ViewGene
Locus Name:
GeneID:
Location:

GeneID:5552
TrivialName: PA14_53310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53310
PAO1 Ortholog Locus:PA0847
Sequence Length:2046
Protein Length:681
Start: 4724553
Stop: 4726598
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04236.1|AE004519_7 (AE004519) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 679/681 (99%), Positives = 681/681 (100%)
Sequence:
ATGTCGAATTTCAATTCGCACGATAGAGTCAGCCTATGCTCTCAACCTGCGGCTAGACTCATGCTGTCGCCC
ATTACCCGTCCTCACCGCATGCCCCTACGCACACGCCTGCTCTGGCTGTTCCTGCCGTTGCTGGCCGCCAGT
CTCGGCGGTATCTGGCTCTTGTCGGAAAGCATCCTGCTGAGCCGTTTCGACCGAGAGGACCAGCAACGCCTG
CAAGAGGGCGCCACCGTCCTGCACAACCGGCTGGACTTCGAGTTGAAGCGCCACCTGGACATCGTTCGCACC
TACGCCTGGTGGGATGCCAGCTACGACTTCATCCAGCGCCCCAACGAGACCTTCGAACAGGAAAACCTCGAC
CACGAGATGCTCGACGACCTGGGATTCGACTTCGTCCTGTTCCTCGACGACCGGGGTCACCTGCAACTGAAG
CAGTGGTCCCCGCCCGCGCCCGACCAGCGCGTGCTCTTCGGCGCCCCCTCGGCGAGCGACCAGGCCCTGCTC
GAGGCACTGCAGCAACGCGCCATCCGCCTCGGCGCGCTGGACTTTCGCGGACGCACCGACCACAGCCTGAGC
GAGCTGCTGCTGGTCGACAACCTGCCGACCCTGCTGGTCAGCGTGCCTATCAGCAACAACCAGGGTAGCGCG
CCGGCGAAGGGCGCGATCCTCGCCGGCTACTTCCTCGACCGGGAACGCCTGGCCAACCTCCGCGAACAGATG
CAGGCCGACCTGCAACCGATGCCCAACATCGCCACCGACGCCACCTGGAAGCCGCTGCGCAGCCGCAGCGGC
AGTACCCACAACCAGGCCCTGCTCAGCCCGCGGCGATTCATCGGCGAACATGTCCAGCAGGTCTCGGTGCAG
TACCTGAGCTCCAGCGGCGAGCCGCAGCTGCGTTTCGACATCACCAAGAAACGCCTGCTCTACATCCAGGGC
GAGAAGGCCATCAACTTCTTCCTCGGCGCCTCCCTGCTGGTCGCGCTGGGCGCTTTCCTGGTCGGCTACCTG
GCCCTGGAGCTGTGGGTCCTGCGCCGGGTCCAACGGCTCAACCGGGAGGTCGCCGAAGTCGGACGCAACGCC
CACTCGATACGCCTGAGCGACTTCGGCAACGACGAGCTGGGACAACTGGCGGGCGAGATGAACCAGATGCTC
GAGCGCCTGGAACACAGCGAGGCGCGCGACCGGGCGATCCTCCAGTCGATGCGCGACGGCTACTTCGAAATG
GACGTCGACGGCGTGATCCTCACCGTCAACCCCGCGCTCTGCCAACTGCTCGGTCAGACGCGCGAAACGCTG
ATCGGCCACCCCTACTACGAACTGCTCGGCGAAGACGACCTGGCGCGTGCCCGCCAACCCTTCCAGCGCGCC
ATGCAGAGCGGCGCAGGCAAGACCTTCGCCATCCCCCTGCAGCGCGCCGACGGCAGCCTCGGCTACTTCGAG
GCCACGGTTTCGCTGATCCACGACCTGCAAGGCGAACTGCGGGGCTACCGCGGCATCGTCCGCGACGTCAGC
GACCAGATCGCCTACCAGCAGCAATTGCTGGAAATGGCCTACCGCGACCCGCTGACCGGCCTGGGCAACCGC
AAGGCCTTCGACGAACAGCTCGGCCAGGCGTTGCTTCGCGCCGGCTCCGGCGGAAGCGAACTGGCGCTGCTG
TACCTGGACCTGGACCGCTTCAAGGAGGTCAACGACCGCTTCGGCCACGACATCGGCGATGCCCTCCTCAGG
ACCGTCGCCGAACGGGTACGCAGCACCCTGCGGCAGCCGGACAAGGCCTACCGCCTGGGCGGCGACGAATTC
GCCGTGCTCCTCGAGGACAGCCAGGAAAACAATCCGCAGCGCCTCGCAGAACGCCTGCTGGCGGCGCTGGTC
CAACCGATCGCGCTGAATGGCGAACGCATCGACTTCGTCACCCCGAGCATCGGCATCGCTCTCTACCCGCGG
CATGCCGGCGATGCCGAAGGACTGGTCCGTGCCGCCGACAGCGCCATGTACCAGGCCAAGCGCCAGCGCAAC
CACTATTGCCTGTACCAGGCGCCAGCCTGA
Translation:
MSNFNSHDRVSLCSQPAARLMLSPITRPHRMPLRTRLLWLFLPLLAASLGGIWLLSESILLSRFDREDQQRL
QEGATVLHNRLDFELKRHLDIVRTYAWWDASYDFIQRPNETFEQENLDHEMLDDLGFDFVLFLDDRGHLQLK
QWSPPAPDQRVLFGAPSASDQALLEALQQRAIRLGALDFRGRTDHSLSELLLVDNLPTLLVSVPISNNQGSA
PAKGAILAGYFLDRERLANLREQMQADLQPMPNIATDATWKPLRSRSGSTHNQALLSPRRFIGEHVQQVSVQ
YLSSSGEPQLRFDITKKRLLYIQGEKAINFFLGASLLVALGAFLVGYLALELWVLRRVQRLNREVAEVGRNA
HSIRLSDFGNDELGQLAGEMNQMLERLEHSEARDRAILQSMRDGYFEMDVDGVILTVNPALCQLLGQTRETL
IGHPYYELLGEDDLARARQPFQRAMQSGAGKTFAIPLQRADGSLGYFEATVSLIHDLQGELRGYRGIVRDVS
DQIAYQQQLLEMAYRDPLTGLGNRKAFDEQLGQALLRAGSGGSELALLYLDLDRFKEVNDRFGHDIGDALLR
TVAERVRSTLRQPDKAYRLGGDEFAVLLEDSQENNPQRLAERLLAALVQPIALNGERIDFVTPSIGIALYPR
HAGDAEGLVRAADSAMYQAKRQRNHYCLYQAPA*
AnnotationID:5554GeneID:5552
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 16:04:04
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0847
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3322, smart00267, COG2199
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3322, Predicted periplasmic ligand-binding sensor domain. Score: 260, 1e-69
smart00267, DUF1, Domain of Unknown Function with GGDEF motif. Score: 170, 1e-42
COG2199, FOG: GGDEF domain. Score: 169, 2e-42







   
Genomic Context:






   
Comment:
Confirmed frame-shift results in truncation of first 54 aa of PAO1 PA0847.


















    ReferenceID:11090




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28241




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5552
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7894
                           PA0847_tr
                           translation of PA0847
                           735
                           92.38
                           92.65
                           54
                           3474.0
     

     
     
197217
                           gb|AAG04236.1|AE004519_7
                           (AE004519) hypothetical protein PA0847 [Pseudomonas aeruginosa PAO1]
                           735
                           92.38
                           92.65
                           54
                           3474.0
     

     
     
197236
                           gb|AAG08314.1|AE004906_2
                           (AE004906) hypothetical protein PA4929 [Pseudomonas aeruginosa PAO1]
                           797
                           25.97
                           37.76
                           233
                           324.0
     

     
     
7897
                           PA4929_tr
                           translation of PA4929
                           797
                           25.97
                           37.76
                           233
                           324.0
     

     
     
197314
                           gb|AAG06258.1|AE004713_7
                           (AE004713) hypothetical protein PA2870 [Pseudomonas aeruginosa PAO1]
                           743
                           25.30
                           35.39
                           280
                           312.0
     

     






      

          
GC ORFID: 48554How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 229354Stop: 227309

          
Length: 2046


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0847 translation of PA0847Homolog Bit Score 1342.0

          
Other Homologs:  t_PA0847 translation of PA0847 (BLASTP 1342), t_PA1120 translation of PA1120 (BLASTP 131), t_PA1727 translation of PA1727 (BLASTP 130), t_PA4929 translation of PA4929 (BLASTP 129), t_PA3311 translation of PA3311 (BLASTP 129), psyr_15may02_Scaffold5_revised_gene6072 related to: gi|15598507|ref|NP_252001.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||B83232 conserved hypothetical protein PA3311 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06699.1|AE004753_7 (AE004753) conserved hyp-TRUNCATED- (BLASTP 123), psyr_15may02_Scaffold1_revised_gene1407 related to: gi|15596924|ref|NP_250418.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||H83428 conserved hypothetical protein PA1727 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05116.1|AE004599_1 (AE004599) conserved hyp-TRUNCATED- (BLASTP 112), t_PA1107 translation of PA1107 (BLASTP 105), t_PA2870 translation of PA2870 (BLASTP 103), psyr_15may02_Scaffold6_revised_gene6737 related to: gi|15805493|ref|NP_294189.1| (NC_001263) sensory box/GGDEF family protein [Deinococcus radiodurans] pir||B75515 sensory box/GGDEF family protein - Deinococcus radiodurans (strain R1) gb|AAF10046.1|AE001906_2 (AE001906) sensory box/GGDEF family pr-TRUNCATED- (BLASTP 103)

          
GC ORF Sequence

           
ATGTCGAATTTCAATTCGCACGATAGAGTCAGCCTATGCTCTCAACCTGCGGCTAGACTCATGCTGTCGCCC 
ATTACCCGTCCTCACCGCATGCCCCTACGCACACGCCTGCTCTGGCTGTTCCTGCCGTTGCTGGCCGCCAGT 
CTCGGCGGTATCTGGCTCTTGTCGGAAAGCATCCTGCTGAGCCGTTTCGACCGAGAGGACCAGCAACGCCTG 
CAAGAGGGCGCCACCGTCCTGCACAACCGGCTGGACTTCGAGTTGAAGCGCCACCTGGACATCGTTCGCACC 
TACGCCTGGTGGGATGCCAGCTACGACTTCATCCAGCGCCCCAACGAGACCTTCGAACAGGAAAACCTCGAC 
CACGAGATGCTCGACGACCTGGGATTCGACTTCGTCCTGTTCCTCGACGACCGGGGTCACCTGCAACTGAAG 
CAGTGGTCCCCGCCCGCGCCCGACCAGCGCGTGCTCTTCGGCGCCCCCTCGGCGAGCGACCAGGCCCTGCTC 
GAGGCACTGCAGCAACGCGCCATCCGCCTCGGCGCGCTGGACTTTCGCGGACGCACCGACCACAGCCTGAGC 
GAGCTGCTGCTGGTCGACAACCTGCCGACCCTGCTGGTCAGCGTGCCTATCAGCAACAACCAGGGTAGCGCG 
CCGGCGAAGGGCGCGATCCTCGCCGGCTACTTCCTCGACCGGGAACGCCTGGCCAACCTCCGCGAACAGATG 
CAGGCCGACCTGCAACCGATGCCCAACATCGCCACCGACGCCACCTGGAAGCCGCTGCGCAGCCGCAGCGGC 
AGTACCCACAACCAGGCCCTGCTCAGCCCGCGGCGATTCATCGGCGAACATGTCCAGCAGGTCTCGGTGCAG 
TACCTGAGCTCCAGCGGCGAGCCGCAGCTGCGTTTCGACATCACCAAGAAACGCCTGCTCTACATCCAGGGC 
GAGAAGGCCATCAACTTCTTCCTCGGCGCCTCCCTGCTGGTCGCGCTGGGCGCTTTCCTGGTCGGCTACCTG 
GCCCTGGAGCTGTGGGTCCTGCGCCGGGTCCAACGGCTCAACCGGGAGGTCGCCGAAGTCGGACGCAACGCC 
CACTCGATACGCCTGAGCGACTTCGGCAACGACGAGCTGGGACAACTGGCGGGCGAGATGAACCAGATGCTC 
GAGCGCCTGGAACACAGCGAGGCGCGCGACCGGGCGATCCTCCAGTCGATGCGCGACGGCTACTTCGAAATG 
GACGTCGACGGCGTGATCCTCACCGTCAACCCCGCGCTCTGCCAACTGCTCGGTCAGACGCGCGAAACGCTG 
ATCGGCCACCCCTACTACGAACTGCTCGGCGAAGACGACCTGGCGCGTGCCCGCCAACCCTTCCAGCGCGCC 
ATGCAGAGCGGCGCAGGCAAGACCTTCGCCATCCCCCTGCAGCGCGCCGACGGCAGCCTCGGCTACTTCGAG 
GCCACGGTTTCGCTGATCCACGACCTGCAAGGCGAACTGCGGGGCTACCGCGGCATCGTCCGCGACGTCAGC 
GACCAGATCGCCTACCAGCAGCAATTGCTGGAAATGGCCTACCGCGACCCGCTGACCGGCCTGGGCAACCGC 
AAGGCCTTCGACGAACAGCTCGGCCAGGCGTTGCTTCGCGCCGGCTCCGGCGGAAGCGAACTGGCGCTGCTG 
TACCTGGACCTGGACCGCTTCAAGGAGGTCAACGACCGCTTCGGCCACGACATCGGCGATGCCCTCCTCAGG 
ACCGTCGCCGAACGGGTACGCAGCACCCTGCGGCAGCCGGACAAGGCCTACCGCCTGGGCGGCGACGAATTC 
GCCGTGCTCCTCGAGGACAGCCAGGAAAACAATCCGCAGCGCCTCGCAGAACGCCTGCTGGCGGCGCTGGTC 
CAACCGATCGCGCTGAATGGCGAACGCATCGACTTCGTCACCCCGAGCATCGGCATCGCTCTCTACCCGCGG 
CATGCCGGCGATGCCGAAGGACTGGTCCGTGCCGCCGACAGCGCCATGTACCAGGCCAAGCGCCAGCGCAAC 
CACTATTGCCTGTACCAGGCGCCAGCCTGA