ViewGene
Locus Name:
GeneID:
Location:

GeneID:5585
TrivialName: PA14_51200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51200
PAO1 Ortholog Locus:
Sequence Length:387
Protein Length:128
Start: 4550645
Stop: 4550259
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAE32758.1| (BX640443) conserved hypothetical protein [Bordetella bronchiseptica]
Identities = 64/116 (55%), Positives = 80/116 (68%), Gaps = 5/116 (4%)
Sequence:
GTGGCAGATCTTCCCGATGGCAGTACTCCGGGACCTGAGGCGCAGTACCTTGCGTTTCTCGCCCAGGGCCGT
TTCATGTTGCAGCGCAGCCGTTCCAGCGGTCGCCATGTGTTCTACCCGCGCCAGTTGGTGCCGGGTAGCGGC
GAGACTGATCTCGAGTGGGTTCCCGCCAGCGGCCTGGGTACGCTCTACGCGATCACTGTCAATCGCTCCCGC
GGCGGCAATCACAATGTCGCGCTGGTCGACCTGGACGAGGGCGTGCGCATGATGTCGCGGATCGACGGGCAC
GAGAGCCTGCCGATCGGCACCCGTGTGCAGGCGCGCATCGTCGAGCAGGACGGTGCCAATGTCGTGGTGTTC
GTTCCCCACCAGGAGGGACGACCATGA
Translation:
MADLPDGSTPGPEAQYLAFLAQGRFMLQRSRSSGRHVFYPRQLVPGSGETDLEWVPASGLGTLYAITVNRSR
GGNHNVALVDLDEGVRMMSRIDGHESLPIGTRVQARIVEQDGANVVVFVPHQEGRP*
AnnotationID:5587GeneID:5585
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84322588|ref|ZP_00970673.1|  COG1545: Predicted nucleic-acid-binding protein containing a 
Zn-ribbon [Pseudomonas aeruginosa 2192]
 gi|84316501|ref|ZP_00964975.1|  COG1545: Predicted nucleic-acid-binding protein containing a 
Zn-ribbon [Pseudomonas aeruginosa C3719]
Length=103

 Score =  209 bits (531),  Expect = 3e-53
 Identities = 102/103 (99%), Positives = 103/103 (100%), Gaps = 0/103 (0%)

gi|94413901|ref|ZP_01293775.1|  hypothetical protein PaerP_01004290 [Pseudomonas aeruginosa PA7]
Length=102

 Score =  186 bits (471),  Expect = 3e-46
 Identities = 93/103 (90%), Positives = 98/103 (95%), Gaps = 1/103 (0%)






 
Structural Features:
pfam01796, DUF35, Domain of unknown function DUF35. Score: 64.2, 5e-12
COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon. Score: 63.8, 6e-12






   
Genomic Context:






   
Comment:
ORF 5585 is present (but not annotated) in PAO1.


















    ReferenceID:15448




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28307




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5585
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197323
                           emb|CAE42070.1|
                           (BX640416) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           143
                           47.55
                           60.83
                           15
                           289.0
     

     
     
197324
                           emb|CAE32758.1|
                           (BX640443) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           143
                           47.55
                           60.83
                           15
                           289.0
     

     
     
197325
                           emb|CAE37314.1|
                           (BX640429) conserved hypothetical protein [Bordetella parapertussis]
                           143
                           47.55
                           60.83
                           15
                           289.0
     

     






      

          
GC ORFID: 48587How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 403263Stop: 403649

          
Length: 387


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGCAGATCTTCCCGATGGCAGTACTCCGGGACCTGAGGCGCAGTACCTTGCGTTTCTCGCCCAGGGCCGT 
TTCATGTTGCAGCGCAGCCGTTCCAGCGGTCGCCATGTGTTCTACCCGCGCCAGTTGGTGCCGGGTAGCGGC 
GAGACTGATCTCGAGTGGGTTCCCGCCAGCGGCCTGGGTACGCTCTACGCGATCACTGTCAATCGCTCCCGC 
GGCGGCAATCACAATGTCGCGCTGGTCGACCTGGACGAGGGCGTGCGCATGATGTCGCGGATCGACGGGCAC 
GAGAGCCTGCCGATCGGCACCCGTGTGCAGGCGCGCATCGTCGAGCAGGACGGTGCCAATGTCGTGGTGTTC 
GTTCCCCACCAGGAGGGACGACCATGA