ViewGene
Locus Name:
GeneID:
Location:

GeneID:5593
TrivialName: PA14_50750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50750
PAO1 Ortholog Locus:
Sequence Length:243
Protein Length:80
Start: 4508849
Stop: 4509091
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN66755.1|AE016303_10 (AE016778) hypothetical protein [Pseudomonas putida KT2440]
Identities = 53/76 (69%), Positives = 63/76 (82%)
Sequence:
ATGGACTATTTCATCATCGTCGTCACCACCGCCGCCGGCCTGTATTTCCACTGGTGGATCTACTGGCGCATC
CGCCGCTGGATGGACCGCGACCTGGCGCTGTCATTCGCCGGCGACGACCCGCAAAAGCGTGACTATCTGTTA
CAGCGACTGGCCGAAGCCAAGGCCAGCAAGGTGAAGCGGCGCGACCTGCCGGCCTGGCTGGAGCGCGCCGCC
GCCGACTACCCTTCTCGCGAAGCCTGA
Translation:
MDYFIIVVTTAAGLYFHWWIYWRIRRWMDRDLALSFAGDDPQKRDYLLQRLAEAKASKVKRRDLPAWLERAA
ADYPSREA*
AnnotationID:5595GeneID:5593
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:47
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
 gi|84328514|ref|ZP_00976518.1|  COG0092: Ribosomal protein S3 [Pseudomonas aeruginosa 2192]
 gi|84322043|ref|ZP_00970388.1|  COG0092: Ribosomal protein S3 [Pseudomonas aeruginosa C3719]
Length=80

 Score =  171 bits (432),  Expect = 1e-41
 Identities = 80/80 (100%), Positives = 80/80 (100%), Gaps = 0/80 (0%)

gi|94415910|ref|ZP_01295742.1|  hypothetical protein PaerP_01002238 [Pseudomonas aeruginosa PA7]
Length=80

 Score =  166 bits (421),  Expect = 2e-40
 Identities = 78/80 (97%), Positives = 79/80 (98%), Gaps = 0/80 (0%)

gi|77381460|gb|ABA72973.1|  conserved hypothetical protein [Pseudomonas fluorescens PfO-1]
 gi|77457457|ref|YP_346962.1|  hypothetical protein Pfl_1230 [Pseudomonas fluorescens PfO-1]
Length=78

 Score =  128 bits (321),  Expect = 8e-29
 Identities = 58/78 (74%), Positives = 67/78 (85%), Gaps = 0/78 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11157




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28323




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5593
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197326
                           gb|AAN66755.1|AE016303_10
                           (AE016778) hypothetical protein PP1130 [Pseudomonas putida KT2440]
                           104
                           50.96
                           60.57
                           27
                           301.0
     

     






      

          
GC ORFID: 48595How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 445059Stop: 444817

          
Length: 243


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGACTATTTCATCATCGTCGTCACCACCGCCGCCGGCCTGTATTTCCACTGGTGGATCTACTGGCGCATC 
CGCCGCTGGATGGACCGCGACCTGGCGCTGTCATTCGCCGGCGACGACCCGCAAAAGCGTGACTATCTGTTA 
CAGCGACTGGCCGAAGCCAAGGCCAGCAAGGTGAAGCGGCGCGACCTGCCGGCCTGGCTGGAGCGCGCCGCC 
GCCGACTACCCTTCTCGCGAAGCCTGA