ViewGene

Locus Name:
GeneID:
Location:

GeneID:5576
TrivialName: PA14_52120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52120
PAO1 Ortholog Locus:
Sequence Length:192
Protein Length:63
Start: 4621825
Stop: 4622016
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN67283.1|AE016355_1 (AE016780) hypothetical protein [Pseudomonas putida KT2440]
Identities = 33/57 (57%), Positives = 40/57 (70%)
Sequence:
ATGAGTGTGACAGTGACCGAGCGTGACGATGACCACAAATCCCGCGAGCTGCGTGCGCTTGGCCGCCGCTGC
TGGGACGTGCATCAGCAGGGACTGCTGGTTGGCGTCTTCCATAACGAGGATGACGCCCACGCCTATCGGATC
AAACTCGAGAAAGAAGAAGAACTGCGGCAGATAGGTAAATCGGCCTGA
Translation:
MSVTVTERDDDHKSRELRALGRRCWDVHQQGLLVGVFHNEDDAHAYRIKLEKEEELRQIGKSA*
AnnotationID:5578GeneID:5576
AnnotatorUID: danlee
Modification Date/Time: 2006-06-01 19:07:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|84322522|ref|ZP_00970607.1|  COG0554: Glycerol kinase [Pseudomonas aeruginosa 2192]
Length=59

 Score =  124 bits (310),  Expect = 1e-27
 Identities = 58/59 (98%), Positives = 59/59 (100%), Gaps = 0/59 (0%)

gi|84316547|ref|ZP_00965020.1|  COG0554: Glycerol kinase [Pseudomonas aeruginosa C3719]
Length=59

 Score =  122 bits (306),  Expect = 4e-27
 Identities = 57/59 (96%), Positives = 59/59 (100%), Gaps = 0/59 (0%)

gi|94417963|ref|ZP_01297779.1|  hypothetical protein PaerP_01000112 [Pseudomonas aeruginosa PA7]
Length=59

 Score =  107 bits (266),  Expect = 2e-22
 Identities = 50/59 (84%), Positives = 54/59 (91%), Gaps = 0/59 (0%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:11132
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28289
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48578How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 332082Stop: 331891
Length: 192
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAGTGTGACAGTGACCGAGCGTGACGATGACCACAAATCCCGCGAGCTGCGTGCGCTTGGCCGCCGCTGC
TGGGACGTGCATCAGCAGGGACTGCTGGTTGGCGTCTTCCATAACGAGGATGACGCCCACGCCTATCGGATC
AAACTCGAGAAAGAAGAAGAACTGCGGCAGATAGGTAAATCGGCCTGA