ViewGene
Locus Name:
GeneID:
Location:

GeneID:556
TrivialName: PA14_00490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00490
PAO1 Ortholog Locus:PA0040
Sequence Length:1689
Protein Length:562
Start: 41133
Stop: 42821
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03430.1|AE004443_8 (AE004443) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 559/562 (99%), Positives = 560/562 (99%)
Sequence:
GTGGCTCTCCATCGCCTGGCCTTTATCTTCCTGTGCCTGCCGCTCATGGCCAGCGCCGCCCCCTTCACCTCC
CCCGGCGACCGCGACCTGATCCGCGACCGCCAGCAGCGCCTGCTGGACGAACAGCGCAAGCGCCTGGAGGAA
CTCCAGCAACTGCCCGGCAAGGGAGCGCCCGCCGCTGCGGATGCCTCCGGCGACGACGAGCGCTGCTTCGAG
ATCCGCCGCATCGAGATGGAAGGCGCCGGGCACCTCGGCGAAAGCGCGCGTCGCCAACTGCTGGCGCCCTAC
CAGGGGCGCTGCCTGGGCGTCGGCCAGCTCAATGCGCTGCTCAAGGCCGTCACCGACCATTACCTGGATCGC
GGCTACGTCACCACCCGCGCCTACCTGCCACAGCAGGACCTGGCCTCCGGGACCCTGCGCATCATCGTCGTC
GAAGGCCGCCTGGAGGGCCTGGACAGCTCCGCGCTGGCCAGCCCGCGCGAACTGGCGATGAGCTTTCCGGGC
AGGACCGGCGAGCTGCTCGACCTGCGCGAACTGGAGCAACTGGTCGACCAGTTGAGTCGCCTGCCGTCGCGC
CAGGCGCAACTGGAGCTAGTGCCCGGCAGCGAGGTCGGCGGCAGTCGGGTGCGTCTCAAGGGCGAGCGCGAC
AAGCCCTGGCGGGTCTCCGCCACGCGCAACAACGACGGCGACGTCAGCACCGGCGAGCAGCAGATGGGCCTG
GGTCTGGACTGGGACAGCCCGCTGGGCCTGGCCGACCAGCTCAACCTGCGCGCCAACCGCGACGCGGTGACC
GACCGCTGGCGCCATTCCGACAGCCAGAGCCTGTTCTACAGCCTGCCCTGGGGCTGGTGGACCTTCACCTAC
GGCTACAGCCAGAGCGACTACCGCACGCGCAACGAGGCCAGCGGCTTCCCCTTCAAGCTCGATGGCGACAGC
CGCAGCCACCAGTTCCGCGCCGAACGCGTGCTGCACCGCGACGGTGTGAGCAAGACCGCCATGAGCCTGGGG
CTCAGCCACCAGCGCACCAACAACTATGTCGAAGACACCCGCCTGGAAGACCAGAGCACGCGGATCACCGAG
ACCCAGCTCGGCTTCAACCATGGCCGGCGGATCGGCAGTGGCTTCGTCAACCTCGACCTCGGCTGGCAGCAG
GGCATCGGCGCCCTTGGCGCGCAGGGTCGCGGCCACCCGCAGGCGGGCGATCCGAATGCGCGCTACGACAAG
TACAGCCTGACCCTCAGCTACCTGCAGCCGTTCCAGCTATGGGGCGAGCGCTTCAGCTTCGACAGCCTGGCC
ACCGGGCAGAGGAGCGAGGACGTGCTGTTCAGCCCGCAGCGCATCAGCCTCGGCGGCAACAGCTCGGTGCGC
GGCTTCAAGGACCAGACCCTGACCGGCGACAGCGGCGGCTACTGGCGCAACCAGTTGCGCTGGCGGCGTGCG
GTGGAATGGGCGCCGCTGCGGCCCTGGCTGCAGGAATACGGCGTGGCCTTCGCCTACGACGTCGGCGTGATC
CGCCACGACCGCTACAACGACGGCGCCAGCGGGCGCATGAGCGGCAACGCCATCGAACTGGATGCCCGCGGC
CGCTATTTCGCCGCCAGCGTCGGCTTCGCCCGCTCGCTGGAGCGGCCCAGCGCCATCGAGCGGCGCGAGCAC
CCGATCTATTTCCGGGTCGACGCGTTCTTCTGA
Translation:
MALHRLAFIFLCLPLMASAAPFTSPGDRDLIRDRQQRLLDEQRKRLEELQQLPGKGAPAAADASGDDERCFE
IRRIEMEGAGHLGESARRQLLAPYQGRCLGVGQLNALLKAVTDHYLDRGYVTTRAYLPQQDLASGTLRIIVV
EGRLEGLDSSALASPRELAMSFPGRTGELLDLRELEQLVDQLSRLPSRQAQLELVPGSEVGGSRVRLKGERD
KPWRVSATRNNDGDVSTGEQQMGLGLDWDSPLGLADQLNLRANRDAVTDRWRHSDSQSLFYSLPWGWWTFTY
GYSQSDYRTRNEASGFPFKLDGDSRSHQFRAERVLHRDGVSKTAMSLGLSHQRTNNYVEDTRLEDQSTRITE
TQLGFNHGRRIGSGFVNLDLGWQQGIGALGAQGRGHPQAGDPNARYDKYSLTLSYLQPFQLWGERFSFDSLA
TGQRSEDVLFSPQRISLGGNSSVRGFKDQTLTGDSGGYWRNQLRWRRAVEWAPLRPWLQEYGVAFAYDVGVI
RHDRYNDGASGRMSGNAIELDARGRYFAASVGFARSLERPSAIERREHPIYFRVDAFF*
AnnotationID:565GeneID:556
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 15:03:58
Gene Name:
Confidence Code:3
GeneProduct:putative hemolysin activation/secretion protein
Cell Localization:()
Synonyms:PA0040
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2831,pfam03865
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56710.1| (AE016867) hemolysin activator protein, HlyB family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 569

 Score =  685 bits (1768), Expect = 0.0
 Identities = 338/558 (60%), Positives = 427/558 (76%), Gaps = 3/558 (0%)








 
Structural Features:
COG2831, FhaC, Hemolysin activation/secretion protein 
[Intracellular trafficking and secretion]
CD-Length = 554 residues,  99.8% aligned
Score =  433 bits (1115), Expect = 3e-122
Identities = 211/567 (37%), Positives = 307/567 (54%), Gaps = 21/567 (3%)

pfam03865, HlyB, Hemolysin activator HlyB.
CD-Length = 563 residues,  84.9% aligned
Score =  218 bits (556), Expect = 2e-57
Identities = 150/496 (30%), Positives = 247/496 (49%), Gaps = 26/496 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14161




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18257




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33401




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:556_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:556
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
959
                           PA0040_tr
                           translation of PA0040
                           562
                           99.46
                           99.64
                           0
                           2935.0
     

     
     
38283
                           gb|AAG03430.1|AE004443_8
                           (AE004443) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           562
                           99.28
                           99.64
                           0
                           2932.0
     

     
     
960
                           PA2463_tr
                           translation of PA2463
                           565
                           96.46
                           97.52
                           3
                           2861.0
     

     
     
38284
                           gb|AAG05851.1|AE004674_1
                           (AE004674) hypothetical protein PA2463 [Pseudomonas aeruginosa PAO1]
                           565
                           96.46
                           97.52
                           3
                           2861.0
     

     
     
38285
                           gb|AAO56710.1|
                           (AE016867) hemolysin activator protein, HlyB family [Pseudomonas syringae pv. tomato str. DC3000]
                           570
                           59.64
                           75.43
                           9
                           1770.0
     

     






      

          
GC ORFID: 43558How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0040Glimmer Score: 

          
Start: 5842470Stop: 5844158

          
Length: 1689


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0040 translation of PA0040Homolog Bit Score 1135.0

          
Other Homologs:  t_PA2463 (ORF: BLASTX 1109.0), t_PA0040 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCTCTCCATCGCCTGGCCTTTATCTTCCTGTGCCTGCCGCTCATGGCCAGCGCCGCCCCCTTCACCTCC 
CCCGGCGACCGCGACCTGATCCGCGACCGCCAGCAGCGCCTGCTGGACGAACAGCGCAAGCGCCTGGAGGAA 
CTCCAGCAACTGCCCGGCAAGGGAGCGCCCGCCGCTGCGGATGCCTCCGGCGACGACGAGCGCTGCTTCGAG 
ATCCGCCGCATCGAGATGGAAGGCGCCGGGCACCTCGGCGAAAGCGCGCGTCGCCAACTGCTGGCGCCCTAC 
CAGGGGCGCTGCCTGGGCGTCGGCCAGCTCAATGCGCTGCTCAAGGCCGTCACCGACCATTACCTGGATCGC 
GGCTACGTCACCACCCGCGCCTACCTGCCACAGCAGGACCTGGCCTCCGGGACCCTGCGCATCATCGTCGTC 
GAAGGCCGCCTGGAGGGCCTGGACAGCTCCGCGCTGGCCAGCCCGCGCGAACTGGCGATGAGCTTTCCGGGC 
AGGACCGGCGAGCTGCTCGACCTGCGCGAACTGGAGCAACTGGTCGACCAGTTGAGTCGCCTGCCGTCGCGC 
CAGGCGCAACTGGAGCTAGTGCCCGGCAGCGAGGTCGGCGGCAGTCGGGTGCGTCTCAAGGGCGAGCGCGAC 
AAGCCCTGGCGGGTCTCCGCCACGCGCAACAACGACGGCGACGTCAGCACCGGCGAGCAGCAGATGGGCCTG 
GGTCTGGACTGGGACAGCCCGCTGGGCCTGGCCGACCAGCTCAACCTGCGCGCCAACCGCGACGCGGTGACC 
GACCGCTGGCGCCATTCCGACAGCCAGAGCCTGTTCTACAGCCTGCCCTGGGGCTGGTGGACCTTCACCTAC 
GGCTACAGCCAGAGCGACTACCGCACGCGCAACGAGGCCAGCGGCTTCCCCTTCAAGCTCGATGGCGACAGC 
CGCAGCCACCAGTTCCGCGCCGAACGCGTGCTGCACCGCGACGGTGTGAGCAAGACCGCCATGAGCCTGGGG 
CTCAGCCACCAGCGCACCAACAACTATGTCGAAGACACCCGCCTGGAAGACCAGAGCACGCGGATCACCGAG 
ACCCAGCTCGGCTTCAACCATGGCCGGCGGATCGGCAGTGGCTTCGTCAACCTCGACCTCGGCTGGCAGCAG 
GGCATCGGCGCCCTTGGCGCGCAGGGTCGCGGCCACCCGCAGGCGGGCGATCCGAATGCGCGCTACGACAAG 
TACAGCCTGACCCTCAGCTACCTGCAGCCGTTCCAGCTATGGGGCGAGCGCTTCAGCTTCGACAGCCTGGCC 
ACCGGGCAGAGGAGCGAGGACGTGCTGTTCAGCCCGCAGCGCATCAGCCTCGGCGGCAACAGCTCGGTGCGC 
GGCTTCAAGGACCAGACCCTGACCGGCGACAGCGGCGGCTACTGGCGCAACCAGTTGCGCTGGCGGCGTGCG 
GTGGAATGGGCGCCGCTGCGGCCCTGGCTGCAGGAATACGGCGTGGCCTTCGCCTACGACGTCGGCGTGATC 
CGCCACGACCGCTACAACGACGGCGCCAGCGGGCGCATGAGCGGCAACGCCATCGAACTGGATGCCCGCGGC 
CGCTATTTCGCCGCCAGCGTCGGCTTCGCCCGCTCGCTGGAGCGGCCCAGCGCCATCGAGCGGCGCGAGCAC 
CCGATCTATTTCCGGGTCGACGCGTTCTTCTGA