ViewGene

Locus Name:
GeneID:
Location:

GeneID:559
TrivialName: PA14_19310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19310
PAO1 Ortholog Locus:PA3465
Sequence Length:1716
Protein Length:571
Start: 1665444
Stop: 1663729
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06853.1|AE004767_4 (AE004767) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 570/571 (99%), Positives = 570/571 (99%)
Sequence:
ATGCTCCAGTCCGTTTCGCCCAAGCACGACCTGCCCCTCAAACCCGAAGGCCAAGCGGCCAAGCCAGAACGC
ACCGGCACCTGGGCGCCGTTCTCGATCCAGGCCTTCCGCATCATCTGGATCTGCAACCTGTTCGCCAACCTC
GGCACCTGGGCCCAGTCGGTGGCCGCCGCCTGGGTGGTCACCGACGCCCACGCCAGCCCGCTGATGGTGGCG
ATGATCCAGGTCGCCGCGGCGCTGCCGCTGGTGCTGCTGTCGATCCTCTCCGGGGTCATCGCCGACAACCAC
GACCGGCGCAAGATCATGCTCTGGGGACTCAGCTTCGAGATGACCGGGGCGATGTTCGCCACCCTGCTGGCC
TTCCTCGGCTACCTCGACCCGGTGCTGCTGATCATCTCCATCCTCTGGATCTCCCTCGGCGGGTCGGTGACC
ATCCCGGCCTGGCAGGCGGCGGTCAACGAGCAGGTGCCGGCGCGCATGGTCAGCGACGCGGTGCTGCTCAAC
AGCGTCAACTACAACGTCGCCCGCGCCGCCGGCCCGGCCCTCGGCGGCCTGTTGCTGAGCGCGGTGGGACCG
GCCTGGGTGTTCCTGTTCAACAGCTTCTGCTACATGGCCCTGATCTGGGCGATCTGGCAGTGGCGGCGCGAC
GTGCCCAAGCGCAGCCTGCCGCCGGAAGGCATCCTCGAAGGCGTCACCGCGGCGCTGCGCTTCACCCAGTAC
TCAACCGTCACCCGCCTGGTGATGATGCGCTCCTTCGCCTTCGGCCTCTCCGCCAGCGCGGTCTGGGCCCTG
CTGCCGCTGCTGGCGCACCGCAACCCGGACGGCGACGCGGCGATCTACGGCTACATGCTCGGCGCCCTCGGC
CTCGGCGCGATCCTCGGCAGCACCCAGGTCTCGCGCCTGCGCCAGCGGATCGGCAGCAGCCGGCTGATCAGT
CTGGCCGGCTTCACCCTGGCGCTGATCCTGCTGACCCTCGGCCTGGTAGACAACCTCTGGGTCCTGTTCCCG
GTGCTGATCCTCGGCGGCGGCTGCTGGATCGGCGCCCTCGCCACCTACAACTCGGCGGTGCAGATCCTCGTC
CCCGACTGGATCAAGGCGCGCGCCCTGGCGTTGTACCAGACCGCGCTGTACGGTGGCCTGGCGCTGGGTTCG
TTCCTCTGGGGCCATCTCGCCGAGACCATGACCGTGCACGGTGCGCTGCTGGCCGCCGGCTGCCTGCTGCTG
GCCTCGGTGATCCTGCTGTACAACTCGCGCCTGCCGGAAATGGACGCAGCCAGTATTTCCCGCGCGCCGGCG
AGCATGCCCGGGCAGCCGAGCTTCGTCTTCAACACGCGGCGGGGCATGGTGCTGGTCTCCATCGAATACCGG
ATTCCCGCCGAGCGCACCCGCGACTTCGTTCGCGCCGCCCAGCCGCTGCGCCGCCTGCGCCTGCGCAACGGC
GCGGAGCGCTGGTCGCTGTTCCGCGACGTGAGCAACCCGGAGGTCTGGCAGGAACTGTTCCTGGTGGACAAC
TGGATCCAGCACCTGCGCATGCTCGACCGCATGACCCTGGCCGACAAGATCGTCATCGACAACGTCACCGCC
CTGCATGCCGGCGACGGTCCGCCGCAGATCCGCCATTGCGTGAGCTACGAGGCCAGCAGCTACGATACGCCG
CTGGTGAAGAGCGCCACGCCGCCGGGCAACGACGAGGCGGGCGCGACGGCGGGGAGTTGA
Translation:
MLQSVSPKHDLPLKPEGQAAKPERTGTWAPFSIQAFRIIWICNLFANLGTWAQSVAAAWVVTDAHASPLMVA
MIQVAAALPLVLLSILSGVIADNHDRRKIMLWGLSFEMTGAMFATLLAFLGYLDPVLLIISILWISLGGSVT
IPAWQAAVNEQVPARMVSDAVLLNSVNYNVARAAGPALGGLLLSAVGPAWVFLFNSFCYMALIWAIWQWRRD
VPKRSLPPEGILEGVTAALRFTQYSTVTRLVMMRSFAFGLSASAVWALLPLLAHRNPDGDAAIYGYMLGALG
LGAILGSTQVSRLRQRIGSSRLISLAGFTLALILLTLGLVDNLWVLFPVLILGGGCWIGALATYNSAVQILV
PDWIKARALALYQTALYGGLALGSFLWGHLAETMTVHGALLAAGCLLLASVILLYNSRLPEMDAASISRAPA
SMPGQPSFVFNTRRGMVLVSIEYRIPAERTRDFVRAAQPLRRLRLRNGAERWSLFRDVSNPEVWQELFLVDN
WIQHLRMLDRMTLADKIVIDNVTALHAGDGPPQIRHCVSYEASSYDTPLVKSATPPGNDEAGATAGS*
AnnotationID:568GeneID:559
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 09:09:03
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane protein
Cell Localization:()
Synonyms:PA3465
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05977,COG2814
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE36883.1| (BX640427) putative membrane protein [Bordetella parapertussis]
          Length = 577

 Score =  683 bits (1762), Expect = 0.0
 Identities = 347/573 (60%), Positives = 428/573 (74%), Gaps = 4/573 (0%)

>emb|CAC41672.1| (AL591783) PUTATIVE TRANSPORT TRANSMEMBRANE PROTEIN [Sinorhizobium
           meliloti]
          Length = 551

 Score =  368 bits (945), Expect = e-101
 Identities = 199/521 (38%), Positives = 298/521 (57%), Gaps = 4/521 (0%)

>dbj|BAB49952.1| (AP003000) probable integral membrane efflux protein [Mesorhizobium
           loti]
          Length = 547

 Score =  352 bits (904), Expect = 3e-96
 Identities = 193/541 (35%), Positives = 299/541 (55%), Gaps = 3/541 (0%)
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  88.6% aligned
Score = 64.1 bits (156), Expect = 4e-11
Identities = 80/361 (22%), Positives = 133/361 (36%), Gaps = 13/361 (3%)
Genomic Context:
Comment:
ReferenceID:1121
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18263
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32093
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:559_cdd.html
URL:
Homologs By Global Alignment
Gene ID:559

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
963 PA3465_tr translation of PA3465 571 99.82 99.82 0 2926.0
38322 gb|AAG06853.1|AE004767_4 (AE004767) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 571 99.82 99.82 0 2926.0
38323 emb|CAE36883.1| (BX640427) putative membrane protein [Bordetella parapertussis] 586 59.38 73.37 24 1771.0
38324 emb|CAE33152.1| (BX640445) putative membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 626 55.59 68.69 64 1769.0
GC ORFID: 43561How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3465Glimmer Score:
Start: 3288488Stop: 3290203
Length: 1716
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3465 translation of PA3465Homolog Bit Score 1131.0
Other Homologs: t_PA3465 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCCAGTCCGTTTCGCCCAAGCACGACCTGCCCCTCAAACCCGAAGGCCAAGCGGCCAAGCCAGAACGC
ACCGGCACCTGGGCGCCGTTCTCGATCCAGGCCTTCCGCATCATCTGGATCTGCAACCTGTTCGCCAACCTC
GGCACCTGGGCCCAGTCGGTGGCCGCCGCCTGGGTGGTCACCGACGCCCACGCCAGCCCGCTGATGGTGGCG
ATGATCCAGGTCGCCGCGGCGCTGCCGCTGGTGCTGCTGTCGATCCTCTCCGGGGTCATCGCCGACAACCAC
GACCGGCGCAAGATCATGCTCTGGGGACTCAGCTTCGAGATGACCGGGGCGATGTTCGCCACCCTGCTGGCC
TTCCTCGGCTACCTCGACCCGGTGCTGCTGATCATCTCCATCCTCTGGATCTCCCTCGGCGGGTCGGTGACC
ATCCCGGCCTGGCAGGCGGCGGTCAACGAGCAGGTGCCGGCGCGCATGGTCAGCGACGCGGTGCTGCTCAAC
AGCGTCAACTACAACGTCGCCCGCGCCGCCGGCCCGGCCCTCGGCGGCCTGTTGCTGAGCGCGGTGGGACCG
GCCTGGGTGTTCCTGTTCAACAGCTTCTGCTACATGGCCCTGATCTGGGCGATCTGGCAGTGGCGGCGCGAC
GTGCCCAAGCGCAGCCTGCCGCCGGAAGGCATCCTCGAAGGCGTCACCGCGGCGCTGCGCTTCACCCAGTAC
TCAACCGTCACCCGCCTGGTGATGATGCGCTCCTTCGCCTTCGGCCTCTCCGCCAGCGCGGTCTGGGCCCTG
CTGCCGCTGCTGGCGCACCGCAACCCGGACGGCGACGCGGCGATCTACGGCTACATGCTCGGCGCCCTCGGC
CTCGGCGCGATCCTCGGCAGCACCCAGGTCTCGCGCCTGCGCCAGCGGATCGGCAGCAGCCGGCTGATCAGT
CTGGCCGGCTTCACCCTGGCGCTGATCCTGCTGACCCTCGGCCTGGTAGACAACCTCTGGGTCCTGTTCCCG
GTGCTGATCCTCGGCGGCGGCTGCTGGATCGGCGCCCTCGCCACCTACAACTCGGCGGTGCAGATCCTCGTC
CCCGACTGGATCAAGGCGCGCGCCCTGGCGTTGTACCAGACCGCGCTGTACGGTGGCCTGGCGCTGGGTTCG
TTCCTCTGGGGCCATCTCGCCGAGACCATGACCGTGCACGGTGCGCTGCTGGCCGCCGGCTGCCTGCTGCTG
GCCTCGGTGATCCTGCTGTACAACTCGCGCCTGCCGGAAATGGACGCAGCCAGTATTTCCCGCGCGCCGGCG
AGCATGCCCGGGCAGCCGAGCTTCGTCTTCAACACGCGGCGGGGCATGGTGCTGGTCTCCATCGAATACCGG
ATTCCCGCCGAGCGCACCCGCGACTTCGTTCGCGCCGCCCAGCCGCTGCGCCGCCTGCGCCTGCGCAACGGC
GCGGAGCGCTGGTCGCTGTTCCGCGACGTGAGCAACCCGGAGGTCTGGCAGGAACTGTTCCTGGTGGACAAC
TGGATCCAGCACCTGCGCATGCTCGACCGCATGACCCTGGCCGACAAGATCGTCATCGACAACGTCACCGCC
CTGCATGCCGGCGACGGTCCGCCGCAGATCCGCCATTGCGTGAGCTACGAGGCCAGCAGCTACGATACGCCG
CTGGTGAAGAGCGCCACGCCGCCGGGCAACGACGAGGCGGGCGCGACGGCGGGGAGTTGA