ViewGene
Locus Name:
GeneID:
Location:

GeneID:557
TrivialName: PA14_25840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25840
PAO1 Ortholog Locus:PA2953
Sequence Length:1656
Protein Length:551
Start: 2256570
Stop: 2254915
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06341.1|AE004721_9 (AE004721) electron transfer flavoprotein-ubiquinone oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 549/551 (99%), Positives = 551/551 (100%)
Sequence:
GTGGAACGCGAATACATGGAATTCGACGTCGTCATCGTCGGCGCCGGCCCCGCCGGTCTGTCCGCCGCATGC
CGACTGAAGCAGAAGGCCGCCGAAGCCGGTCAAGAGATCAGCGTCTGCGTGGTCGAGAAGGGTTCCGAAGTG
GGCGCCCACATCCTCTCCGGCGCGGTGTTCGAGCCGCGCGCGCTGAACGAGCTGTTCCCCGACTGGAAGGAA
CTCGGCGCGCCGCTCAATACTCCGGTGACCGGCGACGACATCTACGTCTTGAAGAGCGCCGAGAGCGCTACC
AAGGTGCCCAACTTCTTCGTGCCCAAGACCATGCACAACGAGGGCAACTATATCATCTCCCTGGGCAACCTC
TGCCGCTGGCTGGCCCAGCAGGCCGAAGGACTGGGCGTGGAGATCTACCCGGGCTTCGCCGCCCAGGAAGCG
CTGATCGACGAGAACGGCGTGGTCCGCGGCATCGTCACCGGCGACCTCGGCGTCGACCGCGAAGGCAACCCG
AAAGAAGGCTACTACACCCCCGGCATGGAGCTGCGGGCCAAGTACACCCTGTTCGCCGAAGGCTGCCGCGGG
CACATCGGCAAGCAACTGATCAAGAAATACAACCTGGACAGCAAGGCCGATGCCCAGCACTACGGTATCGGC
ATCAAGGAAATCTGGGACATCGACCCGTCCAAGCACAAGCCCGGCCTGGTGGTCCATACCGCCGGCTGGCCG
CTGAACGACGAAAATACCGGCGGCTCGTTCCTCTACCACCTGGAGAACAACCAGGTGTTCGTCGGCCTGATC
ATCGACCTGTCCTACAGCAACCCGCACCTGTCGCCGTTCGACGAGTTCCAGCGCTACAAGCACCACCCGGTG
GTCAAGCAGTACCTGGAAGGCGGCAAGCGCGTGGCCTACGGCGCCCGGGCCATCTGCAAGGGCGGCCTGAAT
TCGCTGCCGAAGATGGTCTTCCCCGGCGGCGCGCTGATCGGTTGCGACCTCGGCACCCTGAACTTCGCCAAG
ATCAAGGGCAGCCACACCGCGATGAAGTCCGGCATGCTCGCCGCCGACGCGATCGCCGAGGCCCTGGCCGCC
GGCCGCGAAGGCGGCGACGAGCTGTCCAACTACGTCGATGCGTTCAAGGCCAGCTGGTTGTACGACGAACTG
TTCCGCAGCCGCAACTTCGGCGCGGCCATCCACAAGTTCGGCGCTATCGGCGGCGGCGCGTTCAACTTCATC
GACCAGAACATCTTCGGCGGCAAGATCCCCGTCACCCTGCATGACGACAAGCCGGACTACGCCTGCCTGAAA
AAGGCCAGCGAAGCGCCGAAGATCGACTACCCGAAGCCGGACGGCAAGCTCAGCTTCGACAAGCTGTCCTCG
GTGTTCCTCTCCAATACCAACCACGAGGAAGACCAGCCGATCCACCTCAAGCTGGCCGATGCGAGCATTCCG
ATCGAGAAGAACCTGCCGCTCTACGACGAGCCGGCCCAGCGCTACTGCCCGGCAGGCGTGTACGAAGTGGTG
GCCAACGACGACGGCAGCAAGCGCTTCCAGATCAACGCGCAGAACTGCGTGCACTGCAAGACCTGCGACATC
AAGGACCCGGCGCAGAACATCACCTGGGTGGCGCCGGAAGGTACCGGCGGGCCGAACTACCCCAACATGTAA
Translation:
MEREYMEFDVVIVGAGPAGLSAACRLKQKAAEAGQEISVCVVEKGSEVGAHILSGAVFEPRALNELFPDWKE
LGAPLNTPVTGDDIYVLKSAESATKVPNFFVPKTMHNEGNYIISLGNLCRWLAQQAEGLGVEIYPGFAAQEA
LIDENGVVRGIVTGDLGVDREGNPKEGYYTPGMELRAKYTLFAEGCRGHIGKQLIKKYNLDSKADAQHYGIG
IKEIWDIDPSKHKPGLVVHTAGWPLNDENTGGSFLYHLENNQVFVGLIIDLSYSNPHLSPFDEFQRYKHHPV
VKQYLEGGKRVAYGARAICKGGLNSLPKMVFPGGALIGCDLGTLNFAKIKGSHTAMKSGMLAADAIAEALAA
GREGGDELSNYVDAFKASWLYDELFRSRNFGAAIHKFGAIGGGAFNFIDQNIFGGKIPVTLHDDKPDYACLK
KASEAPKIDYPKPDGKLSFDKLSSVFLSNTNHEEDQPIHLKLADASIPIEKNLPLYDEPAQRYCPAGVYEVV
ANDDGSKRFQINAQNCVHCKTCDIKDPAQNITWVAPEGTGGPNYPNM*
AnnotationID:566GeneID:557
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:41
Gene Name:
Confidence Code:2
GeneProduct:putative electron transfer flavoprotein-ubiquinone oxidoreductase
Cell Localization:()
Synonyms:PA2953
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05187,COG0644
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69784.1|AE016614_10 (AE016789) electron transfer flavoprotein-ubiquinone
           oxidoreductase, putative [Pseudomonas putida KT2440]
          Length = 560

 Score =  984 bits (2544), Expect = 0.0
 Identities = 467/554 (84%), Positives = 509/554 (91%), Gaps = 3/554 (0%)

>gb|AAN57418.1|AE015877_9 (AE015877) electron transfer flavoprotein-ubiquinone
           oxidoreductase, putative [Shewanella oneidensis MR-1]
          Length = 549

 Score =  796 bits (2056), Expect = 0.0
 Identities = 376/551 (68%), Positives = 448/551 (81%), Gaps = 2/551 (0%)

>dbj|BAB61752.1| (AB026669) electron transfer flavoprotein-ubiqinone
           oxidoreductase-like protein [Acinetobacter sp.
           NCIMB9871]
          Length = 574

 Score =  778 bits (2009), Expect = 0.0
 Identities = 381/570 (66%), Positives = 451/570 (79%), Gaps = 22/570 (3%)








 
Structural Features:
pfam05187, ETF_QO, Electron transfer flavoprotein-ubiquinone oxidoreductase.
CD-Length = 156 residues, 100.0% aligned
Score =  279 bits (715), Expect = 7e-76
Identities = 112/156 (71%), Positives = 126/156 (80%), Gaps = 2/156 (1%)

COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]
CD-Length = 396 residues,  99.7% aligned
Score =  263 bits (673), Expect = 4e-71
Identities = 138/460 (30%), Positives = 197/460 (42%), Gaps = 66/460 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14163




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18259




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36097




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:557_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:557
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
961
                           PA2953_tr
                           translation of PA2953
                           551
                           99.63
                           99.99
                           0
                           2934.0
     

     
     
38286
                           gb|AAG06341.1|AE004721_9
                           (AE004721) electron transfer flavoprotein-ubiquinone oxidoreductase [Pseudomonas aeruginosa PAO1]
                           551
                           99.45
                           99.99
                           0
                           2931.0
     

     
     
38287
                           gb|AAN69784.1|AE016614_10
                           (AE016789) electron transfer flavoprotein-ubiquinone oxidoreductase, putative [Pseudomonas putida KT2440]
                           560
                           83.57
                           90.89
                           9
                           2550.0
     

     
     
38288
                           gb|AAN57418.1|AE015877_9
                           (AE015877) electron transfer flavoprotein-ubiquinone oxidoreductase, putative [Shewanella oneidensis MR-1]
                           551
                           68.05
                           81.30
                           2
                           2056.0
     

     
     
38291
                           gb|AAC27118.1|
                           (U87258) electron transfer flavoprotein-ubiquinone oxidoreductase homolog [Acinetobacter sp. ADP1]
                           573
                           66.31
                           78.70
                           25
                           2027.0
     

     






      

          
GC ORFID: 43559How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2953Glimmer Score: 

          
Start: 2697355Stop: 2699010

          
Length: 1656


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2953 translation of PA2953Homolog Bit Score 1134.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene444 (ORF: BLASTX 1014.0), t_PA2953 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAACGCGAATACATGGAATTCGACGTCGTCATCGTCGGCGCCGGCCCCGCCGGTCTGTCCGCCGCATGC 
CGACTGAAGCAGAAGGCCGCCGAAGCCGGTCAAGAGATCAGCGTCTGCGTGGTCGAGAAGGGTTCCGAAGTG 
GGCGCCCACATCCTCTCCGGCGCGGTGTTCGAGCCGCGCGCGCTGAACGAGCTGTTCCCCGACTGGAAGGAA 
CTCGGCGCGCCGCTCAATACTCCGGTGACCGGCGACGACATCTACGTCTTGAAGAGCGCCGAGAGCGCTACC 
AAGGTGCCCAACTTCTTCGTGCCCAAGACCATGCACAACGAGGGCAACTATATCATCTCCCTGGGCAACCTC 
TGCCGCTGGCTGGCCCAGCAGGCCGAAGGACTGGGCGTGGAGATCTACCCGGGCTTCGCCGCCCAGGAAGCG 
CTGATCGACGAGAACGGCGTGGTCCGCGGCATCGTCACCGGCGACCTCGGCGTCGACCGCGAAGGCAACCCG 
AAAGAAGGCTACTACACCCCCGGCATGGAGCTGCGGGCCAAGTACACCCTGTTCGCCGAAGGCTGCCGCGGG 
CACATCGGCAAGCAACTGATCAAGAAATACAACCTGGACAGCAAGGCCGATGCCCAGCACTACGGTATCGGC 
ATCAAGGAAATCTGGGACATCGACCCGTCCAAGCACAAGCCCGGCCTGGTGGTCCATACCGCCGGCTGGCCG 
CTGAACGACGAAAATACCGGCGGCTCGTTCCTCTACCACCTGGAGAACAACCAGGTGTTCGTCGGCCTGATC 
ATCGACCTGTCCTACAGCAACCCGCACCTGTCGCCGTTCGACGAGTTCCAGCGCTACAAGCACCACCCGGTG 
GTCAAGCAGTACCTGGAAGGCGGCAAGCGCGTGGCCTACGGCGCCCGGGCCATCTGCAAGGGCGGCCTGAAT 
TCGCTGCCGAAGATGGTCTTCCCCGGCGGCGCGCTGATCGGTTGCGACCTCGGCACCCTGAACTTCGCCAAG 
ATCAAGGGCAGCCACACCGCGATGAAGTCCGGCATGCTCGCCGCCGACGCGATCGCCGAGGCCCTGGCCGCC 
GGCCGCGAAGGCGGCGACGAGCTGTCCAACTACGTCGATGCGTTCAAGGCCAGCTGGTTGTACGACGAACTG 
TTCCGCAGCCGCAACTTCGGCGCGGCCATCCACAAGTTCGGCGCTATCGGCGGCGGCGCGTTCAACTTCATC 
GACCAGAACATCTTCGGCGGCAAGATCCCCGTCACCCTGCATGACGACAAGCCGGACTACGCCTGCCTGAAA 
AAGGCCAGCGAAGCGCCGAAGATCGACTACCCGAAGCCGGACGGCAAGCTCAGCTTCGACAAGCTGTCCTCG 
GTGTTCCTCTCCAATACCAACCACGAGGAAGACCAGCCGATCCACCTCAAGCTGGCCGATGCGAGCATTCCG 
ATCGAGAAGAACCTGCCGCTCTACGACGAGCCGGCCCAGCGCTACTGCCCGGCAGGCGTGTACGAAGTGGTG 
GCCAACGACGACGGCAGCAAGCGCTTCCAGATCAACGCGCAGAACTGCGTGCACTGCAAGACCTGCGACATC 
AAGGACCCGGCGCAGAACATCACCTGGGTGGCGCCGGAAGGTACCGGCGGGCCGAACTACCCCAACATGTAA