCGTCGAGTTC
GAACTGGAAGAAGCGCTCTGCGAGCCTTTCCGCCTGAACCTGAAGCTGGCCAGCGACAAGAACGCCATCGAT
TTCAAGCAGGTACTCGACCAGCCGGGCACCTTCACCCTCTGGCAGGACGGCCGTCCGGCCCGCTACGTCCAT
GGCATCGTCAGCCACTTCACCCAGGGCAGCTCGGGTTTTCGCCGGACCCGCTACGAACTGCTGCTGGAACCG
CAGTTGGCGCGCCTGGAGCTGTGCTGCAACTGGCGGATCTTCCAGGAGAAGAGTGTTCCGGAGATTCTCCAG
GCGCTGCTCAAGGAACACCGGGTGCTCGACTACGAACAGCGCATCTACCATGAGCACCTGCCGCGCGAATAC
TGCGTGCAGGCCGGCGACAGCGATCACTACCTGCACGACCGGCTGGCTTTCgaggaaggCCTGGTCTACTAC
TTCCGCTTCGACGAACACCGCCACACCCTGGTCTGCAGCGACCGGCTCTACGTCCAGGAGCGTATCGCCGGC
GGCCCGGTACTGTTCAGCGCCCAGCCGGAGGGCGACAACCCGCAGCCGGTGCTTCATTCCTTCCGCTACAGC
GAAAATGTTCGTACGGCTCGACAGACCCAGCGGGACTACAGCTTCAAGCGCCCGACCTACGACCAGGAGCAT
CATCTCGCTGGCGAGGCGCTCGAGCATCAGGACTCGTCCTACGAGCGCTACGACTACCCCGGTCGCTACAAG
CAGAGCGGCGCGGGCCGGCCTTTCAGCGAAAGCCGCCTCAGAGGACATCGGCGCGATGCACGGGTGGCATCG
GTCAGCGGCGACGACCCGCGGCTGATCCCGGGCCACGCCTTTGCCCTGGAAGGTCATCCGCGTGCCGACTTC
AACGCCTGGTGGCGGCCGGTGCGGGTGGTCCATCGCGGCACCCAGTATGCCGGCCAGGAGGAAGAGTCCGCC
GACGCCCCTCTGGGGGTGAGCTACGACCTGCGCGCCGAACTGGTGCCCGAGGACGTCGAATGGCGTCCCGCA
CCGCTGCCTCGGCCGCGTATCGATGGTCCGCAGATCGCGACGGTAGTCGGCCCGGCAGGGGAAGAGATCCAT
TGCGACGAGTGGGGGCGGGTGAAAGTCCAGTTCCCCTGGGATCGCGAGGGACGTCACGATGAGTTCAGTACC
TGCTGGATACGGGTCGCGCAGAACTGGGCGGGTGCCGACTGGGGAAACATGGCGATCCCGCGGATTGGCCAG
GAGGTGATCGTCGATTACCTGGACGGCGACTGCGACCAGCCGATCGTCACCGGGCGCACCTACCGGGCGACC
AACCGACCACCCTACGCGCTGCCCGACCACAAGATCCTCAGCACCATCAAGAGCAAGGAGTACAAGGGCAGT
CGGGCCAACGAGCTGCGCATCGACGACACCACGGCGCAGATCAGTGCGGCGCTGATGAGCGACCACGGTGCC
AGCGCGCTGCACCTGGGCTACCTGACCCATCCTCGGCCCGAAGGCGGCAAGCCGCGCGGCGAGGGCTTCGAA
CTGCGCACCGACGAACATGGCGCGGTGCGTGCGGCCAGGGGCCTGCTGCTGAGCACCGAGGAGCAGCTCAGG
GCCGGCGCCGGCCATCTCGACCGAGGCGTCGTGGTGCAGGTGCTGGAGGCGGCGCTGGAGCTGGCCCGCGAG
CTGGGCGACTACGCCGGGGAGCACCAGGGCGTGGGGCACGACGCGGCGCCGCAGCAAACCCTCCAGGAAGCC
GTGCGCGACCTCGGCCACGGTGCCAACGACGAGTCCGGCAAGAGCAACGGAGGCAAGCCAGCGATCGCCTTG
AGCGGTCCGGCAGGGATCGCCGCGGCGACGCCGACGAGCCTGACCCTGGCCGCCGGCGAGCACGTCGACAGC
GTGGCCCGGCAGAACCAGCAGGTGACCGCCGGGCAGAAGGTGGTGATCAACGCCGGCAGCGACATCGGCCTG
TTCGCCCAGGGCGGCGAGCTGCGCCAGATCACCCACCAGGGGCCGATGCTGCTGCAGGCGCAGAAGAACGAC
ATCCGCCTGGAGGCCGAGCAGAGCGTGGAGGTCAGCGCCAGCCAGCAGCACGTGCTGGTCACCGCGAAGGAG
CACATCACCCTGATGTGCGGCGGCGCCTACCTGACCCTCAAGGGCGGCAACATCGAGCTGGGCATGCCCGGC
AACTTCGTGGTCAAGGCGGCGAAGCACAGTCATGTCGGCGCGGCCAGCCTGGAAGCCGAGCTGCCGCAGTTC
GAGGTGGGCGAGACGCAGCGGCGGTTCGTCCTCAAGCAACTGGACGGGCAGACGGCCATGCCCAACGTGCCC
TATACCATCACCATGGCCAACGGCGAGGTCATCGAGGGCGTCACCGACGCCGAAGGCGCCACCCAGCTGCTG
CAGAAGGATGCGATGAACATCGCCAAGGTCGATATGAAACACACGAGATCGCCCGCCTCCGCAGTTGCCGGG
ATAGCAGCGGCGGTTGGCGCGGCGGTTGCAGTCGGCAAGCTCCTGAGTGGCCCCGACGCCGAGGCCGGACGT
GCTCTCAGCGAAGGGGAAATCAGCCTGGCGAAAGACGTATTCGGCGACTCCATCGACTATTCCACGGTCCGC
CTGCGCGACGAGGACTATGTCCCCTGGCAGGGCAAGGACTACGTGATGGCGCCGAACGGCCACATCTACTTC
GGCGAGGAGTTGCGCGGCGTGGCGGACTGGAGCCTGGAGAGCCTGCAGCGCCAGGGCCTGTTCATCCACGAA
ATGACCCATGTCTGGCAGCACCAGCATGGCGTCAACGTCCTTCTGGTGGGGGCCTACCAGCAAGCCAGGCAG
TTTCTCCTAGGCGACCAGTACGCCTACCGGTTGGAGCCGGGAAAGACGTTGAAGGACTACAACATCGAACAG
CAGGGAGACATCGTTCGAGATTATTTCCTCGAGAAGAACGAGTTCGGGGAAGCCTCTGCGAACAGCAGGTTC
GCTGGCGTACTGAAAAACTTCCCAACGGGATACTGA