ViewGene

Locus Name:
GeneID:
Location:

GeneID: 558

TrivialName: PA14_00620

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_00620

PAO1 Ortholog Locus: PA0049

Sequence Length: 1662

Protein Length: 553

Start: 63091

Stop: 61430

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03439.1|AE004444_8 (AE004444) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 551/553 (99%), Positives = 552/553 (99%)

Sequence:

ATGCGCTACGCCCGTCACGCAAGCCGATACTCCCTCTTCACCCTGGCCGTCTCGGCAGCCCTGCTGCCCGGC
GCCGGCTGGGCCGCCAACGGCGACCTCGCCGGCGCCCGCAAGCCGCCCAGCGTCGCCTGCTCCTGGAACCGC
GAGGCAGCGTTGTCCTACGAGGAGCGCCGGCTCGACACGCCGCTGCCGTTCAGCGGCGCCAACGTCGTCACC
CACGACCAGACGCCGCTGGCCGAGCGCATCGTCAAGGGCGCCGGCTTCGACGGCTTCGAACCGGCCTTCGCC
AAGCGCCTGTGCGCCGCCGACGGCCGCACCCCGGTCACCAGCTACGCCAAGGCACTGAAGCTGGTCACCGAA
GAGGGCCGCGCGCTGTGGCGCGCCGCCGTCGACCGGGCCCAGGGGCGCCGTGCCATTCCCGCCGGCGCGCTG
CCGGCCAGCGATGACCGCATGCTCTACTGGACGCGCCTCTACATGACCCGCACCCTGCGCCAATGGGCGCCC
TCCTTCCGCCTCGGCAAGGCCCAGGCCCAGGCGCTGCAATGGCGCTTCGAACGCGCCTCGCGCGGACAGTTG
GACATCGACCTGCCGCGCCGCTACGCCGCCGACGGCTCGCGCTACCGGCGGATGATCATCAGCGGCTTCGAC
GTCTTCACCCTGGGCACTCCCGGGACGGCGAACACCGGCCTGCGCAACGGCAACCCCTCGGGCGCCACCGCC
CTTGCGCTGGACGGCCGCGAGTTCAGGCTGGCCGACGGCAGCCTGCTGCGTATCGAGGCCTACCTGTTGCCG
GTCAGCTACGACCCGTTCAACCGCGGCATGCAGGAAGACACCCTGGGCCCCTGGTTCCGCCCCGGCCCGCGC
CGGGTCGACGCCTCCGTCACCATCAGCCAGGGCGGCGCCAACCAGTTCTGGCTGGAGGCCTGGAACGGCCGC
TTCCACGGCTCCTCCGCCGGCAACGACGGCATCGTCTACTGCCCCGCCGACAGCGCTTTGCCCAACTACGTG
CTTCCCCTGGGCAGCGTGACCAATCCCGGCACCGCGCCGATTTCCCTGCGCGGCTCCGGCTGCAATATCAAC
CCGCCGCGCCGCTGGCTCGGCTACGACAGCGCCAGCCGCTGGCGGCAGAACCTGCCGGCGCAGTTCTCCAAG
GCCTCGCTGCCGGTCCGCCAGTTGCTCGCCGCCGATACCTGGCGCGGCATCGAGCGGCCGCCGGGCGCTACC
AGCCAGGCCGCGGAAGGCTTCGACGTCACCTGGCACACCAACTACGACTTCTTCCCCGATTGCGCCAACCCG
CGCACCGAAAACGTGCCGACCAACGGGGTGATGAACGCCATGCCCGATCCCTCCCTGGTGCTCCCGCCGAAC
CGACGGATCTGCGCGCGCAACGGCGGTGGCGGCGACTACCTGTCCAACGAGAGCGCCTACCGCAACACGGTG
CTGCGCGACGCGTTCCGCCTGGAGATTCCCGCCGGGCACATCCATGTCCCGGTGATGAACAACTACTACACC
GGCGTACCGGCGAGCGGCGGCGGCGCGCGCAACGACAACGCCATCAGCGACGCCCGCTACGAGGCCTACCGC
AGCGCCATCGTGGCGCAGACCCGGGCGCTGCTGGTGGGCGTCGGCAACGCCCTGGCGCAGGGGGCGCAAGCG
GACTAG

Translation:

MRYARHASRYSLFTLAVSAALLPGAGWAANGDLAGARKPPSVACSWNREAALSYEERRLDTPLPFSGANVVT
HDQTPLAERIVKGAGFDGFEPAFAKRLCAADGRTPVTSYAKALKLVTEEGRALWRAAVDRAQGRRAIPAGAL
PASDDRMLYWTRLYMTRTLRQWAPSFRLGKAQAQALQWRFERASRGQLDIDLPRRYAADGSRYRRMIISGFD
VFTLGTPGTANTGLRNGNPSGATALALDGREFRLADGSLLRIEAYLLPVSYDPFNRGMQEDTLGPWFRPGPR
RVDASVTISQGGANQFWLEAWNGRFHGSSAGNDGIVYCPADSALPNYVLPLGSVTNPGTAPISLRGSGCNIN
PPRRWLGYDSASRWRQNLPAQFSKASLPVRQLLAADTWRGIERPPGATSQAAEGFDVTWHTNYDFFPDCANP
RTENVPTNGVMNAMPDPSLVLPPNRRICARNGGGGDYLSNESAYRNTVLRDAFRLEIPAGHIHVPVMNNYYT
GVPASGGGARNDNAISDARYEAYRSAIVAQTRALLVGVGNALAQGAQAD*

AnnotationID:567 GeneID:558

AnnotatorUID: diggins

Modification Date/Time: 2005-03-22 15:03:12

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:1119

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18261

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:558

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

962 PA0049_tr translation of PA0049 553 99.63 99.81 0 2927.0

38321 gb|AAG03439.1|AE004444_8 (AE004444) hypothetical protein PA0049 [Pseudomonas aeruginosa PAO1] 553 99.63 99.81 0 2927.0

GC ORFID: `43560`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0049`	Glimmer Score:
Start: `5864428`	Stop: `5862767`
Length: `1662`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA0049 translation of PA0049`	Homolog Bit Score `1132.0`
Other Homologs: `t_PA0049 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGCTACGCCCGTCACGCAAGCCGATACTCCCTCTTCACCCTGGCCGTCTCGGCAGCCCTGCTGCCCGGC GCCGGCTGGGCCGCCAACGGCGACCTCGCCGGCGCCCGCAAGCCGCCCAGCGTCGCCTGCTCCTGGAACCGC GAGGCAGCGTTGTCCTACGAGGAGCGCCGGCTCGACACGCCGCTGCCGTTCAGCGGCGCCAACGTCGTCACC CACGACCAGACGCCGCTGGCCGAGCGCATCGTCAAGGGCGCCGGCTTCGACGGCTTCGAACCGGCCTTCGCC AAGCGCCTGTGCGCCGCCGACGGCCGCACCCCGGTCACCAGCTACGCCAAGGCACTGAAGCTGGTCACCGAA GAGGGCCGCGCGCTGTGGCGCGCCGCCGTCGACCGGGCCCAGGGGCGCCGTGCCATTCCCGCCGGCGCGCTG CCGGCCAGCGATGACCGCATGCTCTACTGGACGCGCCTCTACATGACCCGCACCCTGCGCCAATGGGCGCCC TCCTTCCGCCTCGGCAAGGCCCAGGCCCAGGCGCTGCAATGGCGCTTCGAACGCGCCTCGCGCGGACAGTTG GACATCGACCTGCCGCGCCGCTACGCCGCCGACGGCTCGCGCTACCGGCGGATGATCATCAGCGGCTTCGAC GTCTTCACCCTGGGCACTCCCGGGACGGCGAACACCGGCCTGCGCAACGGCAACCCCTCGGGCGCCACCGCC CTTGCGCTGGACGGCCGCGAGTTCAGGCTGGCCGACGGCAGCCTGCTGCGTATCGAGGCCTACCTGTTGCCG GTCAGCTACGACCCGTTCAACCGCGGCATGCAGGAAGACACCCTGGGCCCCTGGTTCCGCCCCGGCCCGCGC CGGGTCGACGCCTCCGTCACCATCAGCCAGGGCGGCGCCAACCAGTTCTGGCTGGAGGCCTGGAACGGCCGC TTCCACGGCTCCTCCGCCGGCAACGACGGCATCGTCTACTGCCCCGCCGACAGCGCTTTGCCCAACTACGTG CTTCCCCTGGGCAGCGTGACCAATCCCGGCACCGCGCCGATTTCCCTGCGCGGCTCCGGCTGCAATATCAAC CCGCCGCGCCGCTGGCTCGGCTACGACAGCGCCAGCCGCTGGCGGCAGAACCTGCCGGCGCAGTTCTCCAAG GCCTCGCTGCCGGTCCGCCAGTTGCTCGCCGCCGATACCTGGCGCGGCATCGAGCGGCCGCCGGGCGCTACC AGCCAGGCCGCGGAAGGCTTCGACGTCACCTGGCACACCAACTACGACTTCTTCCCCGATTGCGCCAACCCG CGCACCGAAAACGTGCCGACCAACGGGGTGATGAACGCCATGCCCGATCCCTCCCTGGTGCTCCCGCCGAAC CGACGGATCTGCGCGCGCAACGGCGGTGGCGGCGACTACCTGTCCAACGAGAGCGCCTACCGCAACACGGTG CTGCGCGACGCGTTCCGCCTGGAGATTCCCGCCGGGCACATCCATGTCCCGGTGATGAACAACTACTACACC GGCGTACCGGCGAGCGGCGGCGGCGCGCGCAACGACAACGCCATCAGCGACGCCCGCTACGAGGCCTACCGC AGCGCCATCGTGGCGCAGACCCGGGCGCTGCTGGTGGGCGTCGGCAACGCCCTGGCGCAGGGGGCGCAAGCG GACTAG